Wall clock time and date at job start Tue Mar 31 2020 13:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 119.99881 * 2 1 4 4 H 1.48509 * 109.46953 * 239.99729 * 3 2 1 5 5 H 1.48502 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47264 * 120.00527 * 3 2 1 7 7 C 1.39931 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 164.60432 * 7 2 1 9 9 C 1.41410 * 119.99982 * 344.60307 * 7 2 1 10 10 C 1.40771 * 120.21067 * 335.37483 * 9 7 2 11 11 C 1.37642 * 119.88757 * 179.97438 * 10 9 7 12 12 C 1.38539 * 120.31770 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42682 * 0.02562 * 12 11 10 14 14 N 1.39959 * 119.94385 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99858 * 144.37140 * 14 13 12 16 16 O 1.21580 * 120.00383 * 4.52205 * 15 14 13 17 17 N 1.34776 * 119.99733 * 184.51685 * 15 14 13 18 18 C 1.46498 * 120.00258 * 179.97438 * 17 15 14 19 19 C 1.52992 * 109.47564 * 180.02562 * 18 17 15 20 20 S 1.82853 * 110.31003 * 57.20213 * 19 18 17 21 21 C 1.83108 * 99.46606 * 217.17591 * 20 19 18 22 22 C 1.54493 * 105.03712 * 44.18598 * 21 20 19 23 23 S 1.82119 * 106.98293 * 313.67135 * 22 21 20 24 24 C 1.38273 * 120.10746 * 0.23543 * 13 12 11 25 25 H 0.97001 * 119.99552 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05877 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.84446 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.78548 * 180.02562 * 12 11 10 29 29 H 0.96999 * 119.99586 * 324.36698 * 14 13 12 30 30 H 0.97001 * 120.00140 * 0.02562 * 17 15 14 31 31 H 1.09001 * 109.47223 * 300.01222 * 18 17 15 32 32 H 1.09007 * 109.46599 * 60.00387 * 18 17 15 33 33 H 1.09004 * 110.28025 * 179.30049 * 19 18 17 34 34 H 1.09003 * 110.26911 * 285.30911 * 21 20 19 35 35 H 1.09003 * 110.44028 * 163.14558 * 21 20 19 36 36 H 1.09008 * 109.95818 * 194.28854 * 22 21 20 37 37 H 1.08997 * 109.98812 * 73.07271 * 22 21 20 38 38 H 1.08004 * 120.15976 * 179.72593 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6964 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0589 -1.2288 -0.2478 9 6 1.3389 -2.4144 0.3262 10 6 0.1799 -2.3862 1.1246 11 6 -0.4664 -3.5606 1.4371 12 6 0.0186 -4.7714 0.9701 13 6 1.1646 -4.8146 0.1803 14 7 1.6461 -6.0435 -0.2856 15 6 2.2083 -6.1274 -1.5076 16 8 2.3722 -5.1222 -2.1717 17 7 2.5890 -7.3255 -1.9933 18 6 3.1997 -7.4169 -3.3218 19 6 3.5350 -8.8775 -3.6297 20 16 2.0310 -9.9113 -3.5176 21 6 2.7583 -11.4224 -2.7824 22 6 3.6946 -10.9133 -1.6640 23 16 4.6701 -9.5461 -2.3682 24 6 1.8308 -3.6460 -0.1399 25 1 -0.4849 0.8401 0.0004 26 1 -0.2022 -1.4447 1.4906 27 1 -1.3553 -3.5383 2.0500 28 1 -0.4955 -5.6877 1.2202 29 1 1.5751 -6.8347 0.2710 30 1 2.4580 -8.1275 -1.4636 31 1 2.5019 -7.0393 -4.0692 32 1 4.1127 -6.8217 -3.3437 33 1 3.9793 -8.9622 -4.6215 34 1 3.3276 -11.9710 -3.5328 35 1 1.9766 -12.0559 -2.3630 36 1 4.3579 -11.7155 -1.3402 37 1 3.1058 -10.5542 -0.8199 38 1 2.7223 -3.6790 -0.7487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823718245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:11 Heat of formation + Delta-G solvation = 3.558080 kcal Electronic energy + Delta-G solvation = -21989.285875 eV Core-core repulsion = 18663.166557 eV Total energy + Delta-G solvation = -3326.119318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.83811 -37.37001 -35.37419 -34.26246 -33.65201 -32.95131 -30.68415 -29.71777 -27.69721 -25.20966 -24.34257 -23.76226 -21.55120 -20.76270 -20.05268 -18.03732 -17.76141 -17.27574 -17.12514 -16.08648 -15.67095 -15.30311 -15.01940 -14.68347 -14.44035 -14.30578 -14.08201 -13.70909 -13.58420 -13.05280 -12.93399 -12.78035 -12.29693 -12.08870 -11.95087 -11.55069 -11.31935 -11.22106 -11.03881 -10.61098 -10.41982 -10.14965 -10.08898 -9.67009 -9.46137 -9.12319 -8.88667 -8.75743 -8.37674 -8.27568 -7.34256 -6.78553 -6.61426 -4.24371 0.63230 1.03060 1.23436 2.13320 2.82656 2.95364 3.12340 3.14093 3.17934 3.29886 3.80732 3.82926 4.03431 4.08907 4.24373 4.55552 4.70620 4.73772 4.77534 4.86349 5.03482 5.37432 5.52999 5.82498 6.32794 6.49519 6.56326 6.88419 6.90469 7.14037 7.21683 7.34988 7.44723 7.78546 7.93810 8.10170 8.20357 8.35567 8.53822 8.76494 8.99893 9.07323 9.15630 10.31600 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.002693 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.792165 B =10395.231829 C =10966.609935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.076 0.924 9 C 0.118 3.882 10 C -0.175 4.175 11 C -0.093 4.093 12 C -0.263 4.263 13 C 0.167 3.833 14 N -0.680 5.680 15 C 0.700 3.300 16 O -0.565 6.565 17 N -0.740 5.740 18 C 0.169 3.831 19 C -0.031 4.031 20 S -0.228 6.228 21 C -0.089 4.089 22 C -0.091 4.091 23 S -0.234 6.234 24 C -0.208 4.208 25 H 0.279 0.721 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.393 0.607 30 H 0.394 0.606 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -22.101 -3.919 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.094 0.906 9 C 0.114 3.886 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.285 4.285 13 C 0.075 3.925 14 N -0.326 5.326 15 C 0.401 3.599 16 O -0.441 6.441 17 N -0.399 5.399 18 C 0.041 3.959 19 C -0.270 4.270 20 S -0.001 6.001 21 C -0.239 4.239 22 C -0.242 4.242 23 S -0.008 6.008 24 C -0.230 4.230 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.226 0.774 30 H 0.230 0.770 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.489 -20.439 -4.651 21.669 hybrid contribution 0.171 -0.858 0.342 0.939 sum 5.661 -21.297 -4.309 22.454 Atomic orbital electron populations 1.69829 1.07487 1.29000 1.35946 1.25894 0.94754 1.01202 0.92395 0.86356 0.80077 0.80261 0.79916 1.19039 1.20424 1.18899 1.19533 0.97262 0.90868 1.40915 0.90565 1.17513 0.91258 0.91704 0.88081 1.21396 0.99289 0.96846 1.01923 1.20443 0.98329 0.92698 0.99764 1.20022 0.99477 0.96885 1.12101 1.17231 0.94028 0.83188 0.98090 1.42498 1.62994 1.11207 1.15893 1.15894 0.78850 0.83361 0.81843 1.90988 1.59755 1.34075 1.59253 1.45021 1.67782 1.08265 1.18864 1.20830 0.99574 0.90051 0.85479 1.26141 0.96201 1.00577 1.04032 1.88122 1.15350 1.12880 1.83785 1.24554 1.01909 0.98174 0.99254 1.24443 1.00407 0.98722 1.00618 1.87548 1.27029 1.39736 1.46521 1.21096 1.03582 0.91231 1.07101 0.91008 0.86124 0.89166 0.89472 0.77381 0.77046 0.89654 0.89247 0.84358 0.87915 0.85481 0.85986 0.87787 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.51 10.82 55.55 0.60 -20.91 16 2 C 0.07 1.96 5.19 -17.34 -0.09 1.87 16 3 Si 0.91 19.60 29.59 -169.99 -5.03 14.57 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.86 9.06 -37.74 -0.34 -13.20 16 8 H 0.08 2.09 7.89 -52.49 -0.41 1.68 16 9 C 0.12 3.32 5.58 -106.85 -0.60 2.73 16 10 C -0.17 -4.71 8.69 -38.84 -0.34 -5.05 16 11 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 12 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C 0.17 3.91 6.28 -83.76 -0.53 3.39 16 14 N -0.68 -12.68 5.34 -14.27 -0.08 -12.75 16 15 C 0.70 13.27 8.40 -86.92 -0.73 12.54 16 16 O -0.57 -13.49 13.82 5.30 0.07 -13.42 16 17 N -0.74 -10.04 4.99 -65.23 -0.33 -10.37 16 18 C 0.17 2.01 5.42 -4.05 -0.02 1.99 16 19 C -0.03 -0.27 3.87 37.15 0.14 -0.12 16 20 S -0.23 -1.95 21.39 -104.32 -2.23 -4.18 16 21 C -0.09 -0.44 7.05 37.94 0.27 -0.17 16 22 C -0.09 -0.48 6.85 37.94 0.26 -0.22 16 23 S -0.23 -2.00 21.48 -104.32 -2.24 -4.24 16 24 C -0.21 -5.59 8.43 -38.69 -0.33 -5.92 16 25 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 26 H 0.12 3.33 6.07 -52.49 -0.32 3.01 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.39 5.69 8.84 -40.82 -0.36 5.33 16 30 H 0.39 4.42 7.35 -40.82 -0.30 4.12 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.13 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.12 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 3.13 6.27 -52.48 -0.33 2.80 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -33.09 341.38 -11.83 -44.93 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.66 Total: 12.39 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.09 Total: -11.17 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.20 Total: -44.03 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.07 Total: -13.42 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -4.47 Total: -8.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.09 -11.83 -44.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823718245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.484 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds