Wall clock time and date at job start Tue Mar 31 2020 14:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47418 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47327 * 299.99917 * 3 2 1 6 6 H 1.48506 * 109.47321 * 60.00257 * 3 2 1 7 7 C 1.37872 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00074 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.76201 * 102.99596 * 180.02562 * 10 9 7 12 12 C 1.38724 * 120.10569 * 359.97438 * 11 10 9 13 13 C 1.38247 * 119.99820 * 179.97438 * 12 11 10 14 14 C 1.38275 * 120.19312 * 0.02562 * 13 12 11 15 15 C 1.38284 * 120.20418 * 0.02562 * 14 13 12 16 16 C 1.38641 * 120.00818 * 359.97438 * 15 14 13 17 17 N 1.40000 * 120.10373 * 179.97438 * 16 15 14 18 18 C 1.46502 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.50709 * 109.46824 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99658 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00010 * 179.97438 * 19 18 17 22 22 C 1.46494 * 119.99953 * 179.97438 * 21 19 18 23 23 C 1.50702 * 109.47194 * 180.02562 * 22 21 19 24 24 O 1.20823 * 119.99832 * 359.97438 * 23 22 21 25 25 O 1.34225 * 120.00273 * 180.02562 * 23 22 21 26 26 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47174 * 59.99905 * 9 7 2 28 28 H 1.09004 * 109.47152 * 299.99649 * 9 7 2 29 29 H 1.08007 * 120.00050 * 359.97438 * 12 11 10 30 30 H 1.07996 * 119.90240 * 180.28222 * 13 12 11 31 31 H 1.08004 * 119.89329 * 179.97438 * 14 13 12 32 32 H 1.07997 * 119.99813 * 179.97438 * 15 14 13 33 33 H 0.97001 * 120.00243 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.47103 * 299.99203 * 18 17 16 35 35 H 1.08999 * 109.47301 * 59.99857 * 18 17 16 36 36 H 0.97003 * 119.99741 * 0.02562 * 21 19 18 37 37 H 1.09003 * 109.47420 * 300.00199 * 22 21 19 38 38 H 1.08999 * 109.47007 * 60.00437 * 22 21 19 39 39 H 0.96701 * 117.00425 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0021 11 6 1.3823 -5.2948 0.0011 12 6 0.0037 -5.1409 0.0001 13 6 -0.8161 -6.2541 -0.0012 14 6 -0.2660 -7.5228 -0.0009 15 6 1.1072 -7.6857 0.0012 16 6 1.9371 -6.5751 0.0025 17 7 3.3277 -6.7377 0.0051 18 6 3.9077 -8.0830 0.0060 19 6 5.4114 -7.9816 0.0083 20 8 5.9457 -6.8928 0.0086 21 7 6.1623 -9.1008 0.0099 22 6 7.6239 -9.0023 0.0116 23 6 8.2207 -10.3861 0.0126 24 8 7.4991 -11.3551 0.0124 25 8 9.5539 -10.5420 0.0147 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 -0.4293 -4.1514 0.0003 30 1 -1.8892 -6.1326 -0.0066 31 1 -0.9110 -8.3891 -0.0015 32 1 1.5332 -8.6780 0.0018 33 1 3.9070 -5.9597 0.0056 34 1 3.5782 -8.6202 0.8953 35 1 3.5815 -8.6199 -0.8847 36 1 5.7349 -9.9716 0.0092 37 1 7.9530 -8.4657 -0.8784 38 1 7.9508 -8.4646 0.9016 39 1 9.8899 -11.4488 0.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:40 Heat of formation + Delta-G solvation = -126.797255 kcal Electronic energy + Delta-G solvation = -23365.500164 eV Core-core repulsion = 19590.975343 eV Total energy + Delta-G solvation = -3774.524821 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65743 -40.82327 -39.95113 -37.35964 -36.34215 -35.71925 -35.33770 -32.04995 -31.45766 -30.57052 -29.65443 -27.13380 -25.32556 -23.87527 -22.99354 -22.29394 -21.65463 -19.61204 -19.10522 -18.74816 -18.15321 -17.61063 -17.46991 -17.35663 -16.88551 -16.58724 -16.57675 -16.11470 -15.52653 -15.06842 -15.04858 -14.77412 -14.63854 -14.58830 -14.27450 -14.05344 -13.99291 -13.84982 -13.37065 -12.96269 -12.78721 -12.65356 -12.59613 -12.30151 -11.86672 -11.66405 -11.58520 -11.28799 -11.10027 -10.85255 -10.84066 -10.44770 -10.39245 -8.83205 -8.37008 -7.88335 -6.51353 0.44080 0.70168 0.92767 1.01304 1.38101 1.38237 1.38466 1.40366 1.53868 1.90720 2.21906 2.34313 2.64158 2.94233 2.97437 3.54605 3.98677 4.11667 4.16674 4.24893 4.30729 4.33152 4.39167 4.51674 4.59381 4.75761 4.86335 4.87673 5.03343 5.06555 5.28082 5.47750 5.49801 5.53029 5.72663 5.82529 5.93489 6.19618 6.43643 6.55649 6.64028 6.83572 6.97956 7.17034 8.75519 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002610 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.563414 B =10725.645047 C =12818.458954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.088 3.912 10 S -0.186 6.186 11 C -0.170 4.170 12 C -0.111 4.111 13 C -0.165 4.165 14 C -0.074 4.074 15 C -0.180 4.180 16 C 0.222 3.778 17 N -0.746 5.746 18 C 0.108 3.892 19 C 0.516 3.484 20 O -0.568 6.568 21 N -0.709 5.709 22 C 0.121 3.879 23 C 0.493 3.507 24 O -0.538 6.538 25 O -0.505 6.505 26 H 0.272 0.728 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.402 0.598 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.424 0.576 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.571 -26.653 0.015 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.059 4.059 10 S 0.057 5.943 11 C -0.287 4.287 12 C -0.135 4.135 13 C -0.186 4.186 14 C -0.094 4.094 15 C -0.204 4.204 16 C 0.114 3.886 17 N -0.379 5.379 18 C -0.019 4.019 19 C 0.303 3.697 20 O -0.446 6.446 21 N -0.367 5.367 22 C -0.004 4.004 23 C 0.336 3.664 24 O -0.429 6.429 25 O -0.318 6.318 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.153 0.847 31 H 0.180 0.820 32 H 0.182 0.818 33 H 0.239 0.761 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.263 0.737 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 12.824 -25.700 0.017 28.722 hybrid contribution -0.935 0.631 -0.002 1.129 sum 11.889 -25.068 0.015 27.745 Atomic orbital electron populations 1.70067 1.07682 1.28647 1.49624 1.25935 0.95947 1.03098 0.93552 0.85182 0.78687 0.77529 0.78359 1.18961 1.19554 1.19565 1.20997 0.93464 0.90089 1.53498 0.91917 1.20890 0.94445 0.92469 0.98096 1.84837 1.17888 0.98832 1.92697 1.21489 0.96913 0.95555 1.14711 1.21093 0.92031 0.99739 1.00670 1.21088 0.99926 0.92218 1.05384 1.21298 0.94659 0.97143 0.96347 1.20939 0.93337 0.97064 1.09027 1.17443 0.83940 0.91514 0.95717 1.44608 1.02831 1.07782 1.82705 1.21270 0.88224 0.85911 1.06454 1.20798 0.90295 0.83554 0.75033 1.90788 1.74519 1.28855 1.50476 1.45480 1.05491 1.10059 1.75633 1.20689 0.80745 0.91476 1.07467 1.22979 0.81118 0.91421 0.70869 1.90741 1.62247 1.42585 1.47316 1.84452 1.22306 1.40552 1.84536 0.91926 0.96475 0.96484 0.88480 0.84651 0.81973 0.81825 0.76089 0.86028 0.86041 0.73662 0.86163 0.86151 0.70031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.50 13.29 21.44 0.28 -55.21 16 2 C 0.02 0.92 5.46 84.65 0.46 1.38 16 3 Si 0.98 44.91 29.54 68.60 2.03 46.93 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -32.30 9.13 25.60 0.23 -32.07 16 8 H 0.06 3.72 7.71 -2.91 -0.02 3.70 16 9 C 0.09 5.01 4.09 71.24 0.29 5.31 16 10 S -0.19 -8.97 20.37 -56.49 -1.15 -10.12 16 11 C -0.17 -6.95 6.12 22.70 0.14 -6.81 16 12 C -0.11 -4.40 9.36 22.39 0.21 -4.19 16 13 C -0.16 -4.95 10.04 22.28 0.22 -4.72 16 14 C -0.07 -1.69 10.04 22.29 0.22 -1.47 16 15 C -0.18 -4.20 9.31 22.38 0.21 -3.99 16 16 C 0.22 7.12 6.66 38.25 0.25 7.38 16 17 N -0.75 -21.77 5.66 -342.52 -1.94 -23.70 16 18 C 0.11 1.86 5.40 85.64 0.46 2.32 16 19 C 0.52 10.21 7.90 87.66 0.69 10.90 16 20 O -0.57 -16.97 15.67 -3.03 -0.05 -17.02 16 21 N -0.71 -9.02 5.53 -466.78 -2.58 -11.60 16 22 C 0.12 1.33 6.27 85.63 0.54 1.87 16 23 C 0.49 4.90 8.40 71.24 0.60 5.50 16 24 O -0.54 -7.99 16.43 21.97 0.36 -7.63 16 25 O -0.50 -2.88 13.42 -51.37 -0.69 -3.57 16 26 H 0.27 15.13 8.31 -92.70 -0.77 14.35 16 27 H 0.02 1.02 7.75 -2.39 -0.02 1.00 16 28 H 0.02 1.01 7.75 -2.39 -0.02 1.00 16 29 H 0.10 4.41 5.88 -2.91 -0.02 4.39 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.16 2.30 6.74 -2.91 -0.02 2.28 16 33 H 0.40 14.36 5.98 -92.71 -0.55 13.81 16 34 H 0.12 1.39 7.95 -2.39 -0.02 1.37 16 35 H 0.12 1.39 7.95 -2.39 -0.02 1.37 16 36 H 0.42 3.84 7.44 -92.71 -0.69 3.15 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.44 -1.14 9.10 -74.06 -0.67 -1.82 16 Total: -1.00 -81.21 354.35 0.01 -81.20 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.79 Total: 19.32 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.54 Total: -18.60 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -4.23 Total: -90.52 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.38 Total: -28.22 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.15 Total: -10.12 kcal Total: -81.21 0.01 -81.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.602 kcal (2) G-P(sol) polarization free energy of solvation -81.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds