Wall clock time and date at job start Tue Mar 31 2020 13:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48499 * 109.46849 * 269.99761 * 3 2 1 5 5 H 1.48501 * 109.47317 * 29.99683 * 3 2 1 6 6 H 1.48506 * 109.47150 * 149.99841 * 3 2 1 7 7 C 1.37875 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99928 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00123 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47019 * 185.38300 * 9 7 2 11 11 C 1.46900 * 111.00039 * 61.02731 * 10 9 7 12 12 C 1.50696 * 109.47381 * 71.77392 * 11 10 9 13 13 C 1.34505 * 125.79188 * 89.71929 * 12 11 10 14 14 C 1.41383 * 106.84060 * 179.89001 * 13 12 11 15 15 C 1.34511 * 106.84178 * 0.36963 * 14 13 12 16 16 O 1.34303 * 108.42169 * 359.77113 * 15 14 13 17 17 C 1.46894 * 111.00248 * 297.06533 * 10 9 7 18 18 C 1.50698 * 109.47439 * 293.95444 * 17 10 9 19 19 C 1.38676 * 120.79570 * 259.71679 * 18 17 10 20 20 C 1.38144 * 119.21938 * 179.77565 * 19 18 17 21 21 N 1.31907 * 120.83847 * 0.51344 * 20 19 18 22 22 C 1.31926 * 121.72835 * 359.73736 * 21 20 19 23 23 Cl 1.73597 * 119.65013 * 179.97438 * 22 21 20 24 24 C 1.38626 * 120.69707 * 0.02562 * 22 21 20 25 25 F 1.35097 * 120.45149 * 180.02562 * 24 22 21 26 26 H 0.96995 * 120.00363 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46910 * 65.38046 * 9 7 2 28 28 H 1.09001 * 109.47213 * 305.38724 * 9 7 2 29 29 H 1.09005 * 109.46961 * 191.77744 * 11 10 9 30 30 H 1.09000 * 109.46646 * 311.76717 * 11 10 9 31 31 H 1.08001 * 126.58142 * 0.02562 * 13 12 11 32 32 H 1.08000 * 126.58303 * 180.16109 * 14 13 12 33 33 H 1.08002 * 125.79411 * 179.75433 * 15 14 13 34 34 H 1.09004 * 109.47187 * 53.95623 * 17 10 9 35 35 H 1.09001 * 109.47507 * 173.95236 * 17 10 9 36 36 H 1.07998 * 120.38892 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.58055 * 180.22890 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5729 -0.1292 11 6 3.5498 -3.1758 -1.3905 12 6 4.2973 -2.5525 -2.5410 13 6 5.4637 -2.9882 -3.0497 14 6 5.7989 -2.1163 -4.1110 15 6 4.8214 -1.1950 -4.1821 16 8 3.9145 -1.4641 -3.2288 17 6 3.5888 -3.3879 1.0212 18 6 4.2700 -2.8808 2.2661 19 6 5.3911 -3.5208 2.7728 20 6 5.9925 -3.0253 3.9135 21 7 5.5077 -1.9627 4.5265 22 6 4.4405 -1.3298 4.0782 23 17 3.8480 0.0632 4.9280 24 6 3.7866 -1.7661 2.9363 25 9 2.6944 -1.1139 2.4814 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.7652 0.9338 28 1 3.8746 -0.5994 -0.8384 29 1 3.7431 -4.2484 -1.3701 30 1 2.4810 -3.0016 -1.5144 31 1 6.0336 -3.8418 -2.7135 32 1 6.6739 -2.1762 -4.7413 33 1 4.7740 -0.3774 -4.8861 34 1 2.5080 -3.3207 1.1454 35 1 3.8709 -4.4269 0.8502 36 1 5.7917 -4.3938 2.2791 37 1 6.8682 -3.5170 4.3110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823382271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:43 Heat of formation + Delta-G solvation = 4.204383 kcal Electronic energy + Delta-G solvation = -25662.688326 eV Core-core repulsion = 21768.340152 eV Total energy + Delta-G solvation = -3894.348175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.89556 -43.32729 -41.18080 -38.78556 -37.73706 -34.70702 -34.17363 -33.64986 -31.73858 -31.33764 -29.72207 -27.63062 -25.80990 -24.56618 -23.88986 -22.48096 -21.93842 -20.99988 -19.34592 -18.66913 -18.26051 -18.03361 -17.62902 -17.51681 -16.91530 -16.46121 -15.98259 -15.60561 -15.55948 -15.34874 -14.97233 -14.76030 -14.51442 -14.09855 -13.57581 -13.53287 -13.44930 -13.25959 -13.17068 -12.90536 -12.79554 -12.73842 -12.57757 -12.43169 -12.12475 -11.87822 -11.71675 -10.82262 -10.74680 -10.72597 -10.64631 -9.84640 -9.34152 -9.06942 -8.29571 -6.26133 -0.24634 -0.07045 0.65935 0.94569 1.22930 1.26408 1.34389 1.84915 2.30299 2.32392 2.47550 2.99928 3.09890 3.29141 3.47020 3.58237 3.81099 3.94167 4.10227 4.26130 4.31514 4.49627 4.52625 4.53582 4.71513 4.79477 4.86089 4.96099 5.03889 5.05258 5.12523 5.18060 5.35773 5.46087 5.52435 5.80358 5.96298 6.20653 6.24563 6.45626 6.55310 6.72808 7.37470 8.86749 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.005836 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.365515 B = 4796.253471 C = 6279.469129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.035 3.965 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.508 4.508 8 H 0.049 0.951 9 C 0.160 3.840 10 N -0.516 5.516 11 C 0.132 3.868 12 C -0.013 4.013 13 C -0.200 4.200 14 C -0.217 4.217 15 C -0.068 4.068 16 O -0.206 6.206 17 C 0.094 3.906 18 C -0.060 4.060 19 C -0.104 4.104 20 C 0.106 3.894 21 N -0.473 5.473 22 C 0.112 3.888 23 Cl -0.036 7.036 24 C 0.051 3.949 25 F -0.108 7.108 26 H 0.261 0.739 27 H 0.025 0.975 28 H 0.009 0.991 29 H 0.132 0.868 30 H 0.038 0.962 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.221 0.779 34 H 0.038 0.962 35 H 0.132 0.868 36 H 0.199 0.801 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.288 -10.409 0.895 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.164 4.164 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.033 3.967 10 N -0.239 5.239 11 C 0.005 3.995 12 C -0.064 4.064 13 C -0.219 4.219 14 C -0.236 4.236 15 C -0.135 4.135 16 O -0.102 6.102 17 C -0.033 4.033 18 C -0.069 4.069 19 C -0.124 4.124 20 C -0.052 4.052 21 N -0.184 5.184 22 C -0.051 4.051 23 Cl -0.008 7.008 24 C 0.028 3.972 25 F -0.086 7.086 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.150 0.850 30 H 0.056 0.944 31 H 0.189 0.811 32 H 0.192 0.808 33 H 0.237 0.763 34 H 0.056 0.944 35 H 0.150 0.850 36 H 0.216 0.784 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 15.684 -9.650 1.762 18.499 hybrid contribution -1.910 1.625 -0.754 2.619 sum 13.774 -8.025 1.009 15.973 Atomic orbital electron populations 1.69999 1.07572 1.27317 1.53258 1.25364 0.94931 1.01483 0.94582 0.86274 0.79896 0.81687 0.78567 1.19814 1.21146 1.18542 1.21492 0.91511 0.92973 1.48696 0.93340 1.20127 0.92711 0.87950 0.95922 1.62575 1.57913 1.02577 1.00840 1.20523 0.96442 0.98140 0.84419 1.22599 0.97894 0.88810 0.97053 1.21817 0.96461 1.04259 0.99410 1.22137 1.02133 0.97260 1.02029 1.24702 0.90389 1.03516 0.94898 1.84146 1.46259 1.40737 1.39083 1.21023 0.97489 0.98418 0.86394 1.20606 0.96905 0.92853 0.96554 1.22568 0.92176 1.01561 0.96060 1.23540 0.99697 0.90028 0.91927 1.67076 1.09180 1.09537 1.32605 1.21753 0.96040 0.94442 0.92888 1.98391 1.86234 1.38776 1.77356 1.18839 0.88270 0.95287 0.94848 1.91788 1.50070 1.79428 1.87343 0.92965 0.95748 0.97310 0.84981 0.94418 0.81134 0.80849 0.76272 0.94364 0.84987 0.78387 0.76460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.03 2.05 5.38 84.65 0.46 2.50 16 3 Si 0.91 47.10 27.37 68.60 1.88 48.98 16 4 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.26 -13.20 6.70 99.48 0.67 -12.54 16 7 C -0.51 -27.83 5.82 25.60 0.15 -27.68 16 8 H 0.05 2.87 6.21 -2.91 -0.02 2.85 16 9 C 0.16 7.58 3.47 85.56 0.30 7.88 16 10 N -0.52 -18.85 4.65 -909.96 -4.23 -23.08 16 11 C 0.13 4.49 5.34 85.56 0.46 4.95 16 12 C -0.01 -0.47 6.11 24.83 0.15 -0.31 16 13 C -0.20 -5.54 10.81 22.19 0.24 -5.30 16 14 C -0.22 -5.56 10.91 22.19 0.24 -5.32 16 15 C -0.07 -2.01 12.09 66.97 0.81 -1.20 16 16 O -0.21 -8.12 10.13 -2.57 -0.03 -8.15 16 17 C 0.09 2.91 4.86 85.56 0.42 3.32 16 18 C -0.06 -1.80 5.18 -19.63 -0.10 -1.90 16 19 C -0.10 -2.01 9.78 22.35 0.22 -1.79 16 20 C 0.11 2.06 11.18 84.66 0.95 3.01 16 21 N -0.47 -13.67 10.34 -186.53 -1.93 -15.60 16 22 C 0.11 3.93 7.28 84.77 0.62 4.54 16 23 Cl -0.04 -1.27 28.78 -2.72 -0.08 -1.35 16 24 C 0.05 1.93 5.91 22.49 0.13 2.06 16 25 F -0.11 -5.13 12.06 44.97 0.54 -4.58 16 26 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.02 1.22 4.22 -2.39 -0.01 1.21 16 28 H 0.01 0.45 6.17 -2.39 -0.01 0.44 16 29 H 0.13 3.21 7.81 -2.38 -0.02 3.19 16 30 H 0.04 1.58 6.35 -2.39 -0.02 1.56 16 31 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 32 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.22 4.79 8.06 -2.91 -0.02 4.76 16 34 H 0.04 1.48 6.27 -2.38 -0.01 1.47 16 35 H 0.13 2.69 7.76 -2.39 -0.02 2.68 16 36 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -76.20 325.72 2.57 -73.63 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.08 Total: 4.07 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 5.03 Total: -15.25 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -5.86 Total: -97.36 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.03 Total: -8.15 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.54 Total: -4.58 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -76.20 2.57 -73.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823382271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.836 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds