Wall clock time and date at job start Tue Mar 31 2020 14:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47004 * 300.00191 * 3 2 1 6 6 H 1.48504 * 109.47057 * 60.00136 * 3 2 1 7 7 C 1.37880 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47435 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00056 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46995 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46948 * 65.00317 * 12 11 10 14 14 C 1.34230 * 117.00090 * 179.97438 * 13 12 11 15 15 O 1.20829 * 119.99603 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99876 * 179.97438 * 14 13 12 17 17 H 1.08991 * 110.34716 * 60.67452 * 16 14 13 18 18 C 1.54350 * 110.29999 * 182.79522 * 16 14 13 19 19 C 1.54344 * 102.39351 * 145.27744 * 18 16 14 20 20 C 1.51365 * 105.17199 * 333.64792 * 19 18 16 21 21 C 1.38245 * 109.75854 * 17.19316 * 20 19 18 22 22 C 1.38456 * 119.85960 * 179.74985 * 21 20 19 23 23 C 1.38152 * 120.24216 * 0.43166 * 22 21 20 24 24 C 1.38193 * 119.95050 * 359.57204 * 23 22 21 25 25 C 1.38265 * 119.91730 * 0.22010 * 24 23 22 26 26 Cl 1.73596 * 119.90465 * 179.97438 * 25 24 23 27 27 H 0.96995 * 120.00386 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.46530 * 60.00316 * 9 7 2 29 29 H 1.08999 * 109.47235 * 300.00849 * 9 7 2 30 30 H 1.08998 * 109.47189 * 60.00107 * 11 10 9 31 31 H 1.09000 * 109.47065 * 299.99803 * 11 10 9 32 32 H 1.08994 * 109.47396 * 304.99763 * 12 11 10 33 33 H 1.09000 * 109.47127 * 184.99329 * 12 11 10 34 34 H 1.08999 * 110.81965 * 27.05395 * 18 16 14 35 35 H 1.08998 * 110.99378 * 263.58341 * 18 16 14 36 36 H 1.09005 * 110.30682 * 214.72953 * 19 18 16 37 37 H 1.09000 * 110.39248 * 92.61674 * 19 18 16 38 38 H 1.08002 * 119.88159 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.02992 * 179.79651 * 23 22 21 40 40 H 1.08003 * 120.03976 * 180.20185 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9561 -0.0017 13 8 3.3994 -5.8891 1.2390 14 6 4.3935 -6.7769 1.3982 15 8 4.6278 -7.5836 0.5297 16 6 5.2173 -6.7674 2.6601 17 1 4.5839 -6.9523 3.5276 18 6 6.3354 -7.8283 2.5777 19 6 7.4921 -7.1506 3.3425 20 6 7.2442 -5.6642 3.1998 21 6 5.9369 -5.4439 2.8077 22 6 5.4825 -4.1497 2.6192 23 6 6.3331 -3.0785 2.8130 24 6 7.6401 -3.2974 3.2049 25 6 8.0951 -4.5887 3.3979 26 17 9.7372 -4.8633 3.8895 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 0.9453 -4.9822 -0.8913 31 1 0.9447 -4.9827 0.8886 32 1 3.3216 -5.7952 -0.8435 33 1 2.1822 -6.9374 -0.0916 34 1 6.6146 -8.0172 1.5411 35 1 6.0339 -8.7525 3.0706 36 1 8.4495 -7.4188 2.8958 37 1 7.4722 -7.4381 4.3937 38 1 4.4614 -3.9773 2.3125 39 1 5.9759 -2.0705 2.6618 40 1 8.3054 -2.4608 3.3599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815229550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:16 Heat of formation + Delta-G solvation = -125.153712 kcal Electronic energy + Delta-G solvation = -24718.212240 eV Core-core repulsion = 20909.422231 eV Total energy + Delta-G solvation = -3808.790009 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05996 -39.65861 -37.25697 -36.69437 -36.19673 -35.50401 -32.81958 -31.61177 -30.14147 -29.31089 -28.13853 -26.92793 -23.41531 -22.84125 -22.41135 -21.81089 -21.24715 -20.17605 -17.80136 -17.18352 -16.84063 -16.40824 -16.19293 -15.62782 -15.42867 -15.15906 -14.80342 -14.56072 -14.30110 -13.75127 -13.59565 -13.52720 -13.24672 -12.86487 -12.54114 -12.18824 -12.03752 -11.92274 -11.75358 -11.67712 -11.47869 -11.22475 -11.09533 -10.98065 -10.94159 -10.91398 -10.77263 -10.45731 -10.40507 -10.08719 -9.16083 -8.93005 -8.80504 -8.70459 -8.26195 -6.16180 -4.17998 1.05060 1.11824 1.99518 2.22157 2.70213 3.25541 3.32529 3.37983 3.52795 4.02680 4.18503 4.28232 4.54232 4.67197 4.72367 4.83057 4.99443 5.05407 5.18896 5.20810 5.23479 5.30083 5.39810 5.42066 5.53772 5.60206 5.72308 5.81194 5.83187 5.89000 5.91995 6.04198 6.09625 6.38167 6.42715 6.53810 6.74510 7.01095 7.35178 7.73548 7.78013 8.08017 8.47250 8.94689 9.47097 10.95441 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.003651 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.291671 B = 7667.632836 C = 9910.778718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.338 6.338 14 C 0.470 3.530 15 O -0.511 6.511 16 C -0.040 4.040 17 H 0.126 0.874 18 C -0.106 4.106 19 C -0.079 4.079 20 C -0.085 4.085 21 C -0.089 4.089 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.104 4.104 25 C -0.028 4.028 26 Cl -0.079 7.079 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.281 -14.254 8.482 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.254 6.254 14 C 0.313 3.687 15 O -0.400 6.400 16 C -0.059 4.059 17 H 0.143 0.857 18 C -0.144 4.144 19 C -0.116 4.116 20 C -0.085 4.085 21 C -0.090 4.090 22 C -0.095 4.095 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.055 4.055 26 Cl -0.050 7.050 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.511 -14.349 8.236 21.360 hybrid contribution 0.006 0.936 -0.133 0.945 sum 13.516 -13.413 8.104 20.695 Atomic orbital electron populations 1.69959 1.06120 1.27124 1.50514 1.24937 0.94952 0.99419 0.95098 0.86310 0.80050 0.82641 0.77685 1.19430 1.20831 1.20800 1.21064 0.94089 0.89221 1.50849 0.91449 1.20237 0.88745 0.83494 0.95494 1.87906 1.35317 1.12582 1.95233 1.22320 0.93228 0.85457 1.00592 1.23240 0.93679 0.98837 0.84288 1.86587 1.43313 1.53894 1.41561 1.23359 0.78903 0.77922 0.88544 1.90636 1.67786 1.38337 1.43212 1.20610 0.96073 0.94239 0.94949 0.85661 1.22359 0.92417 0.96565 1.03021 1.21070 0.99660 0.89400 1.01451 1.20250 0.93324 0.95129 0.99847 1.19980 0.93595 0.93475 1.01920 1.21176 1.01766 0.90463 0.96099 1.21193 0.92438 1.00083 0.98294 1.21063 0.96696 0.94823 0.99730 1.20387 0.85698 0.93854 1.05536 1.98350 1.19729 1.96810 1.90096 0.92657 0.97668 0.97518 0.91964 0.93169 0.90493 0.90404 0.88858 0.89364 0.89827 0.89429 0.83391 0.84036 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.65 9.43 -34.44 -0.32 -14.97 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.14 5.69 36.00 0.20 5.34 16 10 O -0.39 -9.01 10.30 -38.80 -0.40 -9.41 16 11 C 0.06 1.08 6.33 37.16 0.24 1.31 16 12 C 0.07 1.11 5.85 37.16 0.22 1.33 16 13 O -0.34 -5.31 8.85 -42.02 -0.37 -5.68 16 14 C 0.47 6.71 7.22 36.00 0.26 6.97 16 15 O -0.51 -8.18 15.26 -18.75 -0.29 -8.47 16 16 C -0.04 -0.45 3.37 -91.89 -0.31 -0.76 16 17 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.11 -0.98 6.32 -25.32 -0.16 -1.14 16 19 C -0.08 -0.70 6.47 -26.85 -0.17 -0.88 16 20 C -0.08 -0.98 6.05 -104.17 -0.63 -1.61 16 21 C -0.09 -1.13 5.59 -104.21 -0.58 -1.71 16 22 C -0.08 -1.09 9.59 -39.53 -0.38 -1.47 16 23 C -0.10 -1.32 10.04 -39.63 -0.40 -1.72 16 24 C -0.10 -1.23 9.83 -39.59 -0.39 -1.61 16 25 C -0.03 -0.33 6.32 -39.45 -0.25 -0.58 16 26 Cl -0.08 -0.82 28.71 -51.86 -1.49 -2.31 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.09 1.01 7.07 -51.93 -0.37 0.64 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.15 2.34 7.03 -52.49 -0.37 1.97 16 39 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -31.78 358.58 -9.56 -41.34 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.35 Total: -1.62 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.78 Total: -9.99 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.06 Total: -23.56 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.49 Total: -2.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.78 -9.56 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815229550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.815 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds