Wall clock time and date at job start Tue Mar 31 2020 13:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 O 1.45200 * 109.47003 * 240.00087 * 2 1 3 13 13 C 1.34703 * 117.00062 * 89.99737 * 12 2 1 14 14 O 1.21472 * 120.00124 * 359.97438 * 13 12 2 15 15 C 1.47731 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.39633 * 120.14418 * 359.72447 * 15 13 12 17 17 C 1.37948 * 119.84039 * 179.74993 * 16 15 13 18 18 C 1.38367 * 120.15396 * 0.52441 * 17 16 15 19 19 S 1.76199 * 119.84851 * 179.72017 * 18 17 16 20 20 O 1.42096 * 104.27612 * 26.10170 * 19 18 17 21 21 O 1.42100 * 104.27659 * 153.95575 * 19 18 17 22 22 C 1.81401 * 104.45342 * 270.02687 * 19 18 17 23 23 C 1.52994 * 117.49868 * 253.62533 * 22 19 18 24 24 C 1.52991 * 117.50027 * 185.00150 * 22 19 18 25 25 C 1.38372 * 120.30000 * 359.75268 * 18 17 16 26 26 C 1.37938 * 120.15054 * 359.97133 * 25 18 17 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.07921 * 359.97438 * 16 15 13 32 32 H 1.08004 * 119.92247 * 180.27465 * 17 16 15 33 33 H 1.09001 * 115.54707 * 39.33099 * 22 19 18 34 34 H 1.09004 * 117.50129 * 359.97438 * 23 22 19 35 35 H 1.09001 * 117.50141 * 145.02187 * 23 22 19 36 36 H 1.08999 * 117.49700 * 214.98219 * 24 22 19 37 37 H 1.09001 * 117.50100 * 359.97438 * 24 22 19 38 38 H 1.07997 * 119.91704 * 179.97438 * 25 18 17 39 39 H 1.08003 * 120.07369 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 8 2.0140 -0.6845 -1.1856 13 6 2.2178 0.0667 -2.2850 14 8 1.9968 1.2607 -2.2544 15 6 2.7090 -0.5619 -3.5285 16 6 2.9685 -1.9334 -3.5658 17 6 3.4221 -2.5147 -4.7317 18 6 3.6303 -1.7401 -5.8592 19 16 4.2168 -2.4898 -7.3420 20 8 3.7839 -3.8399 -7.2471 21 8 3.7417 -1.6391 -8.3764 22 6 6.0237 -2.3902 -7.2156 23 6 6.7383 -1.3667 -8.1001 24 6 6.8430 -2.8592 -8.4195 25 6 3.3806 -0.3795 -5.8274 26 6 2.9214 0.2137 -4.6699 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9042 -0.5275 4.4376 31 1 2.8110 -2.5382 -2.6851 32 1 3.6190 -3.5761 -4.7633 33 1 6.4363 -2.5739 -6.2236 34 1 6.1229 -0.7534 -8.7583 35 1 7.6215 -0.8766 -7.6901 36 1 7.7948 -3.3512 -8.2196 37 1 6.2963 -3.2281 -9.2875 38 1 3.5456 0.2192 -6.7109 39 1 2.7265 1.2758 -4.6465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835159682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:23 Heat of formation + Delta-G solvation = -91.600619 kcal Electronic energy + Delta-G solvation = -24374.512117 eV Core-core repulsion = 20569.220786 eV Total energy + Delta-G solvation = -3805.291331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26409 -38.78057 -37.74705 -37.22225 -36.27922 -36.07840 -33.34586 -31.91978 -31.32775 -30.56058 -25.48734 -25.09124 -23.90229 -23.16728 -23.03683 -21.82324 -20.12151 -19.26627 -18.45996 -17.86310 -17.14507 -16.78089 -16.30191 -16.14037 -15.67125 -15.40652 -15.01665 -14.79209 -14.63066 -14.01938 -13.78925 -13.57910 -13.28074 -12.97127 -12.76388 -12.51319 -12.39175 -12.33712 -12.19518 -11.98612 -11.70515 -11.66323 -11.64564 -11.45841 -11.25662 -10.97618 -10.86406 -10.33563 -10.21802 -9.92063 -9.71901 -9.61004 -9.30264 -9.23036 -8.76464 -6.30190 -4.33430 -0.33134 0.20821 1.06901 2.36719 2.50992 2.79525 3.13218 3.16862 3.25883 3.27403 3.37790 3.62280 3.79364 4.01696 4.19693 4.22255 4.30941 4.55020 4.63589 4.92360 4.95595 5.00790 5.06124 5.06912 5.18272 5.25962 5.37656 5.38809 5.65582 5.79703 5.83563 6.05749 6.10041 6.20299 6.31303 6.48616 6.50888 6.89753 7.19653 7.38606 8.05781 8.41771 8.75304 9.26069 10.81733 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029204 B = 0.002570 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.555883 B =10890.531673 C =11112.675807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.192 3.808 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.879 3.121 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.332 6.332 13 C 0.491 3.509 14 O -0.508 6.508 15 C -0.057 4.057 16 C -0.082 4.082 17 C -0.037 4.037 18 C -0.638 4.638 19 S 2.528 3.472 20 O -0.930 6.930 21 O -0.933 6.933 22 C -0.667 4.667 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.035 4.035 26 C -0.083 4.083 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.270 0.730 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 -2.372 -23.676 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.138 3.862 3 H 0.066 0.934 4 C -0.565 4.565 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.187 1.187 12 O -0.248 6.248 13 C 0.335 3.665 14 O -0.399 6.399 15 C -0.058 4.058 16 C -0.101 4.101 17 C -0.056 4.056 18 C -0.725 4.725 19 S 2.708 3.292 20 O -0.927 6.927 21 O -0.930 6.930 22 C -0.776 4.776 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.054 4.054 26 C -0.102 4.102 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.182 0.818 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.166 0.834 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.097 -2.387 -24.024 25.464 hybrid contribution -0.349 1.208 1.405 1.885 sum 7.748 -1.179 -22.620 23.939 Atomic orbital electron populations 1.22540 0.98246 1.02062 0.99990 1.21018 0.90629 0.94507 0.80027 0.93439 1.20745 1.33668 1.14982 0.87126 0.89397 1.24726 0.95609 0.96750 0.95207 1.69831 1.44499 1.39886 0.98046 0.86969 0.80797 0.83557 0.77865 1.19895 1.21576 1.18707 1.86566 1.75468 1.42277 1.20445 1.21080 0.75305 0.85345 0.84799 1.90786 1.48323 1.16084 1.84688 1.19768 0.99162 0.94521 0.92344 1.21769 0.95395 0.93948 0.99001 1.20974 0.93887 1.00045 0.90721 1.30637 1.17157 1.04890 1.19799 1.04388 0.76114 0.74550 0.74193 1.93586 1.78755 1.34325 1.86077 1.93569 1.77425 1.67988 1.54060 1.32187 1.21866 1.17591 1.05912 1.22936 1.02251 0.92201 0.98937 1.22836 1.01346 0.98172 0.94197 1.20842 0.93977 0.92415 0.98145 1.21425 0.96567 1.01106 0.91064 0.92340 0.94343 0.91612 0.91951 0.82760 0.83309 0.81782 0.86107 0.86659 0.86463 0.87332 0.83387 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.03 37.16 0.34 -3.50 16 2 C 0.19 4.73 2.16 -27.88 -0.06 4.67 16 3 H 0.05 1.23 6.22 -51.93 -0.32 0.91 16 4 C -0.53 -14.77 9.48 -34.44 -0.33 -15.10 16 5 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 6 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 8 Si 0.88 21.27 24.37 -169.99 -4.14 17.13 16 9 H -0.27 -6.32 6.87 56.52 0.39 -5.94 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 12 O -0.33 -7.34 9.12 -40.50 -0.37 -7.71 16 13 C 0.49 9.66 7.87 34.61 0.27 9.94 16 14 O -0.51 -10.99 15.61 -19.24 -0.30 -11.29 16 15 C -0.06 -0.87 5.87 -104.98 -0.62 -1.49 16 16 C -0.08 -1.11 9.62 -39.17 -0.38 -1.48 16 17 C -0.04 -0.42 9.45 -39.64 -0.37 -0.80 16 18 C -0.64 -6.77 5.66 -39.48 -0.22 -7.00 16 19 S 2.53 23.12 5.52 -107.50 -0.59 22.53 16 20 O -0.93 -11.20 17.11 -57.54 -0.98 -12.19 16 21 O -0.93 -10.36 16.42 -57.54 -0.94 -11.30 16 22 C -0.67 -3.96 6.40 -26.74 -0.17 -4.14 16 23 C -0.13 -0.59 10.16 -26.74 -0.27 -0.87 16 24 C -0.13 -0.59 10.30 -26.74 -0.28 -0.87 16 25 C -0.03 -0.38 9.45 -39.64 -0.37 -0.75 16 26 C -0.08 -1.07 9.60 -39.17 -0.38 -1.45 16 27 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 32 H 0.15 1.35 7.56 -52.48 -0.40 0.95 16 33 H 0.16 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.12 0.54 7.68 -51.93 -0.40 0.14 16 35 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.15 1.20 7.56 -52.49 -0.40 0.81 16 39 H 0.15 1.78 7.65 -52.48 -0.40 1.38 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -35.23 345.86 -8.91 -44.15 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.63 Total: -0.45 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.94 Total: -20.64 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.77 Total: -25.42 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -2.60 Total: -42.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.13 kcal Atomic # 16 Polarization: 23.12 SS G_CDS: -0.59 Total: 22.53 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.23 -8.91 -44.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.455 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds