Wall clock time and date at job start Tue Mar 31 2020 13:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45208 * 108.90137 * 2 1 4 4 C 1.34705 * 116.99906 * 300.70443 * 3 2 1 5 5 O 1.21472 * 119.99812 * 359.97438 * 4 3 2 6 6 C 1.47760 * 120.00042 * 179.97438 * 4 3 2 7 7 C 1.39969 * 120.03295 * 359.97438 * 6 4 3 8 8 C 1.38315 * 120.35775 * 179.97438 * 7 6 4 9 9 C 1.37763 * 120.41592 * 359.97438 * 8 7 6 10 10 C 1.40754 * 120.04863 * 359.97438 * 9 8 7 11 11 C 1.41447 * 120.17178 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99525 * 24.37700 * 11 10 9 13 13 C 1.39938 * 119.99905 * 204.36805 * 11 10 9 14 14 N 1.30826 * 119.99748 * 17.75632 * 13 11 10 15 15 Si 1.86798 * 119.99651 * 197.75988 * 13 11 10 16 16 H 1.48503 * 109.47132 * 94.69260 * 15 13 11 17 17 H 1.48503 * 109.46960 * 214.69143 * 15 13 11 18 18 H 1.48498 * 109.47236 * 334.68972 * 15 13 11 19 19 C 1.39056 * 120.03005 * 179.72062 * 6 4 3 20 20 C 1.52974 * 108.93706 * 241.31693 * 2 1 3 21 21 C 1.54790 * 108.82930 * 209.43104 * 20 2 1 22 22 S 1.83843 * 101.16213 * 41.86167 * 21 20 2 23 23 O 1.42090 * 109.61321 * 211.07711 * 22 21 20 24 24 O 1.42100 * 109.61213 * 77.12478 * 22 21 20 25 25 C 1.53626 * 108.93435 * 118.68312 * 2 1 3 26 26 H 1.08999 * 109.46942 * 59.30075 * 1 2 3 27 27 H 1.09005 * 109.47374 * 179.29779 * 1 2 3 28 28 H 1.08999 * 109.47209 * 299.29666 * 1 2 3 29 29 H 1.08004 * 119.82032 * 359.97276 * 7 6 4 30 30 H 1.08000 * 119.79367 * 179.97438 * 8 7 6 31 31 H 1.07999 * 119.97473 * 179.97438 * 9 8 7 32 32 H 0.97002 * 119.99385 * 179.97438 * 14 13 11 33 33 H 1.07995 * 120.20597 * 359.97438 * 19 6 4 34 34 H 1.09002 * 109.64726 * 329.30862 * 20 2 1 35 35 H 1.08994 * 109.65109 * 89.62327 * 20 2 1 36 36 H 1.08994 * 111.06459 * 283.90635 * 21 20 2 37 37 H 1.08999 * 111.14483 * 159.85800 * 21 20 2 38 38 H 1.09000 * 110.27029 * 241.94145 * 25 2 1 39 39 H 1.09003 * 110.26665 * 3.90569 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0003 1.3738 0.0000 4 6 1.6186 2.1509 -1.0320 5 8 0.9125 1.6933 -1.9081 6 6 2.0588 3.5598 -1.0982 7 6 2.8719 4.0879 -0.0887 8 6 3.2883 5.4057 -0.1443 9 6 2.9083 6.2136 -1.1934 10 6 2.0917 5.7002 -2.2185 11 6 1.6995 6.5275 -3.2967 12 1 2.2986 7.3852 -3.5648 13 6 0.5355 6.2345 -4.0160 14 7 -0.3650 5.4345 -3.5054 15 14 0.2676 6.9856 -5.7052 16 1 0.7341 6.0372 -6.7483 17 1 -1.1782 7.2634 -5.8997 18 1 1.0337 8.2534 -5.8104 19 6 1.6699 4.3609 -2.1662 20 6 2.0264 -0.6945 -1.2694 21 6 3.3954 -1.3541 -0.9751 22 16 3.0953 -2.0684 0.6920 23 8 4.3080 -2.0771 1.4326 24 8 2.3232 -3.2551 0.5705 25 6 2.0284 -0.6975 1.2748 26 1 -0.3633 0.5247 -0.8836 27 1 -0.3634 -1.0276 -0.0126 28 1 -0.3633 0.5029 0.8962 29 1 3.1759 3.4630 0.7381 30 1 3.9152 5.8039 0.6398 31 1 3.2372 7.2417 -1.2294 32 1 -1.1720 5.2317 -4.0039 33 1 1.0463 3.9567 -2.9498 34 1 1.3103 -1.4580 -1.5734 35 1 2.1390 0.0385 -2.0681 36 1 4.1907 -0.6094 -0.9451 37 1 3.6199 -2.1350 -1.7017 38 1 2.6059 -0.0024 1.8844 39 1 1.1860 -1.0889 1.8451 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821580128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:20 Heat of formation + Delta-G solvation = -152.657587 kcal Electronic energy + Delta-G solvation = -25414.601762 eV Core-core repulsion = 21606.662802 eV Total energy + Delta-G solvation = -3807.938960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00668 -39.46161 -38.29926 -38.00018 -37.15464 -35.95815 -35.52351 -32.25924 -31.76500 -31.34254 -28.95302 -27.31597 -25.61146 -25.00806 -22.90412 -22.33838 -20.71838 -19.98687 -19.40524 -18.45098 -17.88548 -17.63135 -17.21561 -16.97318 -16.76317 -16.58115 -16.44588 -15.61499 -15.25654 -15.13762 -14.69152 -14.61859 -14.44569 -14.26412 -13.82496 -13.57500 -13.35339 -13.24113 -13.19328 -13.10629 -12.93243 -12.82057 -12.68047 -12.54985 -12.35530 -12.19195 -12.18331 -11.89578 -11.54224 -11.50391 -11.38506 -11.10193 -10.90142 -9.60656 -9.44234 -8.69422 -6.40164 -1.02050 0.14205 0.96742 1.30952 1.38161 1.45884 1.51891 1.69944 1.80824 2.18753 2.48001 2.71620 2.92625 3.19407 3.25177 3.49262 3.63480 3.73417 3.83828 3.92211 4.31775 4.40372 4.47480 4.54320 4.61288 4.63629 4.72860 4.77370 4.88521 4.98867 5.05876 5.13605 5.20151 5.28169 5.32747 5.46143 5.81676 5.90172 6.01449 6.23635 6.53108 6.83289 6.87264 6.89508 8.27852 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022150 B = 0.003261 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.783209 B = 8584.081688 C = 9231.309694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.124 3.876 3 O -0.340 6.340 4 C 0.519 3.481 5 O -0.526 6.526 6 C -0.131 4.131 7 C -0.184 4.184 8 C -0.100 4.100 9 C -0.207 4.207 10 C 0.066 3.934 11 C -0.495 4.495 12 H 0.085 0.915 13 C 0.033 3.967 14 N -0.824 5.824 15 Si 0.981 3.019 16 H -0.266 1.266 17 H -0.270 1.270 18 H -0.253 1.253 19 C -0.121 4.121 20 C -0.159 4.159 21 C -0.566 4.566 22 S 2.413 3.587 23 O -0.965 6.965 24 O -0.954 6.954 25 C -0.572 4.572 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.288 0.712 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -11.175 6.095 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.086 3.914 3 O -0.257 6.257 4 C 0.367 3.633 5 O -0.417 6.417 6 C -0.132 4.132 7 C -0.204 4.204 8 C -0.118 4.118 9 C -0.226 4.226 10 C 0.064 3.936 11 C -0.524 4.524 12 H 0.103 0.897 13 C -0.182 4.182 14 N -0.449 5.449 15 Si 0.802 3.198 16 H -0.191 1.191 17 H -0.194 1.194 18 H -0.176 1.176 19 C -0.141 4.141 20 C -0.197 4.197 21 C -0.697 4.697 22 S 2.598 3.402 23 O -0.962 6.962 24 O -0.951 6.951 25 C -0.700 4.700 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.221 -12.315 6.297 14.202 hybrid contribution -0.833 1.197 -1.276 1.938 sum 2.387 -11.118 5.021 12.431 Atomic orbital electron populations 1.22715 0.92294 1.05570 1.04270 1.22320 0.96620 0.79132 0.93295 1.86669 1.69617 1.23686 1.45743 1.21407 0.76416 0.86821 0.78689 1.90700 1.36241 1.74896 1.39860 1.19144 1.04674 0.89752 0.99633 1.20991 1.02876 0.96698 0.99786 1.20955 0.99448 0.93467 0.97909 1.21493 1.05829 0.99517 0.95810 1.17897 0.91487 0.91495 0.92754 1.19871 1.07776 1.11602 1.13177 0.89719 1.26787 0.94291 0.94358 1.02740 1.69857 1.07163 1.29745 1.38170 0.85193 0.78410 0.79532 0.76653 1.19065 1.19440 1.17600 1.21474 1.01513 0.93527 0.97569 1.22753 0.95684 1.02824 0.98468 1.30521 1.04277 1.13106 1.21802 1.08407 0.75637 0.76941 0.79224 1.93583 1.44424 1.87713 1.70449 1.93600 1.71634 1.43598 1.86288 1.30633 1.17695 1.17099 1.04574 0.91518 0.87578 0.90575 0.84767 0.84405 0.87031 0.90135 0.87331 0.86062 0.88775 0.83527 0.81763 0.81228 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.49 7.82 71.98 0.56 -3.93 16 2 C 0.12 2.89 1.01 -10.59 -0.01 2.88 16 3 O -0.34 -10.53 8.96 -56.14 -0.50 -11.04 16 4 C 0.52 20.73 6.91 70.34 0.49 21.22 16 5 O -0.53 -22.64 12.00 19.93 0.24 -22.40 16 6 C -0.13 -5.89 5.87 -20.14 -0.12 -6.01 16 7 C -0.18 -7.25 9.62 22.71 0.22 -7.03 16 8 C -0.10 -3.87 10.01 22.18 0.22 -3.65 16 9 C -0.21 -9.26 9.78 22.77 0.22 -9.04 16 10 C 0.07 3.40 5.57 -21.32 -0.12 3.28 16 11 C -0.50 -25.65 9.05 23.47 0.21 -25.44 16 12 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 13 C 0.03 1.66 5.14 85.25 0.44 2.10 16 14 N -0.82 -43.23 10.95 21.82 0.24 -42.99 16 15 Si 0.98 37.59 29.59 68.60 2.03 39.62 16 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 18 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 19 C -0.12 -6.29 8.24 23.02 0.19 -6.10 16 20 C -0.16 -3.49 5.00 31.20 0.16 -3.33 16 21 C -0.57 -9.15 7.45 72.59 0.54 -8.61 16 22 S 2.41 41.71 6.05 -56.49 -0.34 41.37 16 23 O -0.96 -23.09 18.16 -127.52 -2.32 -25.40 16 24 O -0.95 -21.31 18.16 -127.52 -2.32 -23.62 16 25 C -0.57 -8.93 6.72 72.19 0.49 -8.44 16 26 H 0.07 2.04 5.76 -2.39 -0.01 2.03 16 27 H 0.11 1.79 8.11 -2.38 -0.02 1.77 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.13 4.41 7.59 -2.91 -0.02 4.39 16 30 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 33 H 0.11 6.16 5.74 -2.91 -0.02 6.15 16 34 H 0.12 2.17 7.81 -2.39 -0.02 2.15 16 35 H 0.09 2.68 5.72 -2.39 -0.01 2.66 16 36 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.17 2.32 7.93 -2.39 -0.02 2.30 16 39 H 0.18 1.79 7.63 -2.39 -0.02 1.77 16 Total: -1.00 -70.30 336.42 1.60 -68.70 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 1.08 Total: 27.87 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 3.49 Total: -52.10 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.24 Total: -42.99 kcal Atomic # 8 Polarization: -77.57 SS G_CDS: -4.89 Total: -82.46 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 16 Polarization: 41.71 SS G_CDS: -0.34 Total: 41.37 kcal Total: -70.30 1.60 -68.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821580128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.958 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds