Wall clock time and date at job start Tue Mar 31 2020 13:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 108.89907 * 2 1 4 4 C 1.34696 * 117.00313 * 298.68283 * 3 2 1 5 5 O 1.21470 * 119.99771 * 359.72499 * 4 3 2 6 6 C 1.47769 * 120.00178 * 179.97438 * 4 3 2 7 7 C 1.39964 * 120.03186 * 359.73040 * 6 4 3 8 8 C 1.38316 * 120.35439 * 179.71389 * 7 6 4 9 9 C 1.37756 * 120.41663 * 0.55788 * 8 7 6 10 10 C 1.40751 * 120.05349 * 359.72078 * 9 8 7 11 11 C 1.41440 * 120.17857 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99887 * 150.17435 * 11 10 9 13 13 C 1.39935 * 120.00187 * 330.18192 * 11 10 9 14 14 N 1.30818 * 120.00295 * 161.72224 * 13 11 10 15 15 Si 1.86804 * 119.99708 * 341.72619 * 13 11 10 16 16 H 1.48501 * 109.47086 * 95.41109 * 15 13 11 17 17 H 1.48496 * 109.46828 * 215.40926 * 15 13 11 18 18 H 1.48500 * 109.47055 * 335.41413 * 15 13 11 19 19 C 1.39058 * 120.03016 * 180.02562 * 6 4 3 20 20 C 1.52969 * 108.93161 * 118.68416 * 2 1 3 21 21 C 1.55097 * 108.66628 * 150.52757 * 20 2 1 22 22 S 1.83842 * 101.19257 * 318.12994 * 21 20 2 23 23 O 1.42096 * 109.61861 * 148.94490 * 22 21 20 24 24 O 1.42096 * 109.61395 * 282.72210 * 22 21 20 25 25 C 1.53623 * 108.82519 * 241.38042 * 2 1 3 26 26 H 1.09006 * 109.47060 * 59.29555 * 1 2 3 27 27 H 1.08996 * 109.47499 * 179.29445 * 1 2 3 28 28 H 1.09003 * 109.46740 * 299.30362 * 1 2 3 29 29 H 1.07998 * 119.82128 * 359.97241 * 7 6 4 30 30 H 1.08003 * 119.78691 * 180.28038 * 8 7 6 31 31 H 1.07999 * 119.97608 * 179.74051 * 9 8 7 32 32 H 0.96998 * 120.00253 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.20462 * 359.97438 * 19 6 4 34 34 H 1.08997 * 109.65658 * 270.37138 * 20 2 1 35 35 H 1.08994 * 109.65415 * 30.69186 * 20 2 1 36 36 H 1.09005 * 111.07670 * 76.10456 * 21 20 2 37 37 H 1.09001 * 111.08119 * 200.14820 * 21 20 2 38 38 H 1.08996 * 110.26736 * 355.94031 * 25 2 1 39 39 H 1.09006 * 110.26984 * 118.00233 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0003 1.3738 0.0000 4 6 1.6534 2.1389 -1.0529 5 8 0.9808 1.6700 -1.9490 6 6 2.0958 3.5472 -1.1204 7 6 2.8706 4.0884 -0.0880 8 6 3.2933 5.4041 -0.1472 9 6 2.9474 6.2003 -1.2168 10 6 2.1639 5.6756 -2.2618 11 6 1.8077 6.4906 -3.3615 12 1 1.6543 6.0477 -4.3346 13 6 1.6542 7.8708 -3.1889 14 7 1.6814 8.6668 -4.2266 15 14 1.4103 8.5764 -1.4766 16 1 2.7190 9.0209 -0.9334 17 1 0.4840 9.7349 -1.5459 18 1 0.8344 7.5343 -0.5891 19 6 1.7376 4.3379 -2.2068 20 6 2.0263 -0.6945 1.2694 21 6 3.3974 -1.3549 0.9702 22 16 3.0938 -2.0680 -0.6969 23 8 4.3049 -2.0761 -1.4401 24 8 2.3255 -3.2570 -0.5744 25 6 2.0257 -0.6965 -1.2764 26 1 -0.3633 0.5248 -0.8837 27 1 -0.3634 -1.0275 -0.0127 28 1 -0.3633 0.5030 0.8962 29 1 3.1433 3.4741 0.7574 30 1 3.8946 5.8109 0.6524 31 1 3.2778 7.2278 -1.2537 32 1 1.5746 9.6235 -4.1070 33 1 1.1363 3.9260 -3.0038 34 1 2.1389 0.0385 2.0682 35 1 1.3103 -1.4580 1.5733 36 1 4.1927 -0.6101 0.9390 37 1 3.6228 -2.1365 1.6958 38 1 1.1822 -1.0888 -1.8443 39 1 2.6020 -0.0010 -1.8866 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821580129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:24 Heat of formation + Delta-G solvation = -132.547075 kcal Electronic energy + Delta-G solvation = -25278.324491 eV Core-core repulsion = 21471.257588 eV Total energy + Delta-G solvation = -3807.066903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.78450 -38.15861 -37.35930 -36.90371 -36.24814 -34.87375 -33.78012 -31.20930 -30.66068 -30.14020 -28.23044 -25.55466 -24.85268 -23.78985 -21.35272 -20.76597 -19.85437 -19.17603 -18.01206 -17.47700 -16.83669 -16.28898 -16.21563 -15.98869 -15.65333 -15.45898 -14.78487 -14.55045 -14.21760 -14.12289 -13.78564 -13.52036 -12.99772 -12.88226 -12.84613 -12.44572 -12.33764 -12.27639 -12.16497 -12.07117 -11.99124 -11.74656 -11.68682 -11.18942 -11.14503 -10.91440 -10.67903 -10.63759 -10.44329 -10.12474 -9.89787 -9.73463 -9.33177 -8.07521 -7.89697 -7.09799 -4.65977 -0.24493 1.54188 2.17396 2.40242 2.71481 2.97267 3.08650 3.11586 3.21289 3.29505 3.64673 3.83968 3.97433 4.09147 4.21749 4.33786 4.53560 4.56389 4.86870 5.03525 5.16997 5.20490 5.35838 5.37745 5.38623 5.54600 5.72740 5.80714 6.02282 6.06408 6.21956 6.50046 6.53280 6.56210 6.84029 7.07119 7.27178 7.37250 7.61502 7.77363 8.13369 8.17101 8.39258 8.59867 9.92210 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.003042 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.638616 B = 9202.434631 C = 9337.900079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.134 3.866 3 O -0.342 6.342 4 C 0.512 3.488 5 O -0.508 6.508 6 C -0.099 4.099 7 C -0.195 4.195 8 C -0.088 4.088 9 C -0.212 4.212 10 C 0.079 3.921 11 C -0.442 4.442 12 H 0.095 0.905 13 C 0.083 3.917 14 N -0.800 5.800 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.244 1.244 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.578 4.578 22 S 2.379 3.621 23 O -0.934 6.934 24 O -0.932 6.932 25 C -0.601 4.601 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.288 0.712 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.293 -14.129 12.053 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.096 3.904 3 O -0.260 6.260 4 C 0.360 3.640 5 O -0.397 6.397 6 C -0.100 4.100 7 C -0.214 4.214 8 C -0.106 4.106 9 C -0.231 4.231 10 C 0.076 3.924 11 C -0.470 4.470 12 H 0.112 0.888 13 C -0.136 4.136 14 N -0.424 5.424 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.167 1.167 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.708 4.708 22 S 2.562 3.438 23 O -0.931 6.931 24 O -0.930 6.930 25 C -0.730 4.730 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.372 -14.917 11.146 18.625 hybrid contribution -0.395 1.257 0.839 1.562 sum -0.024 -13.660 11.984 18.172 Atomic orbital electron populations 1.22645 0.92300 1.04111 1.05294 1.22013 0.96284 0.80587 0.91492 1.86724 1.71003 1.22420 1.45850 1.21770 0.76429 0.87232 0.78616 1.90736 1.36595 1.74049 1.38336 1.18779 1.04180 0.88190 0.98891 1.20596 1.05449 0.96044 0.99322 1.20589 0.98984 0.93797 0.97258 1.21278 1.04216 0.99694 0.97937 1.17638 0.90521 0.91863 0.92370 1.19503 1.39855 0.91155 0.96522 0.88755 1.26166 0.91314 0.96838 0.99324 1.69678 1.33882 1.05957 1.32855 0.86330 0.78919 0.78822 0.82387 1.19406 1.21477 1.16675 1.21282 1.02125 0.94515 0.97354 1.22136 0.93934 1.01320 0.97784 1.30589 1.05238 1.12629 1.22357 1.09455 0.76933 0.77769 0.79657 1.93627 1.43257 1.87224 1.68997 1.93626 1.71465 1.41920 1.85942 1.31026 1.16760 1.18511 1.06690 0.88841 0.90434 0.90958 0.87260 0.87899 0.87636 0.90173 0.86445 0.86598 0.87335 0.83829 0.84113 0.83128 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 7.84 37.16 0.29 -1.65 16 2 C 0.13 1.46 1.01 -90.31 -0.09 1.37 16 3 O -0.34 -4.87 9.00 -40.48 -0.36 -5.24 16 4 C 0.51 9.12 6.76 34.63 0.23 9.36 16 5 O -0.51 -9.52 12.54 -19.24 -0.24 -9.76 16 6 C -0.10 -2.01 5.87 -105.05 -0.62 -2.62 16 7 C -0.19 -3.68 9.62 -38.91 -0.37 -4.05 16 8 C -0.09 -1.72 10.01 -39.73 -0.40 -2.12 16 9 C -0.21 -4.72 7.17 -38.81 -0.28 -5.00 16 10 C 0.08 1.90 5.10 -106.87 -0.55 1.35 16 11 C -0.44 -11.41 9.57 -37.73 -0.36 -11.77 16 12 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 13 C 0.08 2.08 5.40 -17.35 -0.09 1.99 16 14 N -0.80 -20.43 13.93 55.55 0.77 -19.66 16 15 Si 0.91 19.51 24.52 -169.99 -4.17 15.34 16 16 H -0.27 -5.52 6.71 56.52 0.38 -5.14 16 17 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.24 -5.33 6.86 56.52 0.39 -4.94 16 19 C -0.13 -3.01 9.34 -38.42 -0.36 -3.36 16 20 C -0.11 -0.82 5.52 -25.64 -0.14 -0.96 16 21 C -0.58 -3.85 7.46 38.27 0.29 -3.56 16 22 S 2.38 23.31 6.05 -107.50 -0.65 22.66 16 23 O -0.93 -12.79 18.16 -57.69 -1.05 -13.84 16 24 O -0.93 -11.23 18.16 -57.69 -1.05 -12.28 16 25 C -0.60 -6.53 5.41 37.48 0.20 -6.33 16 26 H 0.09 1.22 5.93 -51.93 -0.31 0.92 16 27 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.11 1.77 7.59 -52.49 -0.40 1.37 16 30 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.11 2.33 4.72 -52.49 -0.25 2.08 16 32 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 33 H 0.12 2.64 7.64 -52.49 -0.40 2.24 16 34 H 0.12 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.11 0.54 7.83 -51.93 -0.41 0.13 16 36 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.15 1.47 7.63 -51.93 -0.40 1.08 16 39 H 0.15 1.86 6.74 -51.93 -0.35 1.51 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -31.75 332.19 -8.62 -40.36 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.63 Total: 4.79 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -2.24 Total: -27.37 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.77 Total: -19.66 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -2.70 Total: -41.12 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.17 Total: 15.34 kcal Atomic # 16 Polarization: 23.31 SS G_CDS: -0.65 Total: 22.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.75 -8.62 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821580129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.186 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds