Wall clock time and date at job start Tue Mar 31 2020 13:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48499 * 109.46849 * 269.99761 * 3 2 1 5 5 H 1.48501 * 109.47317 * 29.99683 * 3 2 1 6 6 H 1.48506 * 109.47150 * 149.99841 * 3 2 1 7 7 C 1.37875 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99928 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00123 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47019 * 185.38300 * 9 7 2 11 11 C 1.46900 * 111.00039 * 61.02731 * 10 9 7 12 12 C 1.50696 * 109.47381 * 71.77392 * 11 10 9 13 13 C 1.34505 * 125.79188 * 89.71929 * 12 11 10 14 14 C 1.41383 * 106.84060 * 179.89001 * 13 12 11 15 15 C 1.34511 * 106.84178 * 0.36963 * 14 13 12 16 16 O 1.34303 * 108.42169 * 359.77113 * 15 14 13 17 17 C 1.46894 * 111.00248 * 297.06533 * 10 9 7 18 18 C 1.50698 * 109.47439 * 293.95444 * 17 10 9 19 19 C 1.38676 * 120.79570 * 259.71679 * 18 17 10 20 20 C 1.38144 * 119.21938 * 179.77565 * 19 18 17 21 21 N 1.31907 * 120.83847 * 0.51344 * 20 19 18 22 22 C 1.31926 * 121.72835 * 359.73736 * 21 20 19 23 23 Cl 1.73597 * 119.65013 * 179.97438 * 22 21 20 24 24 C 1.38626 * 120.69707 * 0.02562 * 22 21 20 25 25 F 1.35097 * 120.45149 * 180.02562 * 24 22 21 26 26 H 0.96995 * 120.00363 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46910 * 65.38046 * 9 7 2 28 28 H 1.09001 * 109.47213 * 305.38724 * 9 7 2 29 29 H 1.09005 * 109.46961 * 191.77744 * 11 10 9 30 30 H 1.09000 * 109.46646 * 311.76717 * 11 10 9 31 31 H 1.08001 * 126.58142 * 0.02562 * 13 12 11 32 32 H 1.08000 * 126.58303 * 180.16109 * 14 13 12 33 33 H 1.08002 * 125.79411 * 179.75433 * 15 14 13 34 34 H 1.09004 * 109.47187 * 53.95623 * 17 10 9 35 35 H 1.09001 * 109.47507 * 173.95236 * 17 10 9 36 36 H 1.07998 * 120.38892 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.58055 * 180.22890 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5729 -0.1292 11 6 3.5498 -3.1758 -1.3905 12 6 4.2973 -2.5525 -2.5410 13 6 5.4637 -2.9882 -3.0497 14 6 5.7989 -2.1163 -4.1110 15 6 4.8214 -1.1950 -4.1821 16 8 3.9145 -1.4641 -3.2288 17 6 3.5888 -3.3879 1.0212 18 6 4.2700 -2.8808 2.2661 19 6 5.3911 -3.5208 2.7728 20 6 5.9925 -3.0253 3.9135 21 7 5.5077 -1.9627 4.5265 22 6 4.4405 -1.3298 4.0782 23 17 3.8480 0.0632 4.9280 24 6 3.7866 -1.7661 2.9363 25 9 2.6944 -1.1139 2.4814 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.7652 0.9338 28 1 3.8746 -0.5994 -0.8384 29 1 3.7431 -4.2484 -1.3701 30 1 2.4810 -3.0016 -1.5144 31 1 6.0336 -3.8418 -2.7135 32 1 6.6739 -2.1762 -4.7413 33 1 4.7740 -0.3774 -4.8861 34 1 2.5080 -3.3207 1.1454 35 1 3.8709 -4.4269 0.8502 36 1 5.7917 -4.3938 2.2791 37 1 6.8682 -3.5170 4.3110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823382271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:45 Heat of formation + Delta-G solvation = 26.098182 kcal Electronic energy + Delta-G solvation = -25661.738940 eV Core-core repulsion = 21768.340152 eV Total energy + Delta-G solvation = -3893.398789 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.39977 -42.07821 -40.00931 -37.30297 -36.44120 -33.09317 -32.64989 -32.22151 -30.58100 -29.97119 -27.97695 -26.34678 -24.17560 -23.38801 -22.48493 -21.27579 -20.53641 -19.57107 -17.56237 -17.35599 -16.88975 -16.63753 -16.43000 -16.07646 -15.51539 -14.67940 -14.46504 -14.33830 -14.17430 -13.93974 -13.61101 -13.43791 -12.77878 -12.50218 -12.38829 -12.36348 -12.13804 -11.88743 -11.63603 -11.47719 -11.28223 -11.12497 -11.05930 -10.88771 -10.33404 -9.99637 -9.65364 -9.61953 -9.50572 -9.43981 -8.61510 -8.55705 -8.08139 -7.48825 -6.10422 -4.08329 0.91790 1.11412 1.90654 2.18665 2.99725 3.29896 3.37143 3.42325 3.48621 3.60356 4.25085 4.42540 4.47316 4.63925 4.84702 4.96212 5.15138 5.24080 5.25396 5.39132 5.40775 5.51016 5.70204 5.76163 5.92315 6.05235 6.11524 6.17991 6.29508 6.36310 6.54709 6.62370 6.72462 6.93098 7.01805 7.39664 7.65840 7.67006 7.72393 7.80289 8.37550 8.86086 9.53865 11.02306 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.005836 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.365515 B = 4796.253471 C = 6279.469129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.087 3.913 3 Si 0.865 3.135 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.144 3.856 10 N -0.525 5.525 11 C 0.129 3.871 12 C 0.028 3.972 13 C -0.216 4.216 14 C -0.220 4.220 15 C -0.053 4.053 16 O -0.161 6.161 17 C 0.093 3.907 18 C -0.047 4.047 19 C -0.129 4.129 20 C 0.091 3.909 21 N -0.460 5.460 22 C 0.127 3.873 23 Cl -0.022 7.022 24 C 0.091 3.909 25 F -0.071 7.071 26 H 0.263 0.737 27 H 0.032 0.968 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.194 0.806 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.165 -7.907 1.268 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.116 4.116 3 Si 0.692 3.308 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.093 0.907 9 C 0.018 3.982 10 N -0.249 5.249 11 C 0.001 3.999 12 C -0.024 4.024 13 C -0.236 4.236 14 C -0.240 4.240 15 C -0.121 4.121 16 O -0.056 6.056 17 C -0.034 4.034 18 C -0.056 4.056 19 C -0.150 4.150 20 C -0.067 4.067 21 N -0.171 5.171 22 C -0.038 4.038 23 Cl 0.006 6.994 24 C 0.068 3.932 25 F -0.049 7.049 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.211 0.789 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.166 0.834 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.540 -7.142 2.132 13.738 hybrid contribution -0.780 1.051 -0.863 1.568 sum 10.761 -6.090 1.269 12.430 Atomic orbital electron populations 1.69887 1.06226 1.26929 1.50164 1.24738 0.94433 0.98666 0.93779 0.86998 0.80783 0.84429 0.78549 1.20257 1.21168 1.18947 1.21333 0.89752 0.94511 1.52076 0.90702 1.20495 0.95345 0.84998 0.97398 1.62595 1.58691 1.04318 0.99272 1.20440 0.98760 0.95740 0.84938 1.22377 0.96193 0.87920 0.95872 1.21430 0.97787 1.04081 1.00281 1.21708 1.01634 0.98369 1.02259 1.23941 0.90663 1.02283 0.95222 1.84186 1.44297 1.39501 1.37580 1.20902 0.99327 0.96207 0.87004 1.20410 0.95444 0.93100 0.96655 1.22042 0.94713 1.01390 0.96850 1.22577 0.99387 0.91872 0.92840 1.66983 1.09814 1.08298 1.31963 1.21787 0.95134 0.94074 0.92826 1.98409 1.85848 1.37912 1.77213 1.18400 0.88111 0.93520 0.93200 1.91901 1.48048 1.78336 1.86610 0.92707 0.95069 0.95395 0.89412 0.90416 0.84036 0.84201 0.78935 0.90740 0.90115 0.83406 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 2 C 0.09 2.45 5.38 -17.82 -0.10 2.35 16 3 Si 0.87 22.02 27.37 -169.99 -4.65 17.36 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.64 6.70 56.52 0.38 -6.26 16 7 C -0.54 -14.05 5.82 -34.44 -0.20 -14.25 16 8 H 0.08 2.08 6.21 -52.49 -0.33 1.75 16 9 C 0.14 3.33 3.47 -4.98 -0.02 3.31 16 10 N -0.52 -9.87 4.65 -238.97 -1.11 -10.98 16 11 C 0.13 2.25 5.34 -4.98 -0.03 2.22 16 12 C 0.03 0.50 6.11 -35.63 -0.22 0.28 16 13 C -0.22 -3.35 10.81 -39.71 -0.43 -3.78 16 14 C -0.22 -3.19 10.91 -39.70 -0.43 -3.62 16 15 C -0.05 -0.82 12.09 29.41 0.36 -0.46 16 16 O -0.16 -3.16 10.13 5.69 0.06 -3.11 16 17 C 0.09 1.52 4.86 -4.98 -0.02 1.50 16 18 C -0.05 -0.75 5.18 -104.27 -0.54 -1.29 16 19 C -0.13 -1.59 9.78 -39.45 -0.39 -1.98 16 20 C 0.09 1.11 11.18 -17.55 -0.20 0.92 16 21 N -0.46 -7.21 10.34 -10.31 -0.11 -7.32 16 22 C 0.13 2.24 7.28 -17.37 -0.13 2.11 16 23 Cl -0.02 -0.38 28.78 -51.86 -1.49 -1.88 16 24 C 0.09 1.72 5.91 -39.24 -0.23 1.49 16 25 F -0.07 -1.61 12.06 2.25 0.03 -1.58 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.76 4.22 -51.93 -0.22 0.54 16 28 H 0.03 0.70 6.17 -51.93 -0.32 0.38 16 29 H 0.09 1.21 7.81 -51.93 -0.41 0.80 16 30 H 0.08 1.56 6.35 -51.93 -0.33 1.23 16 31 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.07 1.41 6.27 -51.93 -0.33 1.08 16 35 H 0.08 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -31.74 325.72 -7.77 -39.50 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.60 Total: 0.12 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.57 Total: -11.21 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.44 Total: -44.13 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.06 Total: -3.11 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.65 Total: 17.36 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.49 Total: -1.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.74 -7.77 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823382271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.603 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds