Wall clock time and date at job start Tue Mar 31 2020 13:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47031 * 119.99923 * 2 1 4 4 O 1.21637 * 120.00361 * 180.02562 * 3 2 1 5 5 N 1.34785 * 119.99971 * 0.02562 * 3 2 1 6 6 C 1.38736 * 119.99696 * 179.97438 * 5 3 2 7 7 N 1.29991 * 125.36072 * 179.97438 * 6 5 3 8 8 C 1.31573 * 117.12824 * 179.97438 * 7 6 5 9 9 C 1.50710 * 122.22343 * 179.97438 * 8 7 6 10 10 C 1.34675 * 115.54778 * 0.02562 * 8 7 6 11 11 S 1.76201 * 125.93074 * 180.02562 * 10 8 7 12 12 C 1.76203 * 99.99827 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99825 * 0.02562 * 12 11 10 14 14 C 1.38433 * 119.99931 * 180.02562 * 12 11 10 15 15 N 1.31803 * 119.99979 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99806 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47386 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47175 * 119.99909 * 16 14 12 19 19 H 1.48507 * 109.46994 * 239.99728 * 16 14 12 20 20 S 1.76138 * 125.37072 * 359.69649 * 6 5 3 21 21 C 1.33044 * 120.00177 * 180.02562 * 2 1 3 22 22 C 1.51578 * 135.78058 * 0.02562 * 21 2 1 23 23 C 1.53846 * 86.75330 * 205.13084 * 22 21 2 24 24 C 1.51582 * 135.78184 * 179.97438 * 21 2 1 25 25 H 1.09002 * 109.46962 * 269.99734 * 1 2 3 26 26 H 1.08996 * 109.47053 * 30.00051 * 1 2 3 27 27 H 1.08996 * 109.47098 * 149.99837 * 1 2 3 28 28 H 0.96996 * 119.99676 * 359.97438 * 5 3 2 29 29 H 1.09001 * 109.46917 * 90.02287 * 9 8 7 30 30 H 1.08996 * 109.46727 * 210.02267 * 9 8 7 31 31 H 1.09001 * 109.47306 * 330.02657 * 9 8 7 32 32 H 0.97002 * 120.00263 * 180.02562 * 15 14 12 33 33 H 1.08997 * 113.66822 * 90.66987 * 22 21 2 34 34 H 1.08994 * 113.66571 * 319.59892 * 22 21 2 35 35 H 1.09002 * 113.65420 * 89.68817 * 23 22 21 36 36 H 1.08998 * 113.65565 * 220.72523 * 23 22 21 37 37 H 1.09001 * 113.66228 * 40.40666 * 24 21 2 38 38 H 1.08998 * 113.66794 * 269.33403 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2422 1.2733 0.0000 4 8 3.4585 1.2734 -0.0005 5 7 1.5682 2.4406 0.0005 6 6 2.2619 3.6421 0.0011 7 7 1.7200 4.8236 0.0011 8 6 2.5343 5.8571 0.0022 9 6 2.0302 7.2774 0.0018 10 6 3.8482 5.5613 0.0026 11 16 5.1702 6.7262 0.0046 12 6 6.5469 5.6264 0.0049 13 1 6.3851 4.5587 0.0035 14 6 7.8360 6.1311 0.0069 15 7 8.0335 7.4343 0.0081 16 14 9.2954 4.9652 0.0065 17 1 8.8083 3.5624 0.0044 18 1 10.1202 5.2051 -1.2049 19 1 10.1180 5.2014 1.2201 20 16 4.0156 3.8069 0.0087 21 6 2.1723 -1.1522 -0.0005 22 6 1.8000 -2.6215 -0.0016 23 6 3.1692 -2.8790 0.6510 24 6 3.6310 -1.5644 -0.0012 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 0.5983 2.4405 0.0005 29 1 1.9079 7.6198 1.0294 30 1 2.7478 7.9174 -0.5115 31 1 1.0703 7.3221 -0.5127 32 1 8.9367 7.7880 0.0091 33 1 1.7042 -3.0479 -1.0002 34 1 0.9554 -2.8593 0.6449 35 1 3.1480 -2.8434 1.7403 36 1 3.6788 -3.7616 0.2645 37 1 4.2590 -0.9519 0.6459 38 1 4.0485 -1.6943 -0.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825568474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:13 Heat of formation + Delta-G solvation = 15.675729 kcal Electronic energy + Delta-G solvation = -21838.041974 eV Core-core repulsion = 18512.448116 eV Total energy + Delta-G solvation = -3325.593858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60702 -40.27044 -39.28342 -36.20903 -34.82886 -34.15340 -31.87648 -28.80153 -27.73668 -27.57693 -26.52960 -25.92732 -23.61771 -22.24217 -21.40199 -20.14102 -19.11871 -18.69363 -17.62935 -17.45795 -17.08709 -16.90497 -16.45233 -16.29426 -15.67109 -15.45794 -14.96008 -14.81885 -14.38930 -13.99752 -13.53405 -13.45623 -13.39744 -13.35085 -13.26299 -13.08207 -12.91698 -12.89161 -12.49766 -12.35603 -12.14082 -12.04756 -11.86482 -11.53708 -11.35633 -11.08338 -10.75729 -10.49324 -10.47663 -9.94357 -9.50590 -8.58839 -8.36873 -6.30833 -0.32992 0.20523 0.28190 0.82536 1.25631 1.31027 1.39619 1.51344 1.67044 1.69532 2.13388 2.18957 2.80226 3.08576 3.22547 3.48544 3.69987 3.80079 3.86724 4.22838 4.36408 4.42659 4.64523 4.69922 4.73322 4.77434 4.82474 4.84194 4.96743 4.97722 5.02767 5.04179 5.09234 5.28846 5.30681 5.34472 5.46616 5.59194 6.00966 6.02359 6.78716 6.85223 6.86090 8.49327 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.003910 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.646737 B = 7159.108846 C = 9240.049607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.178 4.178 3 C 0.543 3.457 4 O -0.543 6.543 5 N -0.601 5.601 6 C 0.227 3.773 7 N -0.484 5.484 8 C 0.038 3.962 9 C -0.062 4.062 10 C -0.283 4.283 11 S 0.100 5.900 12 C -0.576 4.576 13 H 0.079 0.921 14 C 0.036 3.964 15 N -0.895 5.895 16 Si 0.986 3.014 17 H -0.270 1.270 18 H -0.262 1.262 19 H -0.262 1.262 20 S 0.157 5.843 21 C -0.059 4.059 22 C -0.086 4.086 23 C -0.132 4.132 24 C -0.126 4.126 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.433 0.567 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.282 0.718 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 -18.942 -0.031 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.334 3.666 4 O -0.421 6.421 5 N -0.253 5.253 6 C -0.146 4.146 7 N -0.206 5.206 8 C -0.104 4.104 9 C -0.121 4.121 10 C -0.518 4.518 11 S 0.348 5.652 12 C -0.724 4.724 13 H 0.097 0.903 14 C -0.171 4.171 15 N -0.530 5.530 16 Si 0.807 3.193 17 H -0.195 1.195 18 H -0.187 1.187 19 H -0.187 1.187 20 S 0.402 5.598 21 C -0.061 4.061 22 C -0.122 4.122 23 C -0.169 4.169 24 C -0.163 4.163 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.276 0.724 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.463 -18.211 -0.019 23.256 hybrid contribution 0.517 -0.472 0.045 0.702 sum -13.945 -18.683 0.026 23.314 Atomic orbital electron populations 1.20776 0.87012 1.04537 1.03919 1.20250 0.97685 0.87915 1.12307 1.19360 0.87288 0.84431 0.75514 1.90774 1.15187 1.86359 1.49776 1.42472 1.11326 1.00639 1.70894 1.24096 0.93875 0.89389 1.07212 1.66052 1.37766 0.96196 1.20578 1.19730 0.86252 0.96346 1.08049 1.20251 1.01640 0.87081 1.03132 1.28603 1.04009 1.03709 1.15511 1.82844 0.91132 1.06167 1.85084 1.23479 0.93416 0.95319 1.60230 0.90292 1.25874 1.01217 0.97567 0.92474 1.70093 1.24161 1.12627 1.46126 0.85089 0.77081 0.78007 0.79138 1.19455 1.18673 1.18695 1.86050 1.02826 0.97605 1.73351 1.23956 0.98193 0.95417 0.88577 1.22417 0.98736 0.87673 1.03406 1.22819 0.96683 0.96890 1.00554 1.22494 0.93892 0.97789 1.02099 0.89654 0.90908 0.88629 0.72418 0.90273 0.91315 0.89437 0.90878 0.85938 0.87923 0.89731 0.88674 0.92533 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.56 71.24 0.68 -0.51 16 2 C -0.18 -3.61 6.00 -18.72 -0.11 -3.72 16 3 C 0.54 16.37 7.71 86.55 0.67 17.03 16 4 O -0.54 -20.95 12.62 -4.15 -0.05 -21.00 16 5 N -0.60 -17.87 5.34 -312.94 -1.67 -19.54 16 6 C 0.23 8.91 8.39 179.19 1.50 10.41 16 7 N -0.48 -19.34 10.55 -184.95 -1.95 -21.29 16 8 C 0.04 1.61 6.73 41.78 0.28 1.89 16 9 C -0.06 -2.13 10.02 71.24 0.71 -1.42 16 10 C -0.28 -13.72 6.67 67.00 0.45 -13.28 16 11 S 0.10 5.36 20.74 -56.49 -1.17 4.19 16 12 C -0.58 -33.29 9.26 67.87 0.63 -32.66 16 13 H 0.08 4.59 5.97 -2.91 -0.02 4.57 16 14 C 0.04 2.00 5.49 84.74 0.46 2.46 16 15 N -0.90 -51.34 13.22 21.59 0.29 -51.05 16 16 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 20 S 0.16 7.34 18.34 -56.49 -1.04 6.30 16 21 C -0.06 -1.10 6.56 -17.10 -0.11 -1.21 16 22 C -0.09 -0.84 7.77 30.41 0.24 -0.60 16 23 C -0.13 -1.65 8.11 31.11 0.25 -1.40 16 24 C -0.13 -2.59 7.05 30.41 0.21 -2.38 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.73 6.70 -2.39 -0.02 0.72 16 27 H 0.09 0.68 7.88 -2.39 -0.02 0.66 16 28 H 0.43 9.43 6.92 -92.71 -0.64 8.79 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.07 2.44 7.37 -2.39 -0.02 2.42 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.28 14.83 8.32 -92.71 -0.77 14.05 16 33 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.54 7.48 -2.39 -0.02 1.53 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -72.90 346.79 2.76 -70.14 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.47 Total: 11.71 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 5.87 Total: -25.38 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -3.34 Total: -91.88 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 12.70 SS G_CDS: -2.21 Total: 10.49 kcal Total: -72.90 2.76 -70.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825568474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.812 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds