Wall clock time and date at job start Tue Mar 31 2020 13:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47031 * 119.99923 * 2 1 4 4 O 1.21637 * 120.00361 * 180.02562 * 3 2 1 5 5 N 1.34785 * 119.99971 * 0.02562 * 3 2 1 6 6 C 1.38736 * 119.99696 * 179.97438 * 5 3 2 7 7 N 1.29991 * 125.36072 * 179.97438 * 6 5 3 8 8 C 1.31573 * 117.12824 * 179.97438 * 7 6 5 9 9 C 1.50710 * 122.22343 * 179.97438 * 8 7 6 10 10 C 1.34675 * 115.54778 * 0.02562 * 8 7 6 11 11 S 1.76201 * 125.93074 * 180.02562 * 10 8 7 12 12 C 1.76203 * 99.99827 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99825 * 0.02562 * 12 11 10 14 14 C 1.38433 * 119.99931 * 180.02562 * 12 11 10 15 15 N 1.31803 * 119.99979 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99806 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47386 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47175 * 119.99909 * 16 14 12 19 19 H 1.48507 * 109.46994 * 239.99728 * 16 14 12 20 20 S 1.76138 * 125.37072 * 359.69649 * 6 5 3 21 21 C 1.33044 * 120.00177 * 180.02562 * 2 1 3 22 22 C 1.51578 * 135.78058 * 0.02562 * 21 2 1 23 23 C 1.53846 * 86.75330 * 205.13084 * 22 21 2 24 24 C 1.51582 * 135.78184 * 179.97438 * 21 2 1 25 25 H 1.09002 * 109.46962 * 269.99734 * 1 2 3 26 26 H 1.08996 * 109.47053 * 30.00051 * 1 2 3 27 27 H 1.08996 * 109.47098 * 149.99837 * 1 2 3 28 28 H 0.96996 * 119.99676 * 359.97438 * 5 3 2 29 29 H 1.09001 * 109.46917 * 90.02287 * 9 8 7 30 30 H 1.08996 * 109.46727 * 210.02267 * 9 8 7 31 31 H 1.09001 * 109.47306 * 330.02657 * 9 8 7 32 32 H 0.97002 * 120.00263 * 180.02562 * 15 14 12 33 33 H 1.08997 * 113.66822 * 90.66987 * 22 21 2 34 34 H 1.08994 * 113.66571 * 319.59892 * 22 21 2 35 35 H 1.09002 * 113.65420 * 89.68817 * 23 22 21 36 36 H 1.08998 * 113.65565 * 220.72523 * 23 22 21 37 37 H 1.09001 * 113.66228 * 40.40666 * 24 21 2 38 38 H 1.08998 * 113.66794 * 269.33403 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2422 1.2733 0.0000 4 8 3.4585 1.2734 -0.0005 5 7 1.5682 2.4406 0.0005 6 6 2.2619 3.6421 0.0011 7 7 1.7200 4.8236 0.0011 8 6 2.5343 5.8571 0.0022 9 6 2.0302 7.2774 0.0018 10 6 3.8482 5.5613 0.0026 11 16 5.1702 6.7262 0.0046 12 6 6.5469 5.6264 0.0049 13 1 6.3851 4.5587 0.0035 14 6 7.8360 6.1311 0.0069 15 7 8.0335 7.4343 0.0081 16 14 9.2954 4.9652 0.0065 17 1 8.8083 3.5624 0.0044 18 1 10.1202 5.2051 -1.2049 19 1 10.1180 5.2014 1.2201 20 16 4.0156 3.8069 0.0087 21 6 2.1723 -1.1522 -0.0005 22 6 1.8000 -2.6215 -0.0016 23 6 3.1692 -2.8790 0.6510 24 6 3.6310 -1.5644 -0.0012 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 0.5983 2.4405 0.0005 29 1 1.9079 7.6198 1.0294 30 1 2.7478 7.9174 -0.5115 31 1 1.0703 7.3221 -0.5127 32 1 8.9367 7.7880 0.0091 33 1 1.7042 -3.0479 -1.0002 34 1 0.9554 -2.8593 0.6449 35 1 3.1480 -2.8434 1.7403 36 1 3.6788 -3.7616 0.2645 37 1 4.2590 -0.9519 0.6459 38 1 4.0485 -1.6943 -0.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825568474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:13 Heat of formation + Delta-G solvation = 34.463148 kcal Electronic energy + Delta-G solvation = -21837.227290 eV Core-core repulsion = 18512.448116 eV Total energy + Delta-G solvation = -3324.779174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34527 -38.84102 -38.19879 -34.78050 -33.27231 -32.79672 -30.34696 -27.09468 -26.86715 -25.82373 -25.74429 -24.62676 -22.44157 -20.92272 -20.01893 -18.50051 -17.56256 -17.32703 -16.46730 -15.89757 -15.84783 -15.25224 -15.14588 -15.08410 -14.24270 -13.98117 -13.79578 -13.30572 -13.16928 -12.72691 -12.70508 -12.63462 -12.21840 -12.06390 -11.84736 -11.83103 -11.34602 -11.26436 -11.23419 -11.03423 -10.88478 -10.55681 -10.50643 -10.22373 -9.72035 -9.51018 -9.11641 -9.02737 -8.70489 -8.61414 -7.74795 -6.57838 -6.46205 -4.24951 1.00635 1.61583 1.93486 2.58951 2.94386 3.02508 3.10562 3.10996 3.19794 3.39394 3.71430 3.99969 4.12293 4.20528 4.47506 4.67850 4.84099 4.84755 5.00563 5.06764 5.23480 5.26023 5.33603 5.39348 5.43634 5.53756 5.61338 5.83342 5.98782 6.01101 6.04312 6.19684 6.25920 6.38919 6.50759 6.54457 7.02058 7.27861 7.35924 8.07265 8.07378 8.56093 8.90990 10.48107 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.003910 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.646737 B = 7159.108846 C = 9240.049607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.164 4.164 3 C 0.549 3.451 4 O -0.506 6.506 5 N -0.612 5.612 6 C 0.190 3.810 7 N -0.478 5.478 8 C 0.020 3.980 9 C -0.061 4.061 10 C -0.253 4.253 11 S 0.146 5.854 12 C -0.555 4.555 13 H 0.089 0.911 14 C 0.082 3.918 15 N -0.863 5.863 16 Si 0.924 3.076 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.275 1.275 20 S 0.202 5.798 21 C -0.060 4.060 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.106 4.106 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.413 0.587 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.276 0.724 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.280 -16.117 0.045 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.168 4.168 3 C 0.337 3.663 4 O -0.382 6.382 5 N -0.261 5.261 6 C -0.180 4.180 7 N -0.199 5.199 8 C -0.122 4.122 9 C -0.121 4.121 10 C -0.490 4.490 11 S 0.396 5.604 12 C -0.703 4.703 13 H 0.107 0.893 14 C -0.129 4.129 15 N -0.497 5.497 16 Si 0.748 3.252 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.200 1.200 20 S 0.446 5.554 21 C -0.062 4.062 22 C -0.141 4.141 23 C -0.178 4.178 24 C -0.142 4.142 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.252 0.748 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.834 -15.357 0.056 19.388 hybrid contribution -0.057 -1.115 0.019 1.117 sum -11.890 -16.472 0.075 20.315 Atomic orbital electron populations 1.20699 0.90205 1.03121 1.02677 1.20173 0.95826 0.90295 1.10470 1.18376 0.87425 0.83318 0.77152 1.90775 1.13107 1.85970 1.48331 1.42302 1.10362 1.02115 1.71354 1.23760 0.94839 0.88004 1.11445 1.65838 1.38800 0.96380 1.18909 1.19037 0.86779 0.94517 1.11891 1.20117 1.00677 0.89495 1.01766 1.28773 1.03978 1.04095 1.12135 1.83058 0.90404 1.05128 1.81820 1.23304 0.92184 0.95458 1.59403 0.89292 1.25021 0.98892 0.96012 0.92982 1.70021 1.23306 1.11253 1.45099 0.85997 0.80247 0.80612 0.78307 1.18793 1.20011 1.20017 1.85842 0.99999 0.97083 1.72488 1.23448 0.98237 0.93564 0.90955 1.22358 0.98592 0.91268 1.01928 1.22830 0.96218 0.98210 1.00586 1.22347 0.93736 0.95889 1.02270 0.90891 0.91427 0.90903 0.74807 0.91896 0.91054 0.91958 0.91404 0.88084 0.90254 0.89754 0.90502 0.89105 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.56 36.01 0.34 -0.49 16 2 C -0.16 -1.85 6.00 -102.86 -0.62 -2.47 16 3 C 0.55 8.48 7.71 -12.69 -0.10 8.39 16 4 O -0.51 -9.55 12.62 5.24 0.07 -9.48 16 5 N -0.61 -9.54 5.34 -12.89 -0.07 -9.61 16 6 C 0.19 3.79 8.39 -87.31 -0.73 3.06 16 7 N -0.48 -9.85 10.55 -9.81 -0.10 -9.95 16 8 C 0.02 0.43 6.73 -83.96 -0.57 -0.13 16 9 C -0.06 -1.09 10.02 36.01 0.36 -0.73 16 10 C -0.25 -5.97 6.67 29.47 0.20 -5.77 16 11 S 0.15 3.72 20.74 -107.50 -2.23 1.49 16 12 C -0.55 -15.32 9.26 30.80 0.29 -15.03 16 13 H 0.09 2.45 5.97 -52.49 -0.31 2.14 16 14 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 15 N -0.86 -24.02 13.22 55.47 0.73 -23.29 16 16 Si 0.92 20.89 29.55 -169.99 -5.02 15.86 16 17 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 S 0.20 4.57 18.34 -107.50 -1.97 2.60 16 21 C -0.06 -0.62 6.56 -100.37 -0.66 -1.28 16 22 C -0.10 -0.73 7.77 -27.01 -0.21 -0.94 16 23 C -0.14 -1.07 8.11 -25.94 -0.21 -1.28 16 24 C -0.11 -1.12 7.05 -27.01 -0.19 -1.31 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.47 6.70 -51.93 -0.35 0.12 16 27 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 28 H 0.41 5.04 6.92 -40.82 -0.28 4.75 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.27 7.37 -51.93 -0.38 0.89 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.28 7.10 8.32 -40.82 -0.34 6.76 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -31.92 346.79 -10.20 -42.12 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.64 Total: 0.90 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.19 Total: -15.86 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.56 Total: -42.85 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -4.20 Total: 4.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.92 -10.20 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825568474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.582 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds