Wall clock time and date at job start Tue Mar 31 2020 13:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38096 * 119.94644 * 2 1 4 4 C 1.38581 * 120.45470 * 180.28149 * 3 2 1 5 5 C 1.37714 * 120.33847 * 359.43899 * 4 3 2 6 6 C 1.39983 * 119.87930 * 0.28048 * 5 4 3 7 7 C 1.46784 * 120.22131 * 180.02562 * 6 5 4 8 8 O 1.21299 * 120.00343 * 179.97438 * 7 6 5 9 9 C 1.38648 * 119.94145 * 179.72336 * 2 1 3 10 10 O 1.35603 * 120.17523 * 359.97438 * 9 2 1 11 11 S 1.52191 * 113.99910 * 268.96534 * 10 9 2 12 12 O 1.42100 * 104.27676 * 182.81942 * 11 10 9 13 13 O 1.42104 * 104.27601 * 310.67033 * 11 10 9 14 14 C 1.81400 * 104.45281 * 66.74507 * 11 10 9 15 15 C 1.52997 * 109.46897 * 172.56743 * 14 11 10 16 16 C 1.50697 * 115.55204 * 53.49875 * 15 14 11 17 17 H 1.08010 * 119.99850 * 271.87362 * 16 15 14 18 18 C 1.37875 * 120.00441 * 91.87949 * 16 15 14 19 19 N 1.31514 * 119.99665 * 3.93090 * 18 16 15 20 20 Si 1.86796 * 120.00292 * 183.93708 * 18 16 15 21 21 H 1.48499 * 109.47122 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47410 * 119.99632 * 20 18 16 23 23 H 1.48505 * 109.47224 * 239.99502 * 20 18 16 24 24 C 1.53002 * 117.50021 * 267.82117 * 15 14 11 25 25 C 1.53002 * 117.49652 * 199.16840 * 15 14 11 26 26 H 1.08998 * 109.46925 * 277.98205 * 1 2 3 27 27 H 1.08998 * 109.46988 * 37.98638 * 1 2 3 28 28 H 1.09004 * 109.47006 * 157.98128 * 1 2 3 29 29 H 1.08005 * 119.77243 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.82983 * 179.71671 * 4 3 2 31 31 H 1.08002 * 120.06369 * 180.25274 * 5 4 3 32 32 H 1.08006 * 120.00129 * 359.97438 * 7 6 5 33 33 H 1.09003 * 109.46583 * 292.56538 * 14 11 10 34 34 H 1.08994 * 109.46750 * 52.56929 * 14 11 10 35 35 H 0.97005 * 120.00268 * 185.01247 * 19 18 16 36 36 H 1.08998 * 117.49480 * 0.02562 * 24 15 14 37 37 H 1.09006 * 117.49856 * 145.01709 * 24 15 14 38 38 H 1.09006 * 117.49985 * 214.98072 * 25 15 14 39 39 H 1.08997 * 117.50151 * 359.97253 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1966 0.0000 4 6 3.5821 1.2089 -0.0059 5 6 4.2883 0.0266 -0.0001 6 6 3.6038 -1.1945 0.0057 7 6 4.3490 -2.4591 0.0124 8 8 3.7518 -3.5149 0.0180 9 6 2.1990 -1.2014 0.0058 10 8 1.5234 -2.3771 0.0120 11 16 1.2373 -2.9193 1.4050 12 8 0.5951 -4.1652 1.1711 13 8 2.4913 -2.8551 2.0704 14 6 0.0734 -1.7283 2.1241 15 6 -0.4380 -2.2605 3.4643 16 6 0.6262 -2.6514 4.4572 17 1 1.0312 -3.6526 4.4485 18 6 1.0826 -1.7311 5.3767 19 7 0.5357 -0.5366 5.4386 20 14 2.4779 -2.1806 6.5345 21 1 2.9158 -3.5736 6.2645 22 1 3.6174 -1.2527 6.3202 23 1 2.0094 -2.0729 7.9396 24 6 -1.7288 -3.0819 3.4521 25 6 -1.7321 -1.6589 4.0159 26 1 -0.3633 0.1427 1.0177 27 1 -0.3633 0.8099 -0.6325 28 1 -0.3633 -0.9528 -0.3853 29 1 1.6518 2.1293 0.0004 30 1 4.1110 2.1506 -0.0104 31 1 5.3682 0.0414 -0.0006 32 1 5.4290 -2.4496 0.0124 33 1 0.5790 -0.7754 2.2807 34 1 -0.7672 -1.5864 1.4450 35 1 0.9035 0.1350 6.0341 36 1 -2.2134 -3.2434 2.4893 37 1 -1.8084 -3.9049 4.1624 38 1 -1.8139 -1.5462 5.0970 39 1 -2.2189 -0.8836 3.4243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831005570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:58 Heat of formation + Delta-G solvation = -75.823736 kcal Electronic energy + Delta-G solvation = -27134.538048 eV Core-core repulsion = 23329.930854 eV Total energy + Delta-G solvation = -3804.607194 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22691 -38.42883 -37.95764 -36.78968 -36.26404 -35.11764 -33.26588 -32.02509 -30.76780 -28.65009 -27.00213 -25.43425 -25.02416 -22.63208 -21.22877 -21.09679 -20.32087 -19.23144 -17.90643 -17.16550 -16.96015 -16.42984 -16.19269 -15.47987 -15.08172 -14.83916 -14.70068 -14.28580 -14.06201 -13.94397 -13.62069 -13.39977 -13.15679 -12.87201 -12.53513 -12.27264 -12.11122 -11.79359 -11.70617 -11.61490 -11.35080 -11.21393 -11.13549 -11.00976 -10.92524 -10.48728 -10.39468 -10.04141 -9.67058 -9.62178 -9.11341 -9.01684 -8.85159 -8.48656 -8.10160 -6.15866 -4.28542 0.35346 0.79096 1.33376 2.50669 2.84459 3.28724 3.36165 3.46942 3.54594 4.11461 4.38174 4.44005 4.50789 4.65904 4.80714 4.92561 4.98106 5.01909 5.13233 5.17035 5.25648 5.49690 5.55666 5.58660 5.62286 5.84893 5.91833 6.01281 6.09753 6.17053 6.20236 6.24203 6.35962 6.57274 6.71233 6.75090 6.98118 7.21448 7.52130 7.55238 7.77205 8.17388 8.78463 9.44735 10.90641 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.006524 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.182096 B = 4290.628807 C = 4502.100807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.074 4.074 4 C -0.120 4.120 5 C -0.064 4.064 6 C -0.166 4.166 7 C 0.383 3.617 8 O -0.438 6.438 9 C 0.130 3.870 10 O -0.668 6.668 11 S 2.603 3.397 12 O -0.939 6.939 13 O -0.938 6.938 14 C -0.594 4.594 15 C 0.038 3.962 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.086 3.914 19 N -0.872 5.872 20 Si 0.890 3.110 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.283 1.283 24 C -0.209 4.209 25 C -0.126 4.126 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 8.293 -12.104 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.139 4.139 5 C -0.082 4.082 6 C -0.169 4.169 7 C 0.239 3.761 8 O -0.309 6.309 9 C 0.087 3.913 10 O -0.625 6.625 11 S 2.701 3.299 12 O -0.937 6.937 13 O -0.936 6.936 14 C -0.723 4.723 15 C 0.036 3.964 16 C -0.557 4.557 17 H 0.086 0.914 18 C -0.119 4.119 19 N -0.508 5.508 20 Si 0.717 3.283 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.209 1.209 24 C -0.246 4.246 25 C -0.165 4.165 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.748 7.141 -12.241 14.946 hybrid contribution 0.282 0.517 0.865 1.047 sum 5.031 7.658 -11.376 14.607 Atomic orbital electron populations 1.21496 0.89887 1.04015 1.04941 1.20093 0.97456 0.91555 1.01107 1.21146 0.94360 0.97025 0.96696 1.21227 0.94108 0.98577 0.99980 1.21296 1.00490 0.90437 0.95996 1.21253 0.92548 0.97909 1.05239 1.23777 0.94973 0.86219 0.71113 1.90524 1.73747 1.33876 1.32711 1.18096 0.89427 0.81460 1.02268 1.85708 1.75435 1.42003 1.59387 1.05378 0.76398 0.76312 0.71787 1.93517 1.78187 1.39432 1.82605 1.93524 1.40194 1.86447 1.73445 1.30790 1.15150 1.16802 1.09568 1.18227 0.88498 0.99836 0.89880 1.20602 1.20857 0.98867 1.15389 0.91406 1.24911 0.95858 0.95004 0.96136 1.70025 1.38609 1.04107 1.38013 0.86537 0.82149 0.79638 0.79975 1.19037 1.20473 1.20947 1.23214 1.04364 0.95838 1.01220 1.22480 1.00825 0.92615 1.00610 0.88011 0.90039 0.90744 0.84208 0.84460 0.83830 0.87108 0.85076 0.87238 0.92836 0.91155 0.89512 0.88732 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.72 36.01 0.28 -1.58 16 2 C -0.10 -1.41 4.98 -104.52 -0.52 -1.93 16 3 C -0.07 -0.81 9.71 -39.51 -0.38 -1.19 16 4 C -0.12 -1.16 10.02 -39.65 -0.40 -1.56 16 5 C -0.06 -0.68 9.79 -39.12 -0.38 -1.07 16 6 C -0.17 -2.54 5.39 -104.95 -0.57 -3.10 16 7 C 0.38 5.99 10.62 34.18 0.36 6.36 16 8 O -0.44 -9.06 13.98 -25.44 -0.36 -9.42 16 9 C 0.13 2.26 4.87 -38.59 -0.19 2.07 16 10 O -0.67 -13.55 7.63 -53.94 -0.41 -13.96 16 11 S 2.60 60.90 4.06 -107.50 -0.44 60.47 16 12 O -0.94 -24.47 18.09 -67.04 -1.21 -25.68 16 13 O -0.94 -23.84 13.68 -70.41 -0.96 -24.80 16 14 C -0.59 -12.73 3.49 37.16 0.13 -12.60 16 15 C 0.04 0.93 1.68 -155.66 -0.26 0.67 16 16 C -0.52 -14.47 7.61 -34.44 -0.26 -14.73 16 17 H 0.07 1.96 7.82 -52.48 -0.41 1.55 16 18 C 0.09 2.36 5.41 -17.82 -0.10 2.26 16 19 N -0.87 -23.69 12.08 55.43 0.67 -23.02 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.21 -4.71 9.92 -26.70 -0.26 -4.98 16 25 C -0.13 -2.90 8.92 -26.70 -0.24 -3.14 16 26 H 0.10 1.36 5.48 -51.93 -0.28 1.08 16 27 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.07 0.97 6.62 -51.93 -0.34 0.62 16 29 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 2.75 6.23 -51.92 -0.32 2.42 16 34 H 0.11 1.95 5.82 -51.93 -0.30 1.65 16 35 H 0.26 6.75 8.32 -40.82 -0.34 6.42 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 38 H 0.09 2.33 7.78 -51.93 -0.40 1.93 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -36.20 333.37 -10.08 -46.29 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.58 Total: 2.87 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -2.79 Total: -34.52 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.67 Total: -23.02 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: -2.94 Total: -73.86 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 60.90 SS G_CDS: -0.44 Total: 60.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.20 -10.08 -46.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831005570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.539 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds