Wall clock time and date at job start Tue Mar 31 2020 13:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 119.99881 * 2 1 4 4 H 1.48509 * 109.46953 * 239.99729 * 3 2 1 5 5 H 1.48502 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47264 * 120.00527 * 3 2 1 7 7 C 1.39931 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 164.60432 * 7 2 1 9 9 C 1.41410 * 119.99982 * 344.60307 * 7 2 1 10 10 C 1.40771 * 120.21067 * 335.37483 * 9 7 2 11 11 C 1.37642 * 119.88757 * 179.97438 * 10 9 7 12 12 C 1.38539 * 120.31770 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42682 * 0.02562 * 12 11 10 14 14 N 1.39959 * 119.94385 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99858 * 144.37140 * 14 13 12 16 16 O 1.21580 * 120.00383 * 4.52205 * 15 14 13 17 17 N 1.34776 * 119.99733 * 184.51685 * 15 14 13 18 18 C 1.46498 * 120.00258 * 179.97438 * 17 15 14 19 19 C 1.52992 * 109.47564 * 180.02562 * 18 17 15 20 20 S 1.82853 * 110.31003 * 57.20213 * 19 18 17 21 21 C 1.83108 * 99.46606 * 217.17591 * 20 19 18 22 22 C 1.54493 * 105.03712 * 44.18598 * 21 20 19 23 23 S 1.82119 * 106.98293 * 313.67135 * 22 21 20 24 24 C 1.38273 * 120.10746 * 0.23543 * 13 12 11 25 25 H 0.97001 * 119.99552 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05877 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.84446 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.78548 * 180.02562 * 12 11 10 29 29 H 0.96999 * 119.99586 * 324.36698 * 14 13 12 30 30 H 0.97001 * 120.00140 * 0.02562 * 17 15 14 31 31 H 1.09001 * 109.47223 * 300.01222 * 18 17 15 32 32 H 1.09007 * 109.46599 * 60.00387 * 18 17 15 33 33 H 1.09004 * 110.28025 * 179.30049 * 19 18 17 34 34 H 1.09003 * 110.26911 * 285.30911 * 21 20 19 35 35 H 1.09003 * 110.44028 * 163.14558 * 21 20 19 36 36 H 1.09008 * 109.95818 * 194.28854 * 22 21 20 37 37 H 1.08997 * 109.98812 * 73.07271 * 22 21 20 38 38 H 1.08004 * 120.15976 * 179.72593 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6964 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0589 -1.2288 -0.2478 9 6 1.3389 -2.4144 0.3262 10 6 0.1799 -2.3862 1.1246 11 6 -0.4664 -3.5606 1.4371 12 6 0.0186 -4.7714 0.9701 13 6 1.1646 -4.8146 0.1803 14 7 1.6461 -6.0435 -0.2856 15 6 2.2083 -6.1274 -1.5076 16 8 2.3722 -5.1222 -2.1717 17 7 2.5890 -7.3255 -1.9933 18 6 3.1997 -7.4169 -3.3218 19 6 3.5350 -8.8775 -3.6297 20 16 2.0310 -9.9113 -3.5176 21 6 2.7583 -11.4224 -2.7824 22 6 3.6946 -10.9133 -1.6640 23 16 4.6701 -9.5461 -2.3682 24 6 1.8308 -3.6460 -0.1399 25 1 -0.4849 0.8401 0.0004 26 1 -0.2022 -1.4447 1.4906 27 1 -1.3553 -3.5383 2.0500 28 1 -0.4955 -5.6877 1.2202 29 1 1.5751 -6.8347 0.2710 30 1 2.4580 -8.1275 -1.4636 31 1 2.5019 -7.0393 -4.0692 32 1 4.1127 -6.8217 -3.3437 33 1 3.9793 -8.9622 -4.6215 34 1 3.3276 -11.9710 -3.5328 35 1 1.9766 -12.0559 -2.3630 36 1 4.3579 -11.7155 -1.3402 37 1 3.1058 -10.5542 -0.8199 38 1 2.7223 -3.6790 -0.7487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823718245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:10 Heat of formation + Delta-G solvation = -17.315105 kcal Electronic energy + Delta-G solvation = -21990.191005 eV Core-core repulsion = 18663.166557 eV Total energy + Delta-G solvation = -3327.024447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42170 -39.18505 -36.71491 -36.04078 -34.81515 -34.09952 -31.85019 -31.71161 -29.43893 -27.22451 -24.96230 -24.63491 -23.17884 -22.66757 -21.72815 -19.62442 -19.37329 -18.24957 -17.87363 -17.39854 -16.96551 -16.69626 -16.42602 -16.24742 -16.01019 -15.42353 -15.08260 -14.84148 -14.69118 -14.57455 -14.39952 -13.90804 -13.56368 -13.50053 -13.12309 -13.02573 -12.80331 -12.68068 -12.52737 -12.19984 -11.97848 -11.83541 -11.57163 -11.29113 -11.01070 -10.76877 -10.64166 -10.16427 -9.35134 -9.05722 -8.95741 -8.66725 -8.57470 -6.34048 0.03551 0.35222 0.72698 0.96572 1.07185 1.36687 1.48778 1.53320 1.59574 1.67041 2.19401 2.23664 2.76979 3.22722 3.29255 3.43938 3.78525 3.91898 4.00073 4.33184 4.39911 4.49200 4.51873 4.53625 4.67553 4.68525 5.08771 5.13890 5.16877 5.22875 5.34061 5.39022 5.74157 5.86472 6.08930 6.16070 6.19844 6.40396 6.72557 6.97759 7.04636 7.09608 7.61165 8.36726 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.002693 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.792165 B =10395.231829 C =10966.609935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.087 3.913 10 C -0.200 4.200 11 C -0.091 4.091 12 C -0.250 4.250 13 C 0.174 3.826 14 N -0.668 5.668 15 C 0.697 3.303 16 O -0.618 6.618 17 N -0.714 5.714 18 C 0.166 3.834 19 C -0.014 4.014 20 S -0.271 6.271 21 C -0.071 4.071 22 C -0.079 4.079 23 S -0.275 6.275 24 C -0.236 4.236 25 H 0.288 0.712 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.417 0.583 30 H 0.409 0.591 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.110 0.890 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -24.776 -3.100 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.084 3.916 10 C -0.220 4.220 11 C -0.110 4.110 12 C -0.271 4.271 13 C 0.080 3.920 14 N -0.316 5.316 15 C 0.397 3.603 16 O -0.498 6.498 17 N -0.372 5.372 18 C 0.038 3.962 19 C -0.253 4.253 20 S -0.045 6.045 21 C -0.220 4.220 22 C -0.230 4.230 23 S -0.049 6.049 24 C -0.258 4.258 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.254 0.746 30 H 0.247 0.753 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.134 0.866 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.129 0.871 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.021 -23.221 -3.816 24.062 hybrid contribution 0.289 -0.289 0.092 0.418 sum 5.309 -23.510 -3.724 24.388 Atomic orbital electron populations 1.69871 1.08800 1.30451 1.36126 1.26747 0.95643 1.04380 0.91258 0.85239 0.78801 0.75596 0.79916 1.19028 1.18553 1.18159 1.19746 0.97153 0.92582 1.43638 0.91776 1.17852 0.92341 0.92402 0.88979 1.21373 0.99828 0.97672 1.03152 1.20827 0.98822 0.92103 0.99253 1.20447 0.98451 0.98144 1.10089 1.17290 0.93702 0.83877 0.97113 1.42237 1.62567 1.10573 1.16215 1.16101 0.78563 0.84008 0.81603 1.90968 1.61764 1.36418 1.60633 1.44781 1.66112 1.06961 1.19366 1.20876 0.98599 0.92605 0.84084 1.25921 0.96344 0.98249 1.04781 1.88276 1.16174 1.15568 1.84460 1.24665 1.02260 0.96000 0.99092 1.24564 1.00332 0.97629 1.00437 1.87732 1.28404 1.41824 1.46966 1.21038 1.03869 0.92627 1.08252 0.90121 0.87510 0.85868 0.85060 0.74574 0.75252 0.90834 0.90405 0.83020 0.86618 0.83069 0.83476 0.87101 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.88 10.82 21.82 0.24 -45.64 16 2 C 0.03 1.84 5.19 85.25 0.44 2.28 16 3 Si 0.98 41.22 29.59 68.60 2.03 43.25 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.50 -29.94 9.06 23.46 0.21 -29.72 16 8 H 0.06 3.80 7.89 -2.91 -0.02 3.77 16 9 C 0.09 5.16 5.58 -21.31 -0.12 5.04 16 10 C -0.20 -11.06 8.69 22.75 0.20 -10.87 16 11 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 12 C -0.25 -10.74 9.97 22.58 0.23 -10.51 16 13 C 0.17 8.11 6.28 38.09 0.24 8.35 16 14 N -0.67 -24.17 5.34 -317.33 -1.69 -25.86 16 15 C 0.70 26.57 8.40 179.06 1.50 28.08 16 16 O -0.62 -30.82 13.82 -3.97 -0.05 -30.88 16 17 N -0.71 -18.95 4.99 -478.55 -2.39 -21.34 16 18 C 0.17 4.00 5.42 86.38 0.47 4.46 16 19 C -0.01 -0.23 3.87 71.98 0.28 0.04 16 20 S -0.27 -4.11 21.39 -49.98 -1.07 -5.17 16 21 C -0.07 -0.43 7.05 72.49 0.51 0.08 16 22 C -0.08 -0.55 6.85 72.49 0.50 -0.05 16 23 S -0.27 -4.22 21.48 -49.98 -1.07 -5.29 16 24 C -0.24 -13.22 8.43 22.85 0.19 -13.03 16 25 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 26 H 0.11 6.10 6.07 -2.91 -0.02 6.08 16 27 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.42 10.93 8.84 -92.71 -0.82 10.11 16 30 H 0.41 8.43 7.35 -92.71 -0.68 7.75 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.15 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.15 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 5.25 6.27 -2.91 -0.02 5.24 16 Total: -1.00 -76.98 341.38 0.46 -76.51 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.39 Total: 34.33 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.87 Total: -19.90 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -3.85 Total: -92.84 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -2.14 Total: -10.47 kcal Total: -76.98 0.46 -76.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823718245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.199 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds