Wall clock time and date at job start Tue Mar 31 2020 14:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47418 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47327 * 299.99917 * 3 2 1 6 6 H 1.48506 * 109.47321 * 60.00257 * 3 2 1 7 7 C 1.37872 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00074 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.76201 * 102.99596 * 180.02562 * 10 9 7 12 12 C 1.38724 * 120.10569 * 359.97438 * 11 10 9 13 13 C 1.38247 * 119.99820 * 179.97438 * 12 11 10 14 14 C 1.38275 * 120.19312 * 0.02562 * 13 12 11 15 15 C 1.38284 * 120.20418 * 0.02562 * 14 13 12 16 16 C 1.38641 * 120.00818 * 359.97438 * 15 14 13 17 17 N 1.40000 * 120.10373 * 179.97438 * 16 15 14 18 18 C 1.46502 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.50709 * 109.46824 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99658 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00010 * 179.97438 * 19 18 17 22 22 C 1.46494 * 119.99953 * 179.97438 * 21 19 18 23 23 C 1.50702 * 109.47194 * 180.02562 * 22 21 19 24 24 O 1.20823 * 119.99832 * 359.97438 * 23 22 21 25 25 O 1.34225 * 120.00273 * 180.02562 * 23 22 21 26 26 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47174 * 59.99905 * 9 7 2 28 28 H 1.09004 * 109.47152 * 299.99649 * 9 7 2 29 29 H 1.08007 * 120.00050 * 359.97438 * 12 11 10 30 30 H 1.07996 * 119.90240 * 180.28222 * 13 12 11 31 31 H 1.08004 * 119.89329 * 179.97438 * 14 13 12 32 32 H 1.07997 * 119.99813 * 179.97438 * 15 14 13 33 33 H 0.97001 * 120.00243 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.47103 * 299.99203 * 18 17 16 35 35 H 1.08999 * 109.47301 * 59.99857 * 18 17 16 36 36 H 0.97003 * 119.99741 * 0.02562 * 21 19 18 37 37 H 1.09003 * 109.47420 * 300.00199 * 22 21 19 38 38 H 1.08999 * 109.47007 * 60.00437 * 22 21 19 39 39 H 0.96701 * 117.00425 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0021 11 6 1.3823 -5.2948 0.0011 12 6 0.0037 -5.1409 0.0001 13 6 -0.8161 -6.2541 -0.0012 14 6 -0.2660 -7.5228 -0.0009 15 6 1.1072 -7.6857 0.0012 16 6 1.9371 -6.5751 0.0025 17 7 3.3277 -6.7377 0.0051 18 6 3.9077 -8.0830 0.0060 19 6 5.4114 -7.9816 0.0083 20 8 5.9457 -6.8928 0.0086 21 7 6.1623 -9.1008 0.0099 22 6 7.6239 -9.0023 0.0116 23 6 8.2207 -10.3861 0.0126 24 8 7.4991 -11.3551 0.0124 25 8 9.5539 -10.5420 0.0147 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 -0.4293 -4.1514 0.0003 30 1 -1.8892 -6.1326 -0.0066 31 1 -0.9110 -8.3891 -0.0015 32 1 1.5332 -8.6780 0.0018 33 1 3.9070 -5.9597 0.0056 34 1 3.5782 -8.6202 0.8953 35 1 3.5815 -8.6199 -0.8847 36 1 5.7349 -9.9716 0.0092 37 1 7.9530 -8.4657 -0.8784 38 1 7.9508 -8.4646 0.9016 39 1 9.8899 -11.4488 0.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:40 Heat of formation + Delta-G solvation = -100.590857 kcal Electronic energy + Delta-G solvation = -23364.363769 eV Core-core repulsion = 19590.975343 eV Total energy + Delta-G solvation = -3773.388426 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09961 -40.01932 -38.77902 -36.91434 -35.34095 -34.88112 -33.18857 -30.80848 -30.40458 -28.82957 -28.49659 -26.19034 -23.27183 -22.74028 -22.24273 -21.29148 -20.75911 -18.83274 -18.38228 -17.48190 -16.93058 -16.67482 -16.44138 -16.17471 -15.84544 -15.72041 -15.39161 -14.71462 -14.22506 -14.17837 -13.96445 -13.56202 -13.43138 -13.25166 -13.02318 -12.82397 -12.65040 -12.31296 -12.21612 -12.07870 -11.53653 -11.35421 -10.92348 -10.91540 -10.65165 -10.38997 -9.97265 -9.93620 -9.74455 -9.59582 -9.11804 -8.97319 -8.58542 -7.51554 -6.30108 -6.21374 -4.26066 1.47238 1.73182 1.94695 1.95037 2.18534 2.58434 2.79416 3.25145 3.32364 3.38937 3.56876 3.85614 4.19775 4.24527 4.34765 4.51351 4.65797 4.80464 4.99600 5.08926 5.16219 5.22333 5.38754 5.62217 5.69624 5.79847 5.86544 6.00951 6.28590 6.50349 6.71256 6.86044 6.97646 7.04428 7.07139 7.14474 7.17182 7.53732 7.69326 7.72857 7.95962 7.97005 8.75516 9.37446 10.89967 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002610 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.563414 B =10725.645047 C =12818.458954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.515 4.515 8 H 0.069 0.931 9 C 0.076 3.924 10 S -0.171 6.171 11 C -0.132 4.132 12 C -0.089 4.089 13 C -0.156 4.156 14 C -0.095 4.095 15 C -0.190 4.190 16 C 0.222 3.778 17 N -0.736 5.736 18 C 0.114 3.886 19 C 0.515 3.485 20 O -0.518 6.518 21 N -0.726 5.726 22 C 0.127 3.873 23 C 0.480 3.520 24 O -0.512 6.512 25 O -0.508 6.508 26 H 0.266 0.734 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.417 0.583 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 -23.538 0.015 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.555 4.555 8 H 0.087 0.913 9 C -0.071 4.071 10 S 0.074 5.926 11 C -0.249 4.249 12 C -0.114 4.114 13 C -0.178 4.178 14 C -0.117 4.117 15 C -0.215 4.215 16 C 0.115 3.885 17 N -0.373 5.373 18 C -0.014 4.014 19 C 0.301 3.699 20 O -0.392 6.392 21 N -0.385 5.385 22 C 0.002 3.998 23 C 0.322 3.678 24 O -0.401 6.401 25 O -0.320 6.320 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.257 0.743 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 12.216 -22.477 0.018 25.582 hybrid contribution -0.770 -0.074 -0.003 0.773 sum 11.446 -22.550 0.015 25.289 Atomic orbital electron populations 1.69957 1.06122 1.27328 1.49388 1.24950 0.94994 0.99294 0.94514 0.86282 0.80118 0.82446 0.77753 1.19368 1.20691 1.20696 1.20683 0.93528 0.88617 1.52667 0.91331 1.21329 0.94300 0.90782 1.00676 1.85152 1.17941 0.98149 1.91321 1.21522 0.97145 0.95949 1.10280 1.21193 0.91601 0.99820 0.98827 1.20820 0.99202 0.92261 1.05485 1.20749 0.94038 0.96858 1.00018 1.20410 0.93529 0.96186 1.11371 1.17211 0.82806 0.92069 0.96407 1.44397 1.03495 1.06159 1.83250 1.20894 0.88788 0.88087 1.03680 1.20679 0.89836 0.83725 0.75691 1.90795 1.73719 1.26924 1.47760 1.45642 1.04989 1.10481 1.77339 1.20586 0.81426 0.90847 1.06968 1.23227 0.80730 0.92186 0.71649 1.90746 1.61556 1.41931 1.45834 1.84490 1.23535 1.38768 1.85213 0.92472 0.93892 0.93898 0.85111 0.86580 0.86645 0.86527 0.74260 0.89116 0.89127 0.74836 0.86580 0.86567 0.72230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.56 9.13 -34.44 -0.31 -14.88 16 8 H 0.07 1.94 7.71 -52.48 -0.40 1.53 16 9 C 0.08 1.98 4.09 36.01 0.15 2.13 16 10 S -0.17 -3.86 20.37 -107.50 -2.19 -6.05 16 11 C -0.13 -2.61 6.12 -38.92 -0.24 -2.85 16 12 C -0.09 -1.69 9.36 -39.40 -0.37 -2.06 16 13 C -0.16 -2.45 10.04 -39.56 -0.40 -2.85 16 14 C -0.09 -1.30 10.04 -39.55 -0.40 -1.70 16 15 C -0.19 -2.64 9.31 -39.42 -0.37 -3.01 16 16 C 0.22 3.72 6.66 -83.49 -0.56 3.16 16 17 N -0.74 -11.17 5.66 -59.62 -0.34 -11.51 16 18 C 0.11 1.16 5.40 -5.19 -0.03 1.13 16 19 C 0.51 5.50 7.90 -10.98 -0.09 5.41 16 20 O -0.52 -7.71 15.67 5.56 0.09 -7.63 16 21 N -0.73 -5.38 5.53 -61.47 -0.34 -5.72 16 22 C 0.13 0.79 6.27 -5.20 -0.03 0.76 16 23 C 0.48 2.85 8.40 36.01 0.30 3.15 16 24 O -0.51 -4.33 16.43 -18.75 -0.31 -4.64 16 25 O -0.51 -1.99 13.42 -39.24 -0.53 -2.52 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 28 H 0.04 1.16 7.75 -51.92 -0.40 0.76 16 29 H 0.13 2.67 5.88 -52.48 -0.31 2.36 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.23 6.74 -52.49 -0.35 0.87 16 33 H 0.42 7.32 5.98 -40.82 -0.24 7.08 16 34 H 0.09 0.74 7.95 -51.93 -0.41 0.32 16 35 H 0.09 0.74 7.95 -51.93 -0.41 0.32 16 36 H 0.41 2.47 7.44 -40.82 -0.30 2.17 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.42 -0.06 9.10 45.56 0.41 0.35 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -34.82 354.35 -8.65 -43.47 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.66 Total: 7.71 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.43 Total: -9.83 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.06 Total: -42.27 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.75 Total: -14.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.19 Total: -6.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.82 -8.65 -43.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.125 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds