Wall clock time and date at job start Tue Mar 31 2020 14:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48504 * 109.47185 * 270.00044 * 3 2 1 5 5 H 1.48502 * 109.47158 * 29.99654 * 3 2 1 6 6 H 1.48497 * 109.47463 * 149.99971 * 3 2 1 7 7 C 1.38636 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.35773 * 116.99946 * 185.48235 * 9 7 2 11 11 C 1.38741 * 120.09062 * 5.80212 * 10 9 7 12 12 C 1.38335 * 119.97703 * 180.02562 * 11 10 9 13 13 F 1.35106 * 119.92305 * 180.02562 * 12 11 10 14 14 C 1.38553 * 120.15351 * 0.02610 * 12 11 10 15 15 C 1.38185 * 120.17978 * 359.95675 * 14 12 11 16 16 C 1.38716 * 120.01821 * 0.04063 * 15 14 12 17 17 N 1.40088 * 120.07582 * 180.25408 * 16 15 14 18 18 C 1.34777 * 119.99974 * 325.91516 * 17 16 15 19 19 O 1.21302 * 120.00194 * 354.39394 * 18 17 16 20 20 C 1.50693 * 120.00095 * 174.38847 * 18 17 16 21 21 N 1.46498 * 109.47288 * 179.97438 * 20 18 17 22 22 C 1.47101 * 125.55723 * 90.00730 * 21 20 18 23 23 C 1.54092 * 103.77575 * 179.97438 * 22 21 20 24 24 O 1.45705 * 104.00828 * 359.97438 * 23 22 21 25 25 C 1.33779 * 109.47524 * 359.76042 * 24 23 22 26 26 O 1.21505 * 123.06738 * 180.24344 * 25 24 23 27 27 H 0.97000 * 120.00172 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.00615 * 0.02562 * 11 10 9 29 29 H 1.08003 * 119.90732 * 179.97438 * 14 12 11 30 30 H 1.07995 * 119.99270 * 180.02562 * 15 14 12 31 31 H 0.96995 * 120.00036 * 145.91412 * 17 16 15 32 32 H 1.09000 * 109.47532 * 300.00162 * 20 18 17 33 33 H 1.09003 * 109.47100 * 59.99984 * 20 18 17 34 34 H 1.08998 * 110.55739 * 298.54479 * 22 21 20 35 35 H 1.08998 * 110.56547 * 61.40242 * 22 21 20 36 36 H 1.08996 * 110.52034 * 118.62714 * 23 22 21 37 37 H 1.08995 * 110.51846 * 241.22716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0696 -3.5041 0.1145 11 6 3.4355 -3.4286 0.3458 12 6 4.1820 -4.5874 0.4621 13 9 5.5119 -4.5126 0.6879 14 6 3.5689 -5.8246 0.3476 15 6 2.2088 -5.9073 0.1176 16 6 1.4533 -4.7500 -0.0002 17 7 0.0735 -4.8324 -0.2281 18 6 -0.4268 -5.8333 -0.9794 19 8 0.3234 -6.6031 -1.5416 20 6 -1.9182 -5.9963 -1.1208 21 7 -2.2043 -7.1469 -1.9812 22 6 -2.3844 -8.5333 -1.5238 23 6 -2.6583 -9.3157 -2.8228 24 8 -2.6050 -8.2987 -3.8649 25 6 -2.3512 -7.1070 -3.3125 26 8 -2.2585 -6.0827 -3.9595 27 1 -0.4850 0.8400 -0.0004 28 1 3.9158 -2.4653 0.4350 29 1 4.1555 -6.7269 0.4386 30 1 1.7340 -6.8733 0.0292 31 1 -0.5218 -4.1692 0.1548 32 1 -2.3609 -6.1582 -0.1380 33 1 -2.3415 -5.0959 -1.5661 34 1 -1.4777 -8.8980 -1.0411 35 1 -3.2355 -8.6056 -0.8467 36 1 -1.8879 -10.0696 -2.9844 37 1 -3.6442 -9.7792 -2.7890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820896190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:24 Heat of formation + Delta-G solvation = -159.594258 kcal Electronic energy + Delta-G solvation = -26983.162086 eV Core-core repulsion = 22641.001905 eV Total energy + Delta-G solvation = -4342.160182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.86029 -42.62597 -41.57564 -40.20767 -38.38183 -38.07902 -36.41273 -35.60479 -34.33041 -31.67633 -31.07157 -30.21347 -28.55425 -27.39245 -24.59467 -24.29450 -23.53164 -22.51851 -21.37023 -20.17781 -19.62395 -18.81486 -18.63903 -18.03149 -17.85620 -17.68978 -17.12055 -16.96775 -16.56815 -16.40782 -15.99205 -15.67158 -15.48950 -15.43911 -15.22592 -15.05240 -14.88055 -14.77284 -14.05827 -13.87035 -13.80833 -13.44319 -13.35117 -13.10661 -12.94889 -12.61349 -12.37064 -12.15016 -11.89781 -11.73174 -11.69140 -11.34654 -11.07434 -10.84301 -9.99536 -9.59890 -8.80525 -8.53116 -6.19004 0.13177 0.43214 1.18158 1.36195 1.42736 1.48220 1.51268 1.59841 2.11287 2.18337 2.61233 2.64147 3.03320 3.14774 3.38100 3.42269 3.57634 3.68496 3.91540 4.03788 4.14647 4.27116 4.32279 4.40791 4.51946 4.60168 4.78523 4.83285 4.87499 4.99014 5.16847 5.20249 5.26486 5.31727 5.50120 5.90803 5.99102 6.26962 6.41105 6.85110 6.91506 7.05770 7.59123 8.67343 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003684 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.367601 B = 7598.511154 C = 9378.861248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.007 4.007 3 Si 1.010 2.990 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.097 0.903 9 O -0.201 6.201 10 C 0.131 3.869 11 C -0.267 4.267 12 C 0.123 3.877 13 F -0.145 7.145 14 C -0.205 4.205 15 C -0.046 4.046 16 C 0.060 3.940 17 N -0.648 5.648 18 C 0.490 3.510 19 O -0.558 6.558 20 C 0.136 3.864 21 N -0.610 5.610 22 C 0.064 3.936 23 C 0.036 3.964 24 O -0.348 6.348 25 C 0.640 3.360 26 O -0.580 6.580 27 H 0.276 0.724 28 H 0.134 0.866 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.421 0.579 32 H 0.176 0.824 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -17.862 4.188 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.493 4.493 8 H 0.114 0.886 9 O -0.106 6.106 10 C 0.077 3.923 11 C -0.288 4.288 12 C 0.103 3.897 13 F -0.123 7.123 14 C -0.224 4.224 15 C -0.067 4.067 16 C -0.035 4.035 17 N -0.293 5.293 18 C 0.277 3.723 19 O -0.436 6.436 20 C 0.011 3.989 21 N -0.356 5.356 22 C -0.057 4.057 23 C -0.037 4.037 24 O -0.257 6.257 25 C 0.395 3.605 26 O -0.468 6.468 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.258 0.742 32 H 0.194 0.806 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.342 -17.801 3.216 19.169 hybrid contribution 0.721 1.530 0.059 1.693 sum -5.622 -16.271 3.275 17.524 Atomic orbital electron populations 1.70103 1.07472 1.29062 1.47213 1.26361 0.96849 1.02067 0.95443 0.84694 0.78017 0.75215 0.79056 1.19403 1.19138 1.18008 1.21710 0.92439 0.81173 1.53974 0.88551 1.83898 1.34663 1.11880 1.80174 1.19229 0.90208 0.87342 0.95522 1.20958 0.94162 0.99034 1.14607 1.17480 0.76941 0.94242 1.01012 1.91432 1.31385 1.97343 1.92189 1.20873 0.95207 0.96241 1.10127 1.20685 0.92835 0.96882 0.96273 1.17133 0.85039 0.90704 1.10597 1.43223 1.05556 1.29716 1.50849 1.21950 0.93130 0.80249 0.76934 1.90670 1.61350 1.45236 1.46307 1.21259 0.89637 0.89460 0.98556 1.47567 1.71956 1.10647 1.05462 1.23259 1.06092 0.78179 0.98147 1.24806 1.07759 0.89225 0.81920 1.87241 1.84499 1.17780 1.36228 1.18700 0.75752 0.83548 0.82513 1.91019 1.58118 1.30865 1.66835 0.91523 0.84830 0.82300 0.82926 0.74176 0.80632 0.86615 0.88089 0.84534 0.86031 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.76 13.67 21.61 0.30 -50.46 16 2 C -0.01 -0.38 5.49 84.83 0.47 0.09 16 3 Si 1.01 41.12 29.55 68.60 2.03 43.15 16 4 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.42 -22.82 9.44 67.92 0.64 -22.18 16 8 H 0.10 4.99 5.30 -2.91 -0.02 4.97 16 9 O -0.20 -10.86 9.30 -22.84 -0.21 -11.07 16 10 C 0.13 6.09 6.66 22.69 0.15 6.24 16 11 C -0.27 -11.71 9.11 22.41 0.20 -11.50 16 12 C 0.12 4.70 7.29 22.37 0.16 4.86 16 13 F -0.14 -5.25 17.26 44.97 0.78 -4.47 16 14 C -0.20 -6.84 10.02 22.33 0.22 -6.61 16 15 C -0.05 -1.62 8.66 22.37 0.19 -1.42 16 16 C 0.06 2.40 6.28 38.23 0.24 2.64 16 17 N -0.65 -22.10 5.20 -303.03 -1.57 -23.67 16 18 C 0.49 15.08 7.63 87.65 0.67 15.75 16 19 O -0.56 -20.61 14.19 -3.10 -0.04 -20.66 16 20 C 0.14 2.84 6.50 85.63 0.56 3.40 16 21 N -0.61 -13.25 2.45 -955.82 -2.34 -15.59 16 22 C 0.06 0.63 7.70 86.63 0.67 1.30 16 23 C 0.04 0.35 8.23 72.35 0.60 0.95 16 24 O -0.35 -8.64 11.09 -47.39 -0.53 -9.16 16 25 C 0.64 19.85 8.85 129.91 1.15 21.00 16 26 O -0.58 -24.54 17.54 19.67 0.34 -24.19 16 27 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.13 6.01 5.71 -2.91 -0.02 5.99 16 29 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 30 H 0.15 4.76 6.47 -2.91 -0.02 4.74 16 31 H 0.42 13.57 8.55 -92.71 -0.79 12.77 16 32 H 0.18 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 2.71 7.92 -2.39 -0.02 2.69 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.14 0.32 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -82.76 334.46 5.03 -77.72 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.37 Total: 23.90 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.92 Total: 14.50 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -3.62 Total: -89.72 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -0.44 Total: -65.08 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -82.76 5.03 -77.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820896190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.870 kcal (2) G-P(sol) polarization free energy of solvation -82.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds