Wall clock time and date at job start Tue Mar 31 2020 13:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 O 1.45200 * 109.47003 * 240.00087 * 2 1 3 13 13 C 1.34703 * 117.00062 * 89.99737 * 12 2 1 14 14 O 1.21472 * 120.00124 * 359.97438 * 13 12 2 15 15 C 1.47731 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.39633 * 120.14418 * 359.72447 * 15 13 12 17 17 C 1.37948 * 119.84039 * 179.74993 * 16 15 13 18 18 C 1.38367 * 120.15396 * 0.52441 * 17 16 15 19 19 S 1.76199 * 119.84851 * 179.72017 * 18 17 16 20 20 O 1.42096 * 104.27612 * 26.10170 * 19 18 17 21 21 O 1.42100 * 104.27659 * 153.95575 * 19 18 17 22 22 C 1.81401 * 104.45342 * 270.02687 * 19 18 17 23 23 C 1.52994 * 117.49868 * 253.62533 * 22 19 18 24 24 C 1.52991 * 117.50027 * 185.00150 * 22 19 18 25 25 C 1.38372 * 120.30000 * 359.75268 * 18 17 16 26 26 C 1.37938 * 120.15054 * 359.97133 * 25 18 17 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.07921 * 359.97438 * 16 15 13 32 32 H 1.08004 * 119.92247 * 180.27465 * 17 16 15 33 33 H 1.09001 * 115.54707 * 39.33099 * 22 19 18 34 34 H 1.09004 * 117.50129 * 359.97438 * 23 22 19 35 35 H 1.09001 * 117.50141 * 145.02187 * 23 22 19 36 36 H 1.08999 * 117.49700 * 214.98219 * 24 22 19 37 37 H 1.09001 * 117.50100 * 359.97438 * 24 22 19 38 38 H 1.07997 * 119.91704 * 179.97438 * 25 18 17 39 39 H 1.08003 * 120.07369 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 8 2.0140 -0.6845 -1.1856 13 6 2.2178 0.0667 -2.2850 14 8 1.9968 1.2607 -2.2544 15 6 2.7090 -0.5619 -3.5285 16 6 2.9685 -1.9334 -3.5658 17 6 3.4221 -2.5147 -4.7317 18 6 3.6303 -1.7401 -5.8592 19 16 4.2168 -2.4898 -7.3420 20 8 3.7839 -3.8399 -7.2471 21 8 3.7417 -1.6391 -8.3764 22 6 6.0237 -2.3902 -7.2156 23 6 6.7383 -1.3667 -8.1001 24 6 6.8430 -2.8592 -8.4195 25 6 3.3806 -0.3795 -5.8274 26 6 2.9214 0.2137 -4.6699 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9042 -0.5275 4.4376 31 1 2.8110 -2.5382 -2.6851 32 1 3.6190 -3.5761 -4.7633 33 1 6.4363 -2.5739 -6.2236 34 1 6.1229 -0.7534 -8.7583 35 1 7.6215 -0.8766 -7.6901 36 1 7.7948 -3.3512 -8.2196 37 1 6.2963 -3.2281 -9.2875 38 1 3.5456 0.2192 -6.7109 39 1 2.7265 1.2758 -4.6465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:22 Heat of formation + Delta-G solvation = -115.366720 kcal Electronic energy + Delta-G solvation = -24375.542692 eV Core-core repulsion = 20569.220786 eV Total energy + Delta-G solvation = -3806.321907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72874 -39.98536 -38.39364 -37.79962 -37.77382 -37.08775 -35.37011 -33.24876 -32.39698 -32.22693 -27.42257 -26.41209 -24.51842 -24.04992 -23.51406 -23.30548 -21.73732 -20.04488 -19.64831 -19.02404 -18.63384 -18.11639 -17.70406 -17.20480 -16.92589 -16.63307 -16.13335 -15.84963 -15.71330 -15.20108 -14.78922 -14.71880 -14.50360 -14.42924 -14.24273 -14.17480 -13.68637 -13.50858 -13.30039 -13.15964 -12.90321 -12.52052 -12.44370 -12.30549 -12.26396 -12.08631 -12.01966 -11.84676 -11.76200 -11.55729 -11.41834 -11.29586 -10.88082 -10.64395 -10.26170 -8.48046 -6.57574 -1.10032 -0.80578 0.10391 1.18558 1.22116 1.29263 1.38496 1.63289 1.72724 2.16709 2.26261 2.37405 2.84364 2.85009 3.15258 3.43450 3.51059 3.65233 3.73630 3.82695 3.98378 4.08691 4.15921 4.21287 4.34241 4.41600 4.44376 4.64201 4.65573 4.75110 4.76910 4.82981 4.83142 4.94705 5.08889 5.09780 5.12137 5.27097 5.47610 5.53469 6.04948 6.46105 6.66456 7.06628 8.67724 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029204 B = 0.002570 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.555883 B =10890.531673 C =11112.675807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.193 3.807 3 H 0.034 0.966 4 C -0.541 4.541 5 H 0.049 0.951 6 C 0.032 3.968 7 N -0.928 5.928 8 Si 0.939 3.061 9 H -0.251 1.251 10 H -0.282 1.282 11 H -0.257 1.257 12 O -0.343 6.343 13 C 0.490 3.510 14 O -0.533 6.533 15 C -0.084 4.084 16 C -0.088 4.088 17 C -0.037 4.037 18 C -0.631 4.631 19 S 2.539 3.461 20 O -0.962 6.962 21 O -0.954 6.954 22 C -0.661 4.661 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.030 4.030 26 C -0.082 4.082 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.276 0.724 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.181 0.819 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.179 0.821 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -1.722 -25.979 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.139 3.861 3 H 0.052 0.948 4 C -0.579 4.579 5 H 0.068 0.932 6 C -0.168 4.168 7 N -0.566 5.566 8 Si 0.764 3.236 9 H -0.176 1.176 10 H -0.209 1.209 11 H -0.181 1.181 12 O -0.259 6.259 13 C 0.336 3.664 14 O -0.425 6.425 15 C -0.085 4.085 16 C -0.107 4.107 17 C -0.056 4.056 18 C -0.716 4.716 19 S 2.721 3.279 20 O -0.960 6.960 21 O -0.951 6.951 22 C -0.773 4.773 23 C -0.162 4.162 24 C -0.167 4.167 25 C -0.048 4.048 26 C -0.101 4.101 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.199 0.801 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.196 0.804 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.615 -1.745 -26.332 27.760 hybrid contribution -0.334 0.903 1.951 2.175 sum 8.281 -0.842 -24.381 25.763 Atomic orbital electron populations 1.22438 0.96129 1.02826 1.00894 1.20729 0.92173 0.93203 0.79971 0.94786 1.20905 1.33554 1.14165 0.89226 0.93227 1.25547 0.96836 0.99830 0.94604 1.69950 1.45982 1.41820 0.98810 0.86000 0.79920 0.79593 0.78095 1.17577 1.20869 1.18124 1.86551 1.76023 1.42588 1.20698 1.21792 0.74380 0.85156 0.85055 1.90752 1.49648 1.17015 1.85055 1.19626 1.02230 0.95520 0.91172 1.21782 0.95809 0.93255 0.99856 1.21206 0.93148 1.01204 0.90031 1.31041 1.15568 1.04905 1.20109 1.04060 0.77616 0.73286 0.72970 1.93548 1.80643 1.35638 1.86129 1.93539 1.79136 1.68136 1.54306 1.31892 1.17839 1.19889 1.07706 1.23189 1.02466 0.92408 0.98113 1.23161 1.01745 0.98404 0.93356 1.21178 0.92651 0.92764 0.98208 1.21561 0.96304 1.01330 0.90863 0.92309 0.92413 0.91000 0.91425 0.83335 0.81188 0.80100 0.85866 0.84822 0.84484 0.86736 0.80411 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.29 9.03 71.98 0.65 -6.64 16 2 C 0.19 9.70 2.16 29.85 0.06 9.76 16 3 H 0.03 1.80 6.22 -2.39 -0.01 1.78 16 4 C -0.54 -31.36 9.48 25.60 0.24 -31.11 16 5 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 6 C 0.03 1.83 5.45 84.66 0.46 2.30 16 7 N -0.93 -56.10 13.96 21.45 0.30 -55.81 16 8 Si 0.94 43.56 24.37 68.60 1.67 45.23 16 9 H -0.25 -10.73 6.87 99.48 0.68 -10.05 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.26 -11.63 6.53 99.48 0.65 -10.98 16 12 O -0.34 -15.64 9.12 -56.13 -0.51 -16.15 16 13 C 0.49 19.70 7.87 70.33 0.55 20.26 16 14 O -0.53 -23.33 15.61 19.93 0.31 -23.01 16 15 C -0.08 -2.61 5.87 -20.10 -0.12 -2.73 16 16 C -0.09 -2.38 9.62 22.54 0.22 -2.16 16 17 C -0.04 -0.80 9.45 22.23 0.21 -0.59 16 18 C -0.63 -12.23 5.66 22.33 0.13 -12.10 16 19 S 2.54 41.16 5.52 -56.49 -0.31 40.85 16 20 O -0.96 -21.80 17.11 -127.65 -2.18 -23.98 16 21 O -0.95 -19.20 16.42 -127.65 -2.10 -21.29 16 22 C -0.66 -5.73 6.40 30.59 0.20 -5.54 16 23 C -0.12 -0.72 10.16 30.59 0.31 -0.41 16 24 C -0.13 -0.74 10.30 30.59 0.31 -0.43 16 25 C -0.03 -0.58 9.45 22.23 0.21 -0.37 16 26 C -0.08 -2.04 9.60 22.53 0.22 -1.82 16 27 H 0.06 2.56 3.27 -2.39 -0.01 2.55 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 31 H 0.15 4.08 7.61 -2.91 -0.02 4.06 16 32 H 0.17 2.84 7.56 -2.91 -0.02 2.82 16 33 H 0.18 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.12 0.70 7.68 -2.38 -0.02 0.68 16 35 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.18 2.36 7.56 -2.91 -0.02 2.33 16 39 H 0.15 3.57 7.65 -2.91 -0.02 3.55 16 Total: -1.00 -77.69 345.86 1.83 -75.85 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.00 Total: 9.89 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.66 Total: -31.58 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.30 Total: -55.81 kcal Atomic # 8 Polarization: -79.96 SS G_CDS: -4.48 Total: -84.44 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.67 Total: 45.23 kcal Atomic # 16 Polarization: 41.16 SS G_CDS: -0.31 Total: 40.85 kcal Total: -77.69 1.83 -75.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.513 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds