Wall clock time and date at job start Tue Mar 31 2020 13:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33243 * 125.12428 * 2 1 4 4 C 1.38548 * 114.99038 * 179.73293 * 3 2 1 5 5 C 1.34179 * 114.71250 * 0.46361 * 4 3 2 6 6 S 1.76192 * 125.24362 * 179.83031 * 5 4 3 7 7 C 1.81404 * 102.99967 * 179.71619 * 6 5 4 8 8 C 1.50701 * 109.47098 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47162 * 90.00410 * 11 10 8 13 13 H 1.07998 * 119.99576 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00057 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47241 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47303 * 119.99759 * 16 14 12 19 19 H 1.48495 * 109.47340 * 239.99921 * 16 14 12 20 20 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 21 21 C 1.53001 * 109.47305 * 89.99580 * 20 10 8 22 22 C 1.47208 * 109.47132 * 179.97438 * 21 20 10 23 23 N 7.66735 * 100.78529 * 191.03641 * 2 1 3 24 24 S 1.75854 * 125.11974 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46738 * 299.99767 * 1 2 3 27 27 H 1.08996 * 109.47182 * 59.99418 * 1 2 3 28 28 H 1.07998 * 122.50362 * 359.97438 * 3 2 1 29 29 H 1.07998 * 122.64129 * 180.26751 * 4 3 2 30 30 H 1.09002 * 109.47124 * 60.00075 * 7 6 5 31 31 H 1.09001 * 109.46975 * 300.00196 * 7 6 5 32 32 H 1.09000 * 109.47018 * 209.99971 * 11 10 8 33 33 H 1.09000 * 109.47828 * 330.00266 * 11 10 8 34 34 H 0.97001 * 119.99961 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47028 * 209.99878 * 20 10 8 36 36 H 1.09002 * 109.47109 * 329.99455 * 20 10 8 37 37 H 1.09001 * 109.47263 * 299.99631 * 21 20 10 38 38 H 1.08996 * 109.47107 * 60.00334 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2737 1.0898 0.0000 4 6 3.6375 0.8460 0.0059 5 6 3.9753 -0.4525 0.0008 6 16 5.6239 -1.0743 0.0018 7 6 5.3819 -2.8721 0.0019 8 6 6.7231 -3.5595 0.0021 9 8 7.7418 -2.9013 0.0028 10 7 6.7904 -4.9056 0.0027 11 6 8.0941 -5.5737 0.0035 12 6 8.5406 -5.8023 1.4247 13 1 7.9158 -5.4815 2.2451 14 6 9.7466 -6.4209 1.6774 15 7 10.5071 -6.8119 0.6783 16 14 10.2996 -6.7049 3.4389 17 1 9.2716 -6.1771 4.3716 18 1 10.4801 -8.1602 3.6725 19 1 11.5868 -6.0025 3.6730 20 6 5.5599 -5.7005 0.0025 21 6 5.1321 -5.9778 -1.4400 22 6 3.8959 -6.7771 -1.4402 23 7 2.9418 -7.3926 -1.4419 24 16 2.5187 -1.4384 0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8626 2.0885 -0.0004 29 1 4.3709 1.6388 0.0108 30 1 4.8248 -3.1638 -0.8884 31 1 4.8236 -3.1636 0.8915 32 1 8.0118 -6.5316 -0.5099 33 1 8.8237 -4.9476 -0.5102 34 1 11.3554 -7.2474 0.8560 35 1 5.7375 -6.6451 0.5168 36 1 4.7716 -5.1499 0.5159 37 1 4.9544 -5.0333 -1.9543 38 1 5.9203 -6.5284 -1.9533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830038043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:29 Heat of formation + Delta-G solvation = 22.235109 kcal Electronic energy + Delta-G solvation = -21590.515420 eV Core-core repulsion = 18265.205998 eV Total energy + Delta-G solvation = -3325.309421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.40874 -37.95023 -36.95739 -35.40408 -33.01541 -32.18465 -30.97221 -30.31445 -27.13872 -26.83103 -24.15559 -23.39830 -22.87231 -20.09609 -18.62246 -17.72358 -17.66556 -16.83772 -16.55038 -16.30407 -15.53100 -15.23752 -14.93386 -14.77839 -14.27820 -14.21082 -13.89114 -13.48075 -13.34624 -13.08261 -12.90337 -12.61488 -12.54174 -12.52199 -12.33244 -12.08757 -12.01255 -11.80506 -11.35301 -11.10318 -11.05784 -10.93806 -10.70675 -10.25727 -10.20208 -9.77733 -9.59891 -9.34076 -8.69260 -8.53160 -8.01941 -7.32901 -6.14866 -4.19886 0.71818 1.10887 1.23691 1.74695 2.44839 2.52956 2.65520 2.75366 3.02614 3.25321 3.33915 3.36673 3.50980 4.04877 4.36907 4.61968 4.73610 4.83294 4.87598 4.97273 5.05896 5.15071 5.16095 5.21188 5.21803 5.36690 5.42331 5.61813 5.71653 5.86804 5.96125 6.00623 6.29277 6.76586 7.21849 7.30189 7.50892 7.80510 8.03477 8.09017 8.62272 8.85572 9.46115 10.93387 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.003391 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.822446 B = 8255.966577 C = 9588.583899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.184 4.184 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.209 4.209 6 S 0.035 5.965 7 C -0.163 4.163 8 C 0.528 3.472 9 O -0.512 6.512 10 N -0.588 5.588 11 C 0.245 3.755 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.114 3.886 21 C -0.051 4.051 22 C 0.216 3.784 23 N -0.442 5.442 24 S 0.100 5.900 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.562 11.279 -3.671 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.305 4.305 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.438 4.438 6 S 0.275 5.725 7 C -0.315 4.315 8 C 0.312 3.688 9 O -0.388 6.388 10 N -0.320 5.320 11 C 0.127 3.873 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.012 4.012 21 C -0.093 4.093 22 C -0.102 4.102 23 N -0.119 5.119 24 S 0.359 5.641 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.382 9.551 -3.712 20.177 hybrid contribution -0.295 0.733 0.960 1.243 sum -17.677 10.284 -2.752 20.635 Atomic orbital electron populations 1.20307 0.87850 1.02824 1.02890 1.24379 0.99828 0.95402 1.10884 1.19987 0.92339 0.99204 1.04013 1.19829 0.96159 0.94521 1.05236 1.26591 1.02269 1.00897 1.14027 1.86179 0.95459 0.99624 1.91254 1.24115 1.02741 0.97270 1.07422 1.19202 0.88350 0.83036 0.78200 1.90754 1.35624 1.63644 1.48734 1.48139 1.08548 1.04105 1.71225 1.19444 0.77403 0.92506 0.97972 1.21428 1.04559 1.38869 0.92143 0.92219 1.24910 0.96165 0.95335 0.97490 1.69924 1.12307 1.40127 1.30738 0.86446 0.78830 0.77716 0.84481 1.19743 1.20948 1.20809 1.21376 0.87650 0.98881 0.93310 1.19891 0.89165 0.98859 1.01367 1.29018 0.94337 0.93631 0.93247 1.81188 1.12094 1.10138 1.08462 1.84310 0.95319 1.09537 1.74930 0.91588 0.90595 0.90605 0.84123 0.83910 0.87029 0.86777 0.94338 0.93293 0.92625 0.88246 0.90707 0.87669 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.37 36.01 0.37 -0.16 16 2 C -0.18 -1.75 6.50 -36.05 -0.23 -1.99 16 3 C -0.12 -1.18 10.04 -41.21 -0.41 -1.60 16 4 C -0.12 -1.32 10.13 -40.90 -0.41 -1.73 16 5 C -0.21 -2.55 6.69 29.30 0.20 -2.36 16 6 S 0.03 0.49 21.22 -107.50 -2.28 -1.79 16 7 C -0.16 -2.16 4.06 36.01 0.15 -2.01 16 8 C 0.53 9.46 7.69 -10.98 -0.08 9.38 16 9 O -0.51 -11.57 15.44 5.56 0.09 -11.48 16 10 N -0.59 -10.32 2.46 -175.06 -0.43 -10.75 16 11 C 0.25 5.61 5.16 -5.19 -0.03 5.58 16 12 C -0.53 -13.85 9.39 -34.44 -0.32 -14.17 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.11 1.44 5.17 -4.05 -0.02 1.42 16 21 C -0.05 -0.51 6.03 -29.51 -0.18 -0.69 16 22 C 0.22 2.51 15.43 -20.78 -0.32 2.19 16 23 N -0.44 -6.30 18.53 42.13 0.78 -5.52 16 24 S 0.10 1.06 22.30 -107.50 -2.40 -1.34 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.17 7.19 -51.92 -0.37 0.80 16 31 H 0.11 1.35 7.40 -51.92 -0.38 0.96 16 32 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 36 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 37 H 0.11 0.84 7.22 -51.93 -0.38 0.47 16 38 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -32.21 362.83 -9.23 -41.44 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.77 Total: -3.15 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.40 Total: -4.52 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.09 Total: -40.55 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -4.68 Total: -3.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.21 -9.23 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830038043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.672 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds