Wall clock time and date at job start Tue Mar 31 2020 13:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 108.89907 * 2 1 4 4 C 1.34696 * 117.00313 * 298.68283 * 3 2 1 5 5 O 1.21470 * 119.99771 * 359.72499 * 4 3 2 6 6 C 1.47769 * 120.00178 * 179.97438 * 4 3 2 7 7 C 1.39964 * 120.03186 * 359.73040 * 6 4 3 8 8 C 1.38316 * 120.35439 * 179.71389 * 7 6 4 9 9 C 1.37756 * 120.41663 * 0.55788 * 8 7 6 10 10 C 1.40751 * 120.05349 * 359.72078 * 9 8 7 11 11 C 1.41440 * 120.17857 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99887 * 150.17435 * 11 10 9 13 13 C 1.39935 * 120.00187 * 330.18192 * 11 10 9 14 14 N 1.30818 * 120.00295 * 161.72224 * 13 11 10 15 15 Si 1.86804 * 119.99708 * 341.72619 * 13 11 10 16 16 H 1.48501 * 109.47086 * 95.41109 * 15 13 11 17 17 H 1.48496 * 109.46828 * 215.40926 * 15 13 11 18 18 H 1.48500 * 109.47055 * 335.41413 * 15 13 11 19 19 C 1.39058 * 120.03016 * 180.02562 * 6 4 3 20 20 C 1.52969 * 108.93161 * 118.68416 * 2 1 3 21 21 C 1.55097 * 108.66628 * 150.52757 * 20 2 1 22 22 S 1.83842 * 101.19257 * 318.12994 * 21 20 2 23 23 O 1.42096 * 109.61861 * 148.94490 * 22 21 20 24 24 O 1.42096 * 109.61395 * 282.72210 * 22 21 20 25 25 C 1.53623 * 108.82519 * 241.38042 * 2 1 3 26 26 H 1.09006 * 109.47060 * 59.29555 * 1 2 3 27 27 H 1.08996 * 109.47499 * 179.29445 * 1 2 3 28 28 H 1.09003 * 109.46740 * 299.30362 * 1 2 3 29 29 H 1.07998 * 119.82128 * 359.97241 * 7 6 4 30 30 H 1.08003 * 119.78691 * 180.28038 * 8 7 6 31 31 H 1.07999 * 119.97608 * 179.74051 * 9 8 7 32 32 H 0.96998 * 120.00253 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.20462 * 359.97438 * 19 6 4 34 34 H 1.08997 * 109.65658 * 270.37138 * 20 2 1 35 35 H 1.08994 * 109.65415 * 30.69186 * 20 2 1 36 36 H 1.09005 * 111.07670 * 76.10456 * 21 20 2 37 37 H 1.09001 * 111.08119 * 200.14820 * 21 20 2 38 38 H 1.08996 * 110.26736 * 355.94031 * 25 2 1 39 39 H 1.09006 * 110.26984 * 118.00233 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0003 1.3738 0.0000 4 6 1.6534 2.1389 -1.0529 5 8 0.9808 1.6700 -1.9490 6 6 2.0958 3.5472 -1.1204 7 6 2.8706 4.0884 -0.0880 8 6 3.2933 5.4041 -0.1472 9 6 2.9474 6.2003 -1.2168 10 6 2.1639 5.6756 -2.2618 11 6 1.8077 6.4906 -3.3615 12 1 1.6543 6.0477 -4.3346 13 6 1.6542 7.8708 -3.1889 14 7 1.6814 8.6668 -4.2266 15 14 1.4103 8.5764 -1.4766 16 1 2.7190 9.0209 -0.9334 17 1 0.4840 9.7349 -1.5459 18 1 0.8344 7.5343 -0.5891 19 6 1.7376 4.3379 -2.2068 20 6 2.0263 -0.6945 1.2694 21 6 3.3974 -1.3549 0.9702 22 16 3.0938 -2.0680 -0.6969 23 8 4.3049 -2.0761 -1.4401 24 8 2.3255 -3.2570 -0.5744 25 6 2.0257 -0.6965 -1.2764 26 1 -0.3633 0.5248 -0.8837 27 1 -0.3634 -1.0275 -0.0127 28 1 -0.3633 0.5030 0.8962 29 1 3.1433 3.4741 0.7574 30 1 3.8946 5.8109 0.6524 31 1 3.2778 7.2278 -1.2537 32 1 1.5746 9.6235 -4.1070 33 1 1.1363 3.9260 -3.0038 34 1 2.1389 0.0385 2.0682 35 1 1.3103 -1.4580 1.5733 36 1 4.1927 -0.6101 0.9390 37 1 3.6228 -2.1365 1.6958 38 1 1.1822 -1.0888 -1.8443 39 1 2.6020 -0.0010 -1.8866 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821580129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:23 Heat of formation + Delta-G solvation = -154.635192 kcal Electronic energy + Delta-G solvation = -25279.282304 eV Core-core repulsion = 21471.257588 eV Total energy + Delta-G solvation = -3808.024715 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99460 -39.67578 -38.38826 -38.05665 -37.14635 -35.93605 -35.53382 -32.63590 -31.97318 -31.49505 -29.05374 -27.29267 -25.95322 -24.92643 -22.72631 -22.33194 -21.02219 -20.07070 -19.51292 -18.47222 -18.10652 -17.64362 -17.25346 -17.08405 -16.81762 -16.57567 -16.48123 -15.66884 -15.43166 -15.20818 -14.93959 -14.61576 -14.51644 -14.34981 -13.91997 -13.62545 -13.44784 -13.34688 -13.21145 -13.07556 -12.96483 -12.91594 -12.75360 -12.58893 -12.55113 -12.32696 -12.09563 -11.78358 -11.62663 -11.54055 -11.33107 -11.18241 -10.97849 -9.73084 -9.64739 -8.93212 -6.57962 -1.00836 -0.04667 0.70943 1.25362 1.40925 1.43111 1.46995 1.55029 1.66044 2.10077 2.50394 2.58637 2.87834 3.21115 3.36937 3.38748 3.50723 3.63996 3.82599 3.98915 4.22835 4.31683 4.42431 4.49989 4.53330 4.61174 4.69062 4.80017 4.84176 4.85364 4.88727 4.99969 5.11438 5.21324 5.32795 5.36487 5.61444 5.68525 5.80677 6.07518 6.26625 6.59893 6.70748 6.77633 8.15685 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.003042 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.638616 B = 9202.434631 C = 9337.900079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.124 3.876 3 O -0.332 6.332 4 C 0.516 3.484 5 O -0.525 6.525 6 C -0.108 4.108 7 C -0.164 4.164 8 C -0.087 4.087 9 C -0.216 4.216 10 C 0.064 3.936 11 C -0.488 4.488 12 H 0.051 0.949 13 C 0.046 3.954 14 N -0.848 5.848 15 Si 0.965 3.035 16 H -0.246 1.246 17 H -0.278 1.278 18 H -0.249 1.249 19 C -0.160 4.160 20 C -0.113 4.113 21 C -0.546 4.546 22 S 2.388 3.612 23 O -0.981 6.981 24 O -0.957 6.957 25 C -0.612 4.612 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.296 0.704 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.151 0.849 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -15.489 17.569 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.087 3.913 3 O -0.249 6.249 4 C 0.363 3.637 5 O -0.416 6.416 6 C -0.109 4.109 7 C -0.183 4.183 8 C -0.105 4.105 9 C -0.235 4.235 10 C 0.061 3.939 11 C -0.517 4.517 12 H 0.070 0.930 13 C -0.169 4.169 14 N -0.474 5.474 15 Si 0.787 3.213 16 H -0.171 1.171 17 H -0.204 1.204 18 H -0.173 1.173 19 C -0.179 4.179 20 C -0.150 4.150 21 C -0.679 4.679 22 S 2.575 3.425 23 O -0.978 6.978 24 O -0.954 6.954 25 C -0.740 4.740 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.174 0.826 37 H 0.197 0.803 38 H 0.169 0.831 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.425 -16.306 16.627 23.331 hybrid contribution -0.685 1.391 -0.721 1.710 sum 0.740 -14.914 15.906 21.817 Atomic orbital electron populations 1.22675 0.92065 1.05558 1.04329 1.22559 0.96834 0.78712 0.93220 1.86663 1.70531 1.24057 1.43673 1.21340 0.76200 0.86824 0.79323 1.90747 1.37205 1.74351 1.39277 1.19055 1.03909 0.89628 0.98284 1.21170 1.01978 0.96100 0.99042 1.21093 0.98491 0.93630 0.97249 1.21484 1.03561 1.00385 0.98051 1.17720 0.91191 0.92252 0.92714 1.19445 1.43940 0.92499 0.95859 0.93027 1.26898 0.90574 0.96524 1.02903 1.69716 1.36340 1.06601 1.34733 0.85501 0.79875 0.78097 0.77843 1.17073 1.20402 1.17272 1.21220 1.03403 0.94891 0.98424 1.22339 0.94608 1.02304 0.95798 1.30485 1.05603 1.13460 1.18384 1.09099 0.75388 0.76979 0.81058 1.93563 1.44779 1.87710 1.71728 1.93586 1.71800 1.43215 1.86787 1.31066 1.17079 1.18830 1.07050 0.92199 0.87820 0.89539 0.82983 0.83305 0.87357 0.89382 0.88445 0.84371 0.84202 0.82559 0.80297 0.83116 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 7.84 71.98 0.56 -2.91 16 2 C 0.12 2.31 1.01 -10.59 -0.01 2.30 16 3 O -0.33 -8.36 9.00 -56.06 -0.50 -8.86 16 4 C 0.52 17.85 6.76 70.34 0.48 18.32 16 5 O -0.53 -20.19 12.54 19.94 0.25 -19.94 16 6 C -0.11 -4.22 5.87 -20.14 -0.12 -4.34 16 7 C -0.16 -5.48 9.62 22.71 0.22 -5.26 16 8 C -0.09 -3.02 10.01 22.17 0.22 -2.80 16 9 C -0.22 -9.28 7.17 22.77 0.16 -9.12 16 10 C 0.06 3.16 5.10 -21.32 -0.11 3.05 16 11 C -0.49 -27.19 9.57 23.47 0.22 -26.96 16 12 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 13 C 0.05 2.39 5.40 85.25 0.46 2.85 16 14 N -0.85 -45.85 13.93 21.82 0.30 -45.55 16 15 Si 0.96 40.18 24.52 68.60 1.68 41.86 16 16 H -0.25 -9.30 6.71 99.48 0.67 -8.63 16 17 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.25 -10.46 6.86 99.48 0.68 -9.78 16 19 C -0.16 -7.50 9.34 23.02 0.21 -7.29 16 20 C -0.11 -0.98 5.52 31.30 0.17 -0.80 16 21 C -0.55 -4.33 7.46 72.70 0.54 -3.78 16 22 S 2.39 42.47 6.05 -56.49 -0.34 42.13 16 23 O -0.98 -26.46 18.16 -127.50 -2.32 -28.78 16 24 O -0.96 -21.34 18.16 -127.50 -2.32 -23.66 16 25 C -0.61 -12.83 5.41 72.19 0.39 -12.43 16 26 H 0.06 1.54 5.93 -2.38 -0.01 1.53 16 27 H 0.10 1.33 8.13 -2.39 -0.02 1.31 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.15 3.86 7.59 -2.91 -0.02 3.84 16 30 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.11 4.58 4.72 -2.91 -0.01 4.57 16 32 H 0.30 14.23 8.30 -92.71 -0.77 13.46 16 33 H 0.10 4.82 7.64 -2.91 -0.02 4.79 16 34 H 0.14 0.79 8.05 -2.39 -0.02 0.77 16 35 H 0.14 0.48 7.83 -2.39 -0.02 0.46 16 36 H 0.16 1.04 8.14 -2.38 -0.02 1.03 16 37 H 0.18 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.15 3.01 7.63 -2.39 -0.02 3.00 16 39 H 0.13 3.25 6.74 -2.38 -0.02 3.23 16 Total: -1.00 -75.28 332.19 1.19 -74.10 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.02 Total: 17.87 kcal Atomic # 6 Polarization: -52.58 SS G_CDS: 3.41 Total: -49.17 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.30 Total: -45.55 kcal Atomic # 8 Polarization: -76.35 SS G_CDS: -4.89 Total: -81.23 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.68 Total: 41.86 kcal Atomic # 16 Polarization: 42.47 SS G_CDS: -0.34 Total: 42.13 kcal Total: -75.28 1.19 -74.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821580129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.539 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds