Wall clock time and date at job start Tue Mar 31 2020 14:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47042 * 269.99925 * 3 2 1 5 5 H 1.48498 * 109.47035 * 29.99692 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99700 * 3 2 1 7 7 C 1.37869 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00425 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46744 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.46866 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54326 * 68.37579 * 12 11 10 14 14 O 1.42097 * 110.54474 * 291.62182 * 12 11 10 15 15 N 1.65608 * 104.44945 * 179.97438 * 12 11 10 16 16 C 1.46495 * 119.99695 * 64.99881 * 15 12 11 17 17 C 1.50701 * 109.47031 * 165.00069 * 16 15 12 18 18 N 1.29905 * 124.85730 * 89.69956 * 17 16 15 19 19 C 1.36058 * 108.80085 * 179.90013 * 18 17 16 20 20 C 1.39584 * 133.80548 * 180.09837 * 19 18 17 21 21 C 1.37686 * 119.73136 * 180.25652 * 20 19 18 22 22 C 1.38718 * 120.42026 * 0.04667 * 21 20 19 23 23 C 1.37914 * 120.47816 * 359.95028 * 22 21 20 24 24 C 1.38675 * 119.87215 * 0.02658 * 23 22 21 25 25 O 1.34232 * 124.85441 * 269.99864 * 17 16 15 26 26 H 0.97004 * 120.00276 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47010 * 60.00180 * 9 7 2 28 28 H 1.09006 * 109.47122 * 299.99968 * 9 7 2 29 29 H 1.08993 * 109.47351 * 60.00060 * 10 9 7 30 30 H 1.08998 * 109.46530 * 299.99801 * 10 9 7 31 31 H 1.08996 * 109.47800 * 59.99786 * 11 10 9 32 32 H 1.09006 * 109.47089 * 299.99451 * 11 10 9 33 33 H 0.96999 * 120.00176 * 245.00119 * 15 12 11 34 34 H 1.09000 * 109.47742 * 285.00040 * 16 15 12 35 35 H 1.09003 * 109.47545 * 44.99964 * 16 15 12 36 36 H 1.08000 * 120.13758 * 0.30340 * 20 19 18 37 37 H 1.08004 * 119.78938 * 180.02562 * 21 20 19 38 38 H 1.08001 * 119.75876 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.06401 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 16 6.1563 -4.3466 0.0028 13 8 5.8612 -4.9803 -1.2343 14 8 5.8592 -4.9801 1.2396 15 7 7.8060 -4.2017 0.0035 16 6 8.4882 -3.6031 1.1534 17 6 9.9609 -3.9148 1.0819 18 7 10.8472 -3.1789 0.4816 19 6 12.0685 -3.7622 0.6209 20 6 13.3543 -3.4256 0.1944 21 6 14.4132 -4.2504 0.5013 22 6 14.2097 -5.4130 1.2301 23 6 12.9449 -5.7580 1.6580 24 6 11.8669 -4.9387 1.3583 25 8 10.5435 -4.9955 1.6245 26 1 -0.4851 0.8401 -0.0004 27 1 3.8745 -0.6799 0.8911 28 1 3.8752 -0.6802 -0.8889 29 1 3.6586 -3.1501 -0.8892 30 1 3.6579 -3.1504 0.8908 31 1 5.9142 -2.1229 0.8926 32 1 5.9156 -2.1223 -0.8874 33 1 8.3205 -4.5130 -0.7576 34 1 8.3444 -2.5227 1.1394 35 1 8.0745 -4.0127 2.0750 36 1 13.5180 -2.5216 -0.3732 37 1 15.4086 -3.9907 0.1721 38 1 15.0480 -6.0524 1.4644 39 1 12.7942 -6.6645 2.2254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820717271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:04 Heat of formation + Delta-G solvation = -69.723586 kcal Electronic energy + Delta-G solvation = -23804.006887 eV Core-core repulsion = 20031.956966 eV Total energy + Delta-G solvation = -3772.049921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.38050 -39.05912 -38.26513 -37.14108 -36.82776 -36.47742 -35.60095 -34.22719 -31.68725 -31.10118 -30.13841 -27.89142 -25.38306 -24.25081 -23.41108 -22.72244 -22.23328 -20.52575 -19.27057 -18.96727 -18.80493 -18.40649 -17.95034 -17.54469 -17.19757 -16.62461 -16.21199 -16.11763 -15.59787 -15.28270 -15.06478 -14.88297 -14.84443 -14.32859 -14.01804 -13.62760 -13.54913 -13.28386 -13.25598 -13.18769 -13.17861 -13.11921 -12.67826 -12.58202 -12.53967 -12.50571 -11.81962 -11.60833 -11.60582 -11.40263 -11.34900 -10.75525 -10.65998 -9.87766 -9.56861 -8.27899 -6.33619 -0.89008 -0.40189 0.17279 1.14109 1.34419 1.39122 1.41307 1.52856 1.80487 2.38175 2.54228 2.61138 2.73338 3.07527 3.20411 3.41656 3.64728 3.76754 3.94756 3.97928 4.07403 4.21812 4.22647 4.30132 4.37134 4.47218 4.47609 4.66142 4.83175 4.90289 5.00148 5.01470 5.10921 5.29533 5.35256 5.38778 5.50173 5.65260 5.66822 5.77059 6.27465 6.42672 6.75171 7.30991 8.88944 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.002347 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.621731 B =11925.756244 C =12759.011194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.002 4.002 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.543 4.543 8 H 0.030 0.970 9 C -0.007 4.007 10 C -0.105 4.105 11 C -0.606 4.606 12 S 2.630 3.370 13 O -0.989 6.989 14 O -0.984 6.984 15 N -1.112 6.112 16 C 0.201 3.799 17 C 0.234 3.766 18 N -0.476 5.476 19 C -0.016 4.016 20 C -0.073 4.073 21 C -0.111 4.111 22 C -0.078 4.078 23 C -0.106 4.106 24 C -0.016 4.016 25 O -0.221 6.221 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.425 0.575 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.209 -7.782 3.086 36.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.581 4.581 8 H 0.048 0.952 9 C -0.045 4.045 10 C -0.145 4.145 11 C -0.738 4.738 12 S 2.726 3.274 13 O -0.979 6.979 14 O -0.974 6.974 15 N -0.873 5.873 16 C 0.075 3.925 17 C 0.020 3.980 18 N -0.207 5.207 19 C -0.127 4.127 20 C -0.092 4.092 21 C -0.130 4.130 22 C -0.095 4.095 23 C -0.125 4.125 24 C -0.065 4.065 25 O -0.113 6.113 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.261 0.739 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.191 0.809 38 H 0.197 0.803 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 34.385 -7.931 2.954 35.412 hybrid contribution -0.311 0.456 -0.087 0.559 sum 34.074 -7.475 2.867 35.002 Atomic orbital electron populations 1.70090 1.08552 1.28238 1.52500 1.26132 0.95705 1.03957 0.94012 0.85589 0.79817 0.77551 0.79265 1.19206 1.21370 1.15766 1.21581 0.92521 0.93204 1.50764 0.95206 1.19525 0.93518 0.93576 0.97901 1.21197 0.90464 1.00420 1.02390 1.30497 1.05437 1.23158 1.14751 1.04347 0.72330 0.77811 0.72891 1.93559 1.83115 1.74769 1.46474 1.93554 1.83338 1.73817 1.46654 1.55479 1.25607 1.78614 1.27553 1.20108 0.79101 1.02189 0.91082 1.26454 0.97653 0.81846 0.91998 1.70605 0.99267 1.29961 1.20918 1.20354 0.94322 0.94570 1.03460 1.20713 0.88067 1.01234 0.99140 1.21566 0.99880 0.93798 0.97722 1.21594 0.95872 0.96982 0.95080 1.20380 0.88990 1.00010 1.03135 1.20921 0.82974 0.99880 1.02768 1.84514 1.19506 1.43161 1.64084 0.92527 0.94565 0.95104 0.91947 0.91471 0.81727 0.82242 0.73921 0.83522 0.85583 0.83521 0.80910 0.80340 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.44 0.30 -59.69 16 2 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 3 Si 0.96 42.78 27.47 68.60 1.88 44.67 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.23 -9.29 6.54 99.48 0.65 -8.64 16 7 C -0.54 -30.99 9.66 25.60 0.25 -30.74 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.11 -3.79 5.16 30.60 0.16 -3.63 16 11 C -0.61 -14.00 6.07 71.98 0.44 -13.57 16 12 S 2.63 64.97 5.46 -56.49 -0.31 64.66 16 13 O -0.99 -31.91 18.08 -127.65 -2.31 -34.21 16 14 O -0.98 -30.25 17.50 -127.65 -2.23 -32.49 16 15 N -1.11 -20.01 5.88 -190.80 -1.12 -21.13 16 16 C 0.20 3.09 6.75 85.63 0.58 3.67 16 17 C 0.23 4.82 7.63 88.39 0.67 5.49 16 18 N -0.48 -10.80 11.34 -296.27 -3.36 -14.16 16 19 C -0.02 -0.33 7.24 39.32 0.28 -0.04 16 20 C -0.07 -1.03 10.10 22.46 0.23 -0.81 16 21 C -0.11 -0.87 10.02 22.25 0.22 -0.65 16 22 C -0.08 -0.57 10.03 22.31 0.22 -0.34 16 23 C -0.11 -1.39 10.06 22.30 0.22 -1.17 16 24 C -0.02 -0.32 7.43 22.88 0.17 -0.15 16 25 O -0.22 -5.02 10.77 -9.94 -0.11 -5.13 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.04 1.47 7.20 -2.39 -0.02 1.46 16 28 H 0.03 1.26 7.57 -2.38 -0.02 1.24 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.16 2.67 8.14 -2.39 -0.02 2.66 16 32 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.43 7.20 8.61 -96.74 -0.83 6.37 16 34 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.13 1.69 7.70 -2.39 -0.02 1.67 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.18 -0.05 8.06 -2.91 -0.02 -0.08 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -85.68 351.17 -3.03 -88.71 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.19 Total: 10.49 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 4.03 Total: -41.72 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.18 Total: -94.97 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -4.65 Total: -71.83 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 64.97 SS G_CDS: -0.31 Total: 64.66 kcal Total: -85.68 -3.03 -88.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820717271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.983 kcal (2) G-P(sol) polarization free energy of solvation -85.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds