Wall clock time and date at job start Tue Mar 31 2020 13:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48500 * 109.47217 * 239.99987 * 3 2 1 5 5 H 1.48499 * 109.47445 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46897 * 120.00320 * 3 2 1 7 7 C 1.38950 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.37089 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99824 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00412 * 180.02562 * 10 9 7 13 13 O 1.45195 * 109.47391 * 180.02562 * 12 10 9 14 14 C 1.34752 * 117.00045 * 179.97438 * 13 12 10 15 15 O 1.21506 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.47458 * 120.00022 * 179.97438 * 14 13 12 17 17 C 1.39783 * 120.06296 * 359.97438 * 16 14 13 18 18 C 1.37719 * 120.01540 * 179.76155 * 17 16 14 19 19 C 1.38999 * 120.13825 * 0.51167 * 18 17 16 20 20 N 1.39612 * 119.93489 * 179.76077 * 19 18 17 21 21 C 1.34778 * 119.99990 * 34.77008 * 20 19 18 22 22 O 1.21510 * 119.99836 * 355.49102 * 21 20 19 23 23 O 1.34649 * 119.99802 * 175.20468 * 21 20 19 24 24 C 1.39544 * 120.12561 * 359.48769 * 19 18 17 25 25 O 1.35995 * 120.01004 * 180.23197 * 24 19 18 26 26 C 1.38095 * 119.98534 * 0.25325 * 24 19 18 27 27 H 0.97000 * 120.00398 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00729 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46741 * 59.99610 * 12 10 9 30 30 H 1.09004 * 109.46697 * 300.00310 * 12 10 9 31 31 H 1.08001 * 119.99351 * 0.02562 * 17 16 14 32 32 H 1.08001 * 119.93008 * 180.27829 * 18 17 16 33 33 H 0.97004 * 119.99696 * 214.76304 * 20 19 18 34 34 H 0.96704 * 116.99550 * 180.27315 * 23 21 20 35 35 H 0.96693 * 113.99753 * 89.99934 * 25 24 19 36 36 H 1.07995 * 120.07291 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 8 2.1874 -5.9666 -0.0027 14 6 1.6724 -7.2118 -0.0027 15 8 0.4678 -7.3710 -0.0018 16 6 2.5707 -8.3812 -0.0037 17 6 3.9566 -8.1995 -0.0053 18 6 4.7947 -9.2923 -0.0013 19 6 4.2655 -10.5776 -0.0065 20 7 5.1190 -11.6825 -0.0075 21 6 6.2880 -11.6316 0.6614 22 8 6.6372 -10.5981 1.1966 23 8 7.0661 -12.7275 0.7415 24 6 2.8828 -10.7658 -0.0050 25 8 2.3676 -12.0244 -0.0053 26 6 2.0377 -9.6736 -0.0036 27 1 -0.4851 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6168 -4.9201 -0.8919 30 1 0.6175 -4.9213 0.8880 31 1 4.3704 -7.2019 -0.0052 32 1 5.8653 -9.1504 0.0021 33 1 4.8706 -12.4868 -0.4895 34 1 7.8933 -12.6435 1.2352 35 1 2.2197 -12.3890 0.8780 36 1 0.9673 -9.8176 -0.0028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:27 Heat of formation + Delta-G solvation = -240.690699 kcal Electronic energy + Delta-G solvation = -25776.872095 eV Core-core repulsion = 21418.822518 eV Total energy + Delta-G solvation = -4358.049577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.23750 -41.62444 -40.48321 -39.93964 -37.83673 -37.59016 -37.14432 -36.14217 -36.02859 -33.41589 -31.65648 -31.12539 -29.77583 -26.79264 -25.72402 -24.03219 -23.29970 -22.00266 -21.43549 -20.37441 -20.06959 -19.89745 -18.75526 -18.40869 -18.11162 -17.80793 -17.71994 -17.33682 -17.13189 -16.54846 -16.36223 -15.98105 -15.78609 -15.68883 -14.99098 -14.84918 -14.69634 -14.22732 -14.10596 -13.64236 -13.58335 -13.54323 -12.97463 -12.93136 -12.72080 -12.48366 -12.25908 -12.12652 -12.00308 -11.88809 -11.80647 -11.56723 -11.40350 -10.51257 -10.11545 -10.03560 -9.47035 -8.51760 -6.02386 -0.64682 0.08376 1.08140 1.19672 1.28678 1.38113 1.44418 1.55752 1.64658 1.87611 2.29763 2.47092 2.93808 3.07720 3.13704 3.42087 3.56114 3.66928 3.96757 4.01489 4.10556 4.16315 4.22625 4.31615 4.62492 4.84633 4.93581 5.07413 5.12087 5.24248 5.37298 5.52940 5.69210 5.89125 6.11172 6.44509 6.56537 6.67279 7.03138 7.21211 7.40130 7.93712 8.64980 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.002209 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.972608 B =12671.128994 C =13794.286549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.071 3.929 13 O -0.337 6.337 14 C 0.509 3.491 15 O -0.526 6.526 16 C -0.133 4.133 17 C -0.048 4.048 18 C -0.125 4.125 19 C 0.173 3.827 20 N -0.631 5.631 21 C 0.668 3.332 22 O -0.590 6.590 23 O -0.507 6.507 24 C 0.091 3.909 25 O -0.485 6.485 26 C -0.056 4.056 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.437 0.563 34 H 0.453 0.547 35 H 0.414 0.586 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 -27.978 0.953 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.503 6.503 12 C -0.006 4.006 13 O -0.252 6.252 14 C 0.355 3.645 15 O -0.417 6.417 16 C -0.135 4.135 17 C -0.067 4.067 18 C -0.145 4.145 19 C 0.077 3.923 20 N -0.285 5.285 21 C 0.422 3.578 22 O -0.481 6.481 23 O -0.320 6.320 24 C 0.043 3.957 25 O -0.298 6.298 26 C -0.075 4.075 27 H 0.090 0.910 28 H 0.235 0.765 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.278 0.722 34 H 0.318 0.682 35 H 0.274 0.726 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.799 -27.466 0.436 28.299 hybrid contribution 0.009 0.744 0.610 0.962 sum 6.808 -26.722 1.047 27.596 Atomic orbital electron populations 1.69665 1.06924 1.29791 1.49101 1.26131 0.96605 1.02591 0.95674 0.84913 0.77737 0.76122 0.79127 1.19491 1.19377 1.19520 1.19679 0.92943 0.83370 1.50726 0.89767 1.41726 1.09579 1.04152 1.64051 1.20082 0.88087 0.85352 0.84142 1.90527 1.15416 1.87683 1.56706 1.22573 0.90102 0.82242 1.05644 1.86592 1.40413 1.14655 1.83563 1.21467 0.87338 0.83418 0.72245 1.90811 1.16598 1.86955 1.47337 1.18896 0.92764 0.90441 1.11372 1.21460 0.91481 1.00417 0.93348 1.21222 1.01758 0.90017 1.01537 1.18037 0.88492 0.86701 0.99030 1.41555 1.16837 1.17719 1.52411 1.17770 0.80960 0.81700 0.77347 1.91117 1.73663 1.32197 1.51083 1.84156 1.37780 1.36310 1.73709 1.17537 0.87650 0.85639 1.04883 1.84836 1.84158 1.24987 1.35833 1.21362 1.01736 0.88987 0.95408 0.90955 0.76516 0.87275 0.87299 0.84245 0.83188 0.72221 0.68211 0.72625 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.75 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 1.00 42.26 29.55 68.60 2.03 44.28 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 8 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.77 5.29 -306.98 -1.62 -30.40 16 10 C 0.44 21.50 7.86 87.66 0.69 22.19 16 11 O -0.62 -35.26 16.08 15.74 0.25 -35.00 16 12 C 0.07 2.72 5.95 71.24 0.42 3.15 16 13 O -0.34 -12.77 8.99 -50.23 -0.45 -13.22 16 14 C 0.51 16.58 7.89 70.25 0.55 17.14 16 15 O -0.53 -18.18 16.13 19.82 0.32 -17.86 16 16 C -0.13 -3.47 5.87 -20.10 -0.12 -3.59 16 17 C -0.05 -1.22 9.60 22.52 0.22 -1.01 16 18 C -0.13 -2.75 8.67 22.33 0.19 -2.56 16 19 C 0.17 3.00 6.32 38.40 0.24 3.24 16 20 N -0.63 -7.71 5.17 -429.09 -2.22 -9.93 16 21 C 0.67 9.63 8.96 129.79 1.16 10.79 16 22 O -0.59 -13.24 14.53 19.81 0.29 -12.95 16 23 O -0.51 -3.56 13.48 -55.58 -0.75 -4.31 16 24 C 0.09 1.43 6.71 22.55 0.15 1.59 16 25 O -0.49 -4.88 13.05 -93.49 -1.22 -6.10 16 26 C -0.06 -1.14 9.52 22.62 0.22 -0.92 16 27 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 29 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 31 H 0.14 3.93 7.60 -2.91 -0.02 3.91 16 32 H 0.15 3.48 6.18 -2.91 -0.02 3.46 16 33 H 0.44 3.07 8.66 -92.71 -0.80 2.26 16 34 H 0.45 -0.54 9.11 -74.05 -0.67 -1.22 16 35 H 0.41 0.54 9.06 -74.06 -0.67 -0.14 16 36 H 0.16 3.00 7.64 -2.91 -0.02 2.98 16 Total: -1.00 -78.14 337.06 0.27 -77.87 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -1.65 Total: 24.36 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: 5.01 Total: 31.72 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -3.56 Total: -88.79 kcal Atomic # 8 Polarization: -87.89 SS G_CDS: -1.56 Total: -89.45 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -78.14 0.27 -77.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.816 kcal (2) G-P(sol) polarization free energy of solvation -78.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds