Wall clock time and date at job start Tue Mar 31 2020 13:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38096 * 119.94644 * 2 1 4 4 C 1.38581 * 120.45470 * 180.28149 * 3 2 1 5 5 C 1.37714 * 120.33847 * 359.43899 * 4 3 2 6 6 C 1.39983 * 119.87930 * 0.28048 * 5 4 3 7 7 C 1.46784 * 120.22131 * 180.02562 * 6 5 4 8 8 O 1.21299 * 120.00343 * 179.97438 * 7 6 5 9 9 C 1.38648 * 119.94145 * 179.72336 * 2 1 3 10 10 O 1.35603 * 120.17523 * 359.97438 * 9 2 1 11 11 S 1.52191 * 113.99910 * 268.96534 * 10 9 2 12 12 O 1.42100 * 104.27676 * 182.81942 * 11 10 9 13 13 O 1.42104 * 104.27601 * 310.67033 * 11 10 9 14 14 C 1.81400 * 104.45281 * 66.74507 * 11 10 9 15 15 C 1.52997 * 109.46897 * 172.56743 * 14 11 10 16 16 C 1.50697 * 115.55204 * 53.49875 * 15 14 11 17 17 H 1.08010 * 119.99850 * 271.87362 * 16 15 14 18 18 C 1.37875 * 120.00441 * 91.87949 * 16 15 14 19 19 N 1.31514 * 119.99665 * 3.93090 * 18 16 15 20 20 Si 1.86796 * 120.00292 * 183.93708 * 18 16 15 21 21 H 1.48499 * 109.47122 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47410 * 119.99632 * 20 18 16 23 23 H 1.48505 * 109.47224 * 239.99502 * 20 18 16 24 24 C 1.53002 * 117.50021 * 267.82117 * 15 14 11 25 25 C 1.53002 * 117.49652 * 199.16840 * 15 14 11 26 26 H 1.08998 * 109.46925 * 277.98205 * 1 2 3 27 27 H 1.08998 * 109.46988 * 37.98638 * 1 2 3 28 28 H 1.09004 * 109.47006 * 157.98128 * 1 2 3 29 29 H 1.08005 * 119.77243 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.82983 * 179.71671 * 4 3 2 31 31 H 1.08002 * 120.06369 * 180.25274 * 5 4 3 32 32 H 1.08006 * 120.00129 * 359.97438 * 7 6 5 33 33 H 1.09003 * 109.46583 * 292.56538 * 14 11 10 34 34 H 1.08994 * 109.46750 * 52.56929 * 14 11 10 35 35 H 0.97005 * 120.00268 * 185.01247 * 19 18 16 36 36 H 1.08998 * 117.49480 * 0.02562 * 24 15 14 37 37 H 1.09006 * 117.49856 * 145.01709 * 24 15 14 38 38 H 1.09006 * 117.49985 * 214.98072 * 25 15 14 39 39 H 1.08997 * 117.50151 * 359.97253 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1966 0.0000 4 6 3.5821 1.2089 -0.0059 5 6 4.2883 0.0266 -0.0001 6 6 3.6038 -1.1945 0.0057 7 6 4.3490 -2.4591 0.0124 8 8 3.7518 -3.5149 0.0180 9 6 2.1990 -1.2014 0.0058 10 8 1.5234 -2.3771 0.0120 11 16 1.2373 -2.9193 1.4050 12 8 0.5951 -4.1652 1.1711 13 8 2.4913 -2.8551 2.0704 14 6 0.0734 -1.7283 2.1241 15 6 -0.4380 -2.2605 3.4643 16 6 0.6262 -2.6514 4.4572 17 1 1.0312 -3.6526 4.4485 18 6 1.0826 -1.7311 5.3767 19 7 0.5357 -0.5366 5.4386 20 14 2.4779 -2.1806 6.5345 21 1 2.9158 -3.5736 6.2645 22 1 3.6174 -1.2527 6.3202 23 1 2.0094 -2.0729 7.9396 24 6 -1.7288 -3.0819 3.4521 25 6 -1.7321 -1.6589 4.0159 26 1 -0.3633 0.1427 1.0177 27 1 -0.3633 0.8099 -0.6325 28 1 -0.3633 -0.9528 -0.3853 29 1 1.6518 2.1293 0.0004 30 1 4.1110 2.1506 -0.0104 31 1 5.3682 0.0414 -0.0006 32 1 5.4290 -2.4496 0.0124 33 1 0.5790 -0.7754 2.2807 34 1 -0.7672 -1.5864 1.4450 35 1 0.9035 0.1350 6.0341 36 1 -2.2134 -3.2434 2.4893 37 1 -1.8084 -3.9049 4.1624 38 1 -1.8139 -1.5462 5.0970 39 1 -2.2189 -0.8836 3.4243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831005570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:57 Heat of formation + Delta-G solvation = -99.754145 kcal Electronic energy + Delta-G solvation = -27135.575749 eV Core-core repulsion = 23329.930854 eV Total energy + Delta-G solvation = -3805.644895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44934 -39.74029 -39.08263 -38.58930 -38.10865 -36.94283 -34.30642 -34.04819 -31.76877 -30.22034 -28.22728 -27.37596 -26.07847 -23.79754 -22.97280 -22.24743 -21.85724 -20.85755 -19.41867 -18.63337 -18.62870 -17.80059 -17.54086 -17.02661 -16.73796 -16.35110 -16.01790 -15.72341 -15.54516 -15.33659 -14.95942 -14.75612 -14.47813 -14.17879 -13.98295 -13.84420 -13.49358 -13.34777 -13.16119 -13.06770 -12.99863 -12.88835 -12.74306 -12.72485 -12.43422 -12.32392 -12.12279 -11.84442 -11.51845 -11.05261 -10.83961 -10.48146 -10.09145 -9.91879 -9.80257 -8.23169 -6.39783 -0.99144 -0.32992 0.15505 1.32888 1.35041 1.36145 1.46931 1.49367 2.37878 2.59654 2.77318 3.00828 3.14150 3.19359 3.36671 3.57066 3.68184 3.87045 3.97157 4.05728 4.17191 4.23491 4.25508 4.45234 4.54515 4.62902 4.66134 4.73649 4.80081 4.93524 4.96949 5.08452 5.11392 5.20688 5.24795 5.30691 5.38742 5.64296 5.66632 5.80236 6.16800 6.44108 6.65898 7.33887 8.83049 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.006524 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.182096 B = 4290.628807 C = 4502.100807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.071 4.071 4 C -0.106 4.106 5 C -0.052 4.052 6 C -0.200 4.200 7 C 0.376 3.624 8 O -0.503 6.503 9 C 0.069 3.931 10 O -0.668 6.668 11 S 2.605 3.395 12 O -0.987 6.987 13 O -0.972 6.972 14 C -0.573 4.573 15 C 0.004 3.996 16 C -0.542 4.542 17 H 0.038 0.962 18 C 0.054 3.946 19 N -0.881 5.881 20 Si 0.928 3.072 21 H -0.283 1.283 22 H -0.267 1.267 23 H -0.268 1.268 24 C -0.206 4.206 25 C -0.113 4.113 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.178 0.822 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.169 0.831 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.268 0.732 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 12.280 -12.845 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.089 4.089 4 C -0.124 4.124 5 C -0.069 4.069 6 C -0.203 4.203 7 C 0.237 3.763 8 O -0.378 6.378 9 C 0.027 3.973 10 O -0.626 6.626 11 S 2.706 3.294 12 O -0.986 6.986 13 O -0.970 6.970 14 C -0.704 4.704 15 C 0.002 3.998 16 C -0.580 4.580 17 H 0.056 0.944 18 C -0.150 4.150 19 N -0.516 5.516 20 Si 0.754 3.246 21 H -0.209 1.209 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.243 4.243 25 C -0.151 4.151 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.079 0.921 29 H 0.195 0.805 30 H 0.203 0.797 31 H 0.207 0.793 32 H 0.185 0.815 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.704 11.132 -12.973 18.021 hybrid contribution 0.074 -0.530 1.014 1.147 sum 5.778 10.603 -11.959 16.995 Atomic orbital electron populations 1.21564 0.89405 1.04851 1.05146 1.20423 0.98254 0.91561 1.01186 1.21723 0.95444 0.97035 0.94712 1.21894 0.93810 1.00049 0.96626 1.21903 1.02755 0.88910 0.93375 1.21625 0.92215 0.99563 1.06870 1.24852 0.97433 0.85603 0.68412 1.90509 1.75231 1.36025 1.36050 1.18863 0.90843 0.81111 1.06471 1.85637 1.76042 1.43993 1.56962 1.05161 0.76016 0.76182 0.72019 1.93434 1.78812 1.42607 1.83705 1.93447 1.41821 1.86932 1.74798 1.30596 1.15671 1.15765 1.08370 1.18364 0.88623 1.01885 0.90904 1.20663 1.22329 0.97907 1.17062 0.94406 1.25374 0.97368 0.95209 0.97037 1.70032 1.38972 1.04220 1.38415 0.85962 0.80671 0.78606 0.79383 1.20863 1.19190 1.19358 1.23290 1.03200 0.95605 1.02242 1.22418 0.99499 0.93469 0.99758 0.88743 0.86348 0.92057 0.80513 0.79665 0.79334 0.81499 0.84505 0.83803 0.92260 0.88648 0.90359 0.90834 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.72 71.24 0.55 -3.01 16 2 C -0.11 -2.94 4.98 -19.80 -0.10 -3.03 16 3 C -0.07 -1.24 9.71 22.32 0.22 -1.03 16 4 C -0.11 -1.45 10.02 22.23 0.22 -1.23 16 5 C -0.05 -0.89 9.79 22.57 0.22 -0.67 16 6 C -0.20 -5.87 5.39 -20.07 -0.11 -5.98 16 7 C 0.38 11.82 10.62 70.06 0.74 12.56 16 8 O -0.50 -22.07 13.98 26.53 0.37 -21.70 16 9 C 0.07 2.40 4.87 22.91 0.11 2.51 16 10 O -0.67 -28.33 7.63 -55.25 -0.42 -28.76 16 11 S 2.60 127.48 4.06 -56.49 -0.23 127.25 16 12 O -0.99 -54.70 18.09 -118.57 -2.15 -56.85 16 13 O -0.97 -52.00 13.68 -115.34 -1.58 -53.57 16 14 C -0.57 -24.63 3.49 71.98 0.25 -24.38 16 15 C 0.00 0.21 1.68 -52.93 -0.09 0.12 16 16 C -0.54 -31.08 7.61 25.60 0.19 -30.89 16 17 H 0.04 2.33 7.82 -2.91 -0.02 2.30 16 18 C 0.05 2.99 5.41 84.65 0.46 3.45 16 19 N -0.88 -47.26 12.08 21.45 0.26 -47.00 16 20 Si 0.93 44.76 29.54 68.60 2.03 46.79 16 21 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.21 -9.30 9.92 30.62 0.30 -8.99 16 25 C -0.11 -5.07 8.92 30.62 0.27 -4.79 16 26 H 0.09 2.32 5.48 -2.39 -0.01 2.30 16 27 H 0.12 1.77 8.13 -2.39 -0.02 1.75 16 28 H 0.06 1.56 6.62 -2.38 -0.02 1.54 16 29 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 31 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.14 5.68 6.23 -2.39 -0.01 5.67 16 34 H 0.14 5.02 5.82 -2.39 -0.01 5.00 16 35 H 0.27 13.49 8.32 -92.70 -0.77 12.72 16 36 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.08 3.60 8.14 -2.38 -0.02 3.58 16 38 H 0.07 3.61 7.78 -2.38 -0.02 3.59 16 39 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 Total: -1.00 -85.84 333.37 2.61 -83.22 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.08 Total: 15.98 kcal Atomic # 6 Polarization: -68.61 SS G_CDS: 3.25 Total: -65.36 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.26 Total: -47.00 kcal Atomic # 8 Polarization: -157.10 SS G_CDS: -3.77 Total: -160.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 127.48 SS G_CDS: -0.23 Total: 127.25 kcal Total: -85.84 2.61 -83.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831005570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.532 kcal (2) G-P(sol) polarization free energy of solvation -85.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds