Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48500 * 109.47217 * 239.99987 * 3 2 1 5 5 H 1.48499 * 109.47445 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46897 * 120.00320 * 3 2 1 7 7 C 1.38950 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.37089 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99824 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00412 * 180.02562 * 10 9 7 13 13 O 1.45195 * 109.47391 * 180.02562 * 12 10 9 14 14 C 1.34752 * 117.00045 * 179.97438 * 13 12 10 15 15 O 1.21506 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.47458 * 120.00022 * 179.97438 * 14 13 12 17 17 C 1.39783 * 120.06296 * 359.97438 * 16 14 13 18 18 C 1.37719 * 120.01540 * 179.76155 * 17 16 14 19 19 C 1.38999 * 120.13825 * 0.51167 * 18 17 16 20 20 N 1.39612 * 119.93489 * 179.76077 * 19 18 17 21 21 C 1.34778 * 119.99990 * 34.77008 * 20 19 18 22 22 O 1.21510 * 119.99836 * 355.49102 * 21 20 19 23 23 O 1.34649 * 119.99802 * 175.20468 * 21 20 19 24 24 C 1.39544 * 120.12561 * 359.48769 * 19 18 17 25 25 O 1.35995 * 120.01004 * 180.23197 * 24 19 18 26 26 C 1.38095 * 119.98534 * 0.25325 * 24 19 18 27 27 H 0.97000 * 120.00398 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00729 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46741 * 59.99610 * 12 10 9 30 30 H 1.09004 * 109.46697 * 300.00310 * 12 10 9 31 31 H 1.08001 * 119.99351 * 0.02562 * 17 16 14 32 32 H 1.08001 * 119.93008 * 180.27829 * 18 17 16 33 33 H 0.97004 * 119.99696 * 214.76304 * 20 19 18 34 34 H 0.96704 * 116.99550 * 180.27315 * 23 21 20 35 35 H 0.96693 * 113.99753 * 89.99934 * 25 24 19 36 36 H 1.07995 * 120.07291 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 8 2.1874 -5.9666 -0.0027 14 6 1.6724 -7.2118 -0.0027 15 8 0.4678 -7.3710 -0.0018 16 6 2.5707 -8.3812 -0.0037 17 6 3.9566 -8.1995 -0.0053 18 6 4.7947 -9.2923 -0.0013 19 6 4.2655 -10.5776 -0.0065 20 7 5.1190 -11.6825 -0.0075 21 6 6.2880 -11.6316 0.6614 22 8 6.6372 -10.5981 1.1966 23 8 7.0661 -12.7275 0.7415 24 6 2.8828 -10.7658 -0.0050 25 8 2.3676 -12.0244 -0.0053 26 6 2.0377 -9.6736 -0.0036 27 1 -0.4851 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6168 -4.9201 -0.8919 30 1 0.6175 -4.9213 0.8880 31 1 4.3704 -7.2019 -0.0052 32 1 5.8653 -9.1504 0.0021 33 1 4.8706 -12.4868 -0.4895 34 1 7.8933 -12.6435 1.2352 35 1 2.2197 -12.3890 0.8780 36 1 0.9673 -9.8176 -0.0028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = -210.525342 kcal Electronic energy + Delta-G solvation = -25775.564027 eV Core-core repulsion = 21418.822518 eV Total energy + Delta-G solvation = -4356.741509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48286 -40.45151 -39.58278 -38.12995 -37.19639 -36.58847 -36.06709 -35.37860 -33.99334 -31.38252 -30.75908 -30.17606 -28.26378 -25.27998 -24.37064 -23.19283 -22.45246 -21.00420 -19.75185 -19.56199 -18.94705 -18.06943 -18.05425 -17.40671 -17.25748 -16.64545 -16.37110 -16.30247 -15.80576 -15.45178 -15.14203 -14.55702 -14.21299 -14.10392 -14.05792 -14.02660 -13.51171 -12.97209 -12.87133 -12.37039 -12.19240 -12.07742 -11.95475 -11.61343 -11.55578 -11.18719 -11.10459 -10.74455 -10.48315 -10.45516 -10.42141 -10.27897 -9.58746 -9.19424 -8.67406 -8.51800 -8.07527 -6.49014 -3.91069 0.28926 0.90805 1.68668 2.09268 2.50177 2.62114 3.16381 3.23673 3.28312 3.37144 3.72791 3.75005 3.96883 4.11976 4.47443 4.55360 4.86307 4.92136 5.00249 5.05757 5.15931 5.38957 5.54679 5.70247 5.71597 5.74318 5.88945 6.02072 6.07380 6.11607 6.35561 6.56380 6.67899 7.12291 7.48527 7.73993 7.80220 7.95876 8.49289 9.07809 9.40064 9.89944 10.68105 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.002209 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.972608 B =12671.128994 C =13794.286549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.319 6.319 14 C 0.507 3.493 15 O -0.510 6.510 16 C -0.116 4.116 17 C -0.041 4.041 18 C -0.121 4.121 19 C 0.164 3.836 20 N -0.643 5.643 21 C 0.664 3.336 22 O -0.553 6.553 23 O -0.521 6.521 24 C 0.069 3.931 25 O -0.489 6.489 26 C -0.059 4.059 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.424 0.576 34 H 0.435 0.565 35 H 0.391 0.609 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.692 -26.088 0.935 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.234 6.234 14 C 0.351 3.649 15 O -0.400 6.400 16 C -0.118 4.118 17 C -0.060 4.060 18 C -0.141 4.141 19 C 0.069 3.931 20 N -0.296 5.296 21 C 0.417 3.583 22 O -0.440 6.440 23 O -0.332 6.332 24 C 0.022 3.978 25 O -0.299 6.299 26 C -0.079 4.079 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.262 0.738 34 H 0.296 0.704 35 H 0.247 0.753 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.950 -25.504 0.407 26.437 hybrid contribution -0.080 0.372 0.603 0.713 sum 6.869 -25.132 1.010 26.074 Atomic orbital electron populations 1.69605 1.05990 1.28589 1.49591 1.25314 0.95693 0.99871 0.96890 0.85852 0.78741 0.80066 0.79195 1.19752 1.20891 1.19757 1.19673 0.93454 0.81752 1.48280 0.87650 1.41691 1.09381 1.04069 1.63820 1.19300 0.88336 0.84042 0.86008 1.90561 1.13379 1.86776 1.55246 1.22788 0.90797 0.84337 1.03679 1.86589 1.40001 1.13797 1.82972 1.21001 0.87009 0.83774 0.73107 1.90833 1.15953 1.86988 1.46241 1.19018 0.93143 0.90809 1.08786 1.21628 0.91449 1.00581 0.92361 1.21292 1.02194 0.89523 1.01075 1.18044 0.87899 0.86673 1.00509 1.41660 1.17303 1.17948 1.52649 1.17712 0.80874 0.81685 0.78001 1.91122 1.72805 1.30554 1.49536 1.84163 1.37083 1.38199 1.73718 1.17748 0.88218 0.85126 1.06694 1.84874 1.84572 1.26583 1.33856 1.21290 1.01184 0.89552 0.95830 0.91577 0.77137 0.89350 0.89370 0.82655 0.82696 0.73831 0.70362 0.75334 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.93 5.29 -10.96 -0.06 -13.99 16 10 C 0.44 10.52 7.86 -10.98 -0.09 10.43 16 11 O -0.58 -15.85 16.08 -14.11 -0.23 -16.08 16 12 C 0.06 1.17 5.95 36.01 0.21 1.38 16 13 O -0.32 -5.93 8.99 -47.31 -0.43 -6.35 16 14 C 0.51 8.21 7.89 34.49 0.27 8.49 16 15 O -0.51 -8.94 16.13 -19.27 -0.31 -9.25 16 16 C -0.12 -1.52 5.87 -104.98 -0.62 -2.13 16 17 C -0.04 -0.51 9.60 -39.19 -0.38 -0.89 16 18 C -0.12 -1.34 8.67 -39.49 -0.34 -1.69 16 19 C 0.16 1.56 6.32 -83.55 -0.53 1.03 16 20 N -0.64 -4.70 5.17 -14.15 -0.07 -4.77 16 21 C 0.66 5.43 8.96 54.06 0.48 5.91 16 22 O -0.55 -6.44 14.53 -19.28 -0.28 -6.72 16 23 O -0.52 -2.51 13.48 -40.35 -0.54 -3.06 16 24 C 0.07 0.63 6.71 -39.15 -0.26 0.37 16 25 O -0.49 -3.33 13.05 -19.72 -0.26 -3.59 16 26 C -0.06 -0.65 9.52 -39.05 -0.37 -1.02 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.16 2.02 7.60 -52.49 -0.40 1.63 16 32 H 0.16 1.77 6.18 -52.49 -0.32 1.45 16 33 H 0.42 2.16 8.66 -40.82 -0.35 1.81 16 34 H 0.44 0.27 9.11 45.56 0.42 0.69 16 35 H 0.39 1.04 9.06 45.56 0.41 1.45 16 36 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -35.97 337.06 -4.58 -40.54 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -1.33 Total: 11.85 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -1.85 Total: 13.96 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.59 Total: -42.09 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -2.04 Total: -45.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.97 -4.58 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.982 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds