Wall clock time and date at job start Tue Mar 31 2020 14:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47004 * 300.00191 * 3 2 1 6 6 H 1.48504 * 109.47057 * 60.00136 * 3 2 1 7 7 C 1.37880 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47435 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00056 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46995 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46948 * 65.00317 * 12 11 10 14 14 C 1.34230 * 117.00090 * 179.97438 * 13 12 11 15 15 O 1.20829 * 119.99603 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99876 * 179.97438 * 14 13 12 17 17 H 1.08991 * 110.34716 * 60.67452 * 16 14 13 18 18 C 1.54350 * 110.29999 * 182.79522 * 16 14 13 19 19 C 1.54344 * 102.39351 * 145.27744 * 18 16 14 20 20 C 1.51365 * 105.17199 * 333.64792 * 19 18 16 21 21 C 1.38245 * 109.75854 * 17.19316 * 20 19 18 22 22 C 1.38456 * 119.85960 * 179.74985 * 21 20 19 23 23 C 1.38152 * 120.24216 * 0.43166 * 22 21 20 24 24 C 1.38193 * 119.95050 * 359.57204 * 23 22 21 25 25 C 1.38265 * 119.91730 * 0.22010 * 24 23 22 26 26 Cl 1.73596 * 119.90465 * 179.97438 * 25 24 23 27 27 H 0.96995 * 120.00386 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.46530 * 60.00316 * 9 7 2 29 29 H 1.08999 * 109.47235 * 300.00849 * 9 7 2 30 30 H 1.08998 * 109.47189 * 60.00107 * 11 10 9 31 31 H 1.09000 * 109.47065 * 299.99803 * 11 10 9 32 32 H 1.08994 * 109.47396 * 304.99763 * 12 11 10 33 33 H 1.09000 * 109.47127 * 184.99329 * 12 11 10 34 34 H 1.08999 * 110.81965 * 27.05395 * 18 16 14 35 35 H 1.08998 * 110.99378 * 263.58341 * 18 16 14 36 36 H 1.09005 * 110.30682 * 214.72953 * 19 18 16 37 37 H 1.09000 * 110.39248 * 92.61674 * 19 18 16 38 38 H 1.08002 * 119.88159 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.02992 * 179.79651 * 23 22 21 40 40 H 1.08003 * 120.03976 * 180.20185 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9561 -0.0017 13 8 3.3994 -5.8891 1.2390 14 6 4.3935 -6.7769 1.3982 15 8 4.6278 -7.5836 0.5297 16 6 5.2173 -6.7674 2.6601 17 1 4.5839 -6.9523 3.5276 18 6 6.3354 -7.8283 2.5777 19 6 7.4921 -7.1506 3.3425 20 6 7.2442 -5.6642 3.1998 21 6 5.9369 -5.4439 2.8077 22 6 5.4825 -4.1497 2.6192 23 6 6.3331 -3.0785 2.8130 24 6 7.6401 -3.2974 3.2049 25 6 8.0951 -4.5887 3.3979 26 17 9.7372 -4.8633 3.8895 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 0.9453 -4.9822 -0.8913 31 1 0.9447 -4.9827 0.8886 32 1 3.3216 -5.7952 -0.8435 33 1 2.1822 -6.9374 -0.0916 34 1 6.6146 -8.0172 1.5411 35 1 6.0339 -8.7525 3.0706 36 1 8.4495 -7.4188 2.8958 37 1 7.4722 -7.4381 4.3937 38 1 4.4614 -3.9773 2.3125 39 1 5.9759 -2.0705 2.6618 40 1 8.3054 -2.4608 3.3599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815229550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:15 Heat of formation + Delta-G solvation = -141.413190 kcal Electronic energy + Delta-G solvation = -24718.917304 eV Core-core repulsion = 20909.422231 eV Total energy + Delta-G solvation = -3809.495073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09249 -40.70694 -38.78961 -37.73570 -37.44085 -36.45648 -34.94388 -32.59945 -31.57242 -30.20639 -29.28371 -28.75041 -24.71526 -24.35682 -23.76012 -23.06410 -22.15097 -21.17263 -18.92122 -18.68490 -18.22627 -17.82317 -17.58273 -16.85702 -16.61828 -16.40510 -16.21637 -16.10829 -15.64384 -15.06732 -14.70457 -14.52017 -14.28550 -14.16606 -13.89469 -13.61021 -13.26806 -12.99683 -12.90209 -12.77141 -12.69250 -12.62835 -12.52443 -12.45986 -12.15380 -11.97977 -11.89979 -11.85108 -11.72801 -11.55690 -11.26101 -10.90026 -10.27131 -9.73797 -9.63760 -8.32164 -6.43713 0.08434 0.16887 1.03813 1.16104 1.40604 1.41185 1.55728 1.61702 2.34125 2.55658 3.02403 3.05437 3.17519 3.33093 3.58656 3.86450 3.91712 3.98261 4.08802 4.11034 4.18102 4.37193 4.41569 4.44485 4.50398 4.54765 4.67333 4.72034 4.77398 4.86047 4.96425 5.03674 5.16945 5.17974 5.20644 5.35673 5.40740 5.45339 5.55286 5.75567 5.95671 6.49813 6.63625 6.80311 7.27965 8.80324 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.003651 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.291671 B = 7667.632836 C = 9910.778718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.209 3.791 10 O -0.406 6.406 11 C 0.054 3.946 12 C 0.077 3.923 13 O -0.353 6.353 14 C 0.469 3.531 15 O -0.530 6.530 16 C -0.038 4.038 17 H 0.151 0.849 18 C -0.099 4.099 19 C -0.074 4.074 20 C -0.085 4.085 21 C -0.100 4.100 22 C -0.099 4.099 23 C -0.116 4.116 24 C -0.104 4.104 25 C -0.035 4.035 26 Cl -0.064 7.064 27 H 0.270 0.730 28 H -0.010 1.010 29 H -0.011 1.011 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.926 -14.970 9.454 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.326 6.326 11 C -0.023 4.023 12 C 0.004 3.996 13 O -0.269 6.269 14 C 0.313 3.687 15 O -0.420 6.420 16 C -0.057 4.057 17 H 0.168 0.832 18 C -0.136 4.136 19 C -0.111 4.111 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.117 4.117 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.062 4.062 26 Cl -0.035 7.035 27 H 0.079 0.921 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 15.158 -15.088 9.211 23.286 hybrid contribution -0.500 1.077 -0.430 1.263 sum 14.657 -14.011 8.781 22.096 Atomic orbital electron populations 1.70056 1.07693 1.28557 1.50617 1.25887 0.95882 1.03171 0.93974 0.85210 0.78825 0.77619 0.78248 1.18731 1.19849 1.19634 1.21385 0.94074 0.90760 1.52041 0.92062 1.19853 0.88540 0.84422 0.93760 1.87861 1.35394 1.14075 1.95312 1.22630 0.94441 0.83417 1.01779 1.23193 0.93088 0.99259 0.84087 1.86601 1.44003 1.54724 1.41542 1.23983 0.78386 0.77017 0.89302 1.90622 1.68208 1.39043 1.44118 1.20853 0.96484 0.94217 0.94141 0.83164 1.22395 0.91591 0.97117 1.02531 1.21164 0.99825 0.87150 1.02923 1.20593 0.92581 0.96739 0.98689 1.20121 0.94507 0.93334 1.02048 1.21071 1.00870 0.91903 0.97840 1.21245 0.93197 0.99840 0.99116 1.21245 0.96237 0.95752 0.98980 1.20529 0.86506 0.93907 1.05213 1.98354 1.18480 1.96741 1.89887 0.92061 0.99271 0.99296 0.90249 0.92434 0.91433 0.87242 0.90532 0.86378 0.88908 0.86993 0.86103 0.84215 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.98 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.89 9.43 25.60 0.24 -31.64 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.47 5.69 71.23 0.41 11.88 16 10 O -0.41 -19.43 10.30 -145.57 -1.50 -20.93 16 11 C 0.05 1.91 6.33 71.98 0.46 2.37 16 12 C 0.08 2.34 5.85 71.98 0.42 2.76 16 13 O -0.35 -11.19 8.85 -48.77 -0.43 -11.62 16 14 C 0.47 13.17 7.22 71.24 0.51 13.68 16 15 O -0.53 -16.61 15.26 21.95 0.34 -16.28 16 16 C -0.04 -0.81 3.37 -11.62 -0.04 -0.85 16 17 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.10 -1.58 6.32 31.51 0.20 -1.38 16 19 C -0.07 -1.10 6.47 30.52 0.20 -0.90 16 20 C -0.09 -1.84 6.05 -19.57 -0.12 -1.96 16 21 C -0.10 -2.48 5.59 -19.60 -0.11 -2.59 16 22 C -0.10 -2.89 9.59 22.30 0.21 -2.68 16 23 C -0.12 -3.10 10.04 22.24 0.22 -2.87 16 24 C -0.10 -2.36 9.83 22.27 0.22 -2.15 16 25 C -0.04 -0.77 6.32 22.35 0.14 -0.63 16 26 Cl -0.06 -1.19 28.71 -2.72 -0.08 -1.27 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 33 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 34 H 0.08 1.52 7.07 -2.39 -0.02 1.50 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 4.15 7.03 -2.91 -0.02 4.13 16 39 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -69.29 358.58 5.11 -64.18 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.05 Total: 10.90 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.43 Total: -15.96 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -1.60 Total: -48.83 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -69.29 5.11 -64.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815229550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.235 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds