Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47042 * 269.99925 * 3 2 1 5 5 H 1.48498 * 109.47035 * 29.99692 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99700 * 3 2 1 7 7 C 1.37869 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00425 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46744 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.46866 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54326 * 68.37579 * 12 11 10 14 14 O 1.42097 * 110.54474 * 291.62182 * 12 11 10 15 15 N 1.65608 * 104.44945 * 179.97438 * 12 11 10 16 16 C 1.46495 * 119.99695 * 64.99881 * 15 12 11 17 17 C 1.50701 * 109.47031 * 165.00069 * 16 15 12 18 18 N 1.29905 * 124.85730 * 89.69956 * 17 16 15 19 19 C 1.36058 * 108.80085 * 179.90013 * 18 17 16 20 20 C 1.39584 * 133.80548 * 180.09837 * 19 18 17 21 21 C 1.37686 * 119.73136 * 180.25652 * 20 19 18 22 22 C 1.38718 * 120.42026 * 0.04667 * 21 20 19 23 23 C 1.37914 * 120.47816 * 359.95028 * 22 21 20 24 24 C 1.38675 * 119.87215 * 0.02658 * 23 22 21 25 25 O 1.34232 * 124.85441 * 269.99864 * 17 16 15 26 26 H 0.97004 * 120.00276 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47010 * 60.00180 * 9 7 2 28 28 H 1.09006 * 109.47122 * 299.99968 * 9 7 2 29 29 H 1.08993 * 109.47351 * 60.00060 * 10 9 7 30 30 H 1.08998 * 109.46530 * 299.99801 * 10 9 7 31 31 H 1.08996 * 109.47800 * 59.99786 * 11 10 9 32 32 H 1.09006 * 109.47089 * 299.99451 * 11 10 9 33 33 H 0.96999 * 120.00176 * 245.00119 * 15 12 11 34 34 H 1.09000 * 109.47742 * 285.00040 * 16 15 12 35 35 H 1.09003 * 109.47545 * 44.99964 * 16 15 12 36 36 H 1.08000 * 120.13758 * 0.30340 * 20 19 18 37 37 H 1.08004 * 119.78938 * 180.02562 * 21 20 19 38 38 H 1.08001 * 119.75876 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.06401 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 16 6.1563 -4.3466 0.0028 13 8 5.8612 -4.9803 -1.2343 14 8 5.8592 -4.9801 1.2396 15 7 7.8060 -4.2017 0.0035 16 6 8.4882 -3.6031 1.1534 17 6 9.9609 -3.9148 1.0819 18 7 10.8472 -3.1789 0.4816 19 6 12.0685 -3.7622 0.6209 20 6 13.3543 -3.4256 0.1944 21 6 14.4132 -4.2504 0.5013 22 6 14.2097 -5.4130 1.2301 23 6 12.9449 -5.7580 1.6580 24 6 11.8669 -4.9387 1.3583 25 8 10.5435 -4.9955 1.6245 26 1 -0.4851 0.8401 -0.0004 27 1 3.8745 -0.6799 0.8911 28 1 3.8752 -0.6802 -0.8889 29 1 3.6586 -3.1501 -0.8892 30 1 3.6579 -3.1504 0.8908 31 1 5.9142 -2.1229 0.8926 32 1 5.9156 -2.1223 -0.8874 33 1 8.3205 -4.5130 -0.7576 34 1 8.3444 -2.5227 1.1394 35 1 8.0745 -4.0127 2.0750 36 1 13.5180 -2.5216 -0.3732 37 1 15.4086 -3.9907 0.1721 38 1 15.0480 -6.0524 1.4644 39 1 12.7942 -6.6645 2.2254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820717271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = -38.648559 kcal Electronic energy + Delta-G solvation = -23802.659372 eV Core-core repulsion = 20031.956966 eV Total energy + Delta-G solvation = -3770.702406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.71431 -38.52963 -37.11625 -36.16001 -35.89013 -34.90277 -34.85814 -32.23943 -31.16344 -30.47285 -28.42763 -27.23546 -23.69010 -23.63229 -22.83128 -22.03869 -20.58851 -19.52707 -18.61881 -17.98994 -17.62141 -17.27317 -16.95583 -16.63459 -16.05020 -15.80364 -15.22539 -14.74130 -14.58565 -14.35560 -14.21671 -14.18812 -13.64710 -12.96151 -12.94026 -12.73520 -12.38390 -12.28516 -12.19406 -12.03986 -12.01014 -11.97773 -11.80831 -11.62799 -11.04986 -10.96768 -10.94264 -10.20226 -10.10389 -9.87270 -9.53958 -9.31829 -9.28021 -8.98571 -8.59966 -6.09534 -4.09126 0.03356 0.31587 0.72693 1.83282 1.97025 2.68825 3.15519 3.18480 3.26253 3.34025 3.35494 3.75931 4.00643 4.19661 4.27621 4.39314 4.49495 4.53753 4.66458 4.74058 4.85769 4.92564 4.95272 4.99613 5.23066 5.25094 5.35681 5.53270 5.69232 5.69909 5.78947 5.82664 6.09659 6.11587 6.21914 6.52880 6.63658 7.10275 7.12006 7.24128 7.69435 8.45941 8.94719 9.51402 11.03630 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002347 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.621731 B =11925.756244 C =12759.011194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.098 4.098 11 C -0.614 4.614 12 S 2.603 3.397 13 O -0.952 6.952 14 O -0.954 6.954 15 N -1.123 6.123 16 C 0.209 3.791 17 C 0.244 3.756 18 N -0.459 5.459 19 C 0.017 3.983 20 C -0.057 4.057 21 C -0.121 4.121 22 C -0.091 4.091 23 C -0.093 4.093 24 C 0.012 3.988 25 O -0.205 6.205 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.016 0.984 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.420 0.580 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.989 -8.889 2.831 32.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.138 4.138 11 C -0.746 4.746 12 S 2.699 3.301 13 O -0.942 6.942 14 O -0.944 6.944 15 N -0.882 5.882 16 C 0.082 3.918 17 C 0.031 3.969 18 N -0.189 5.189 19 C -0.095 4.095 20 C -0.076 4.076 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.039 4.039 25 O -0.095 6.095 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.255 0.745 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 30.139 -9.007 2.700 31.571 hybrid contribution 0.909 0.911 -0.013 1.287 sum 31.047 -8.096 2.687 32.198 Atomic orbital electron populations 1.69910 1.06292 1.27000 1.50617 1.25031 0.94770 0.99204 0.94450 0.86770 0.80311 0.83588 0.78542 1.20233 1.21292 1.19015 1.21123 0.89238 0.94775 1.51433 0.90722 1.19536 0.97355 0.90634 0.96809 1.21335 0.86389 1.03072 1.02968 1.30603 1.09699 1.22693 1.11571 1.05382 0.72053 0.78219 0.74458 1.93611 1.82014 1.73611 1.44978 1.93592 1.82387 1.72847 1.45548 1.55898 1.26944 1.78490 1.26827 1.19733 0.80173 1.00450 0.91460 1.26183 0.97117 0.81869 0.91758 1.70671 0.98527 1.29285 1.20453 1.19931 0.93619 0.93864 1.02057 1.20379 0.88418 1.00169 0.98641 1.21094 0.99074 0.94637 0.99249 1.21074 0.95758 0.97019 0.97019 1.19949 0.88911 0.99645 1.02701 1.20411 0.82825 0.98918 1.01702 1.84552 1.18712 1.42685 1.63562 0.92614 0.96097 0.96543 0.90865 0.90810 0.85220 0.84856 0.74534 0.86553 0.86501 0.84425 0.84355 0.84055 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.53 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.81 5.16 -26.73 -0.14 -1.95 16 11 C -0.61 -7.95 6.07 37.16 0.23 -7.72 16 12 S 2.60 33.57 5.46 -107.50 -0.59 32.98 16 13 O -0.95 -15.45 18.08 -57.54 -1.04 -16.49 16 14 O -0.95 -14.93 17.50 -57.54 -1.01 -15.94 16 15 N -1.12 -10.91 5.88 -11.66 -0.07 -10.98 16 16 C 0.21 1.78 6.75 -5.20 -0.04 1.75 16 17 C 0.24 2.58 7.63 -13.09 -0.10 2.48 16 18 N -0.46 -5.30 11.34 -8.70 -0.10 -5.40 16 19 C 0.02 0.18 7.24 -84.71 -0.61 -0.43 16 20 C -0.06 -0.45 10.10 -39.28 -0.40 -0.85 16 21 C -0.12 -0.67 10.02 -39.61 -0.40 -1.06 16 22 C -0.09 -0.48 10.03 -39.52 -0.40 -0.87 16 23 C -0.09 -0.68 10.06 -39.54 -0.40 -1.08 16 24 C 0.01 0.12 7.43 -38.64 -0.29 -0.16 16 25 O -0.20 -2.30 10.77 3.63 0.04 -2.26 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 28 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.13 1.49 8.14 -51.92 -0.42 1.06 16 33 H 0.42 3.75 8.61 -34.48 -0.30 3.46 16 34 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 0.87 7.70 -51.93 -0.40 0.47 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 38 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -37.63 351.17 -9.30 -46.93 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.85 Total: -0.56 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.08 Total: -23.39 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.61 Total: -43.07 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -2.01 Total: -34.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: 33.57 SS G_CDS: -0.59 Total: 32.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.63 -9.30 -46.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820717271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.281 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds