Wall clock time and date at job start Tue Mar 31 2020 13:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34714 * 117.00197 * 270.00589 * 12 2 1 14 14 O 1.21466 * 119.99834 * 359.97438 * 13 12 2 15 15 C 1.47730 * 120.00196 * 180.02562 * 13 12 2 16 16 C 1.39628 * 120.14372 * 359.71558 * 15 13 12 17 17 C 1.37948 * 119.84394 * 179.74694 * 16 15 13 18 18 C 1.38368 * 120.14691 * 0.53626 * 17 16 15 19 19 S 1.76203 * 119.84706 * 179.72043 * 18 17 16 20 20 O 1.42102 * 104.27892 * 26.09277 * 19 18 17 21 21 O 1.42097 * 104.27728 * 153.94937 * 19 18 17 22 22 C 1.81403 * 104.45008 * 270.02146 * 19 18 17 23 23 C 1.53001 * 117.49876 * 253.62300 * 22 19 18 24 24 C 1.52998 * 117.49949 * 185.00019 * 22 19 18 25 25 C 1.38363 * 120.30393 * 359.73873 * 18 17 16 26 26 C 1.37942 * 120.15402 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.07998 * 120.07958 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.92481 * 180.27834 * 17 16 15 33 33 H 1.09006 * 115.54580 * 39.32693 * 22 19 18 34 34 H 1.09000 * 117.50007 * 0.02562 * 23 22 19 35 35 H 1.09001 * 117.49695 * 145.01449 * 23 22 19 36 36 H 1.08999 * 117.49660 * 214.97545 * 24 22 19 37 37 H 1.08994 * 117.49687 * 359.97438 * 24 22 19 38 38 H 1.08005 * 119.92507 * 179.97438 * 25 18 17 39 39 H 1.07997 * 120.08043 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0669 2.2851 14 8 1.9976 1.2610 2.2541 15 6 2.7101 -0.5614 3.5282 16 6 2.9595 -1.9347 3.5686 17 6 3.4241 -2.5141 4.7311 18 6 3.6324 -1.7394 5.8586 19 16 4.2190 -2.4890 7.3414 20 8 4.9283 -3.6372 6.8969 21 8 4.8841 -1.4367 8.0266 22 6 2.7135 -2.9750 8.2292 23 6 2.3174 -2.1478 9.4538 24 6 2.8790 -3.5596 9.6334 25 6 3.3817 -0.3791 5.8271 26 6 2.9225 0.2143 4.6695 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1611 -3.4845 31 1 2.7935 -2.5411 2.6905 32 1 3.6218 -3.5753 4.7625 33 1 1.9103 -3.3737 7.6094 34 1 2.9611 -1.3113 9.7258 35 1 1.2533 -2.0020 9.6399 36 1 2.1844 -4.3426 9.9376 37 1 3.8925 -3.6526 10.0235 38 1 3.5460 0.2197 6.7108 39 1 2.7277 1.2763 4.6461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835159683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:26 Heat of formation + Delta-G solvation = -101.426565 kcal Electronic energy + Delta-G solvation = -24309.183296 eV Core-core repulsion = 20503.465879 eV Total energy + Delta-G solvation = -3805.717416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.10347 -38.63442 -37.72907 -37.20159 -36.24731 -35.84543 -33.37638 -31.80958 -31.26295 -29.57707 -25.43830 -25.04462 -23.86938 -23.15558 -22.97051 -21.68986 -19.99736 -19.23104 -18.39728 -17.67366 -17.04432 -16.78548 -16.13291 -15.91675 -15.51299 -15.18920 -14.93163 -14.74197 -14.51464 -14.00844 -13.73678 -13.57527 -13.14654 -12.84890 -12.49197 -12.31440 -12.29861 -12.18249 -12.00241 -11.66359 -11.65003 -11.41359 -11.31669 -11.23008 -11.11913 -10.93656 -10.83263 -10.44666 -10.35129 -9.92854 -9.67880 -9.52723 -9.24743 -9.00257 -8.56089 -6.24973 -4.32389 -0.29913 0.28027 1.12532 2.39331 2.61899 2.82519 3.21130 3.25114 3.28942 3.41151 3.43942 3.70103 3.81729 4.03029 4.24360 4.27330 4.32130 4.60420 4.68687 4.93012 5.05692 5.08102 5.10231 5.12999 5.24940 5.34425 5.38387 5.45052 5.70904 5.86585 5.95255 6.21120 6.52973 6.56899 6.79689 6.80460 7.00907 7.49611 7.62511 7.81508 8.04059 8.45078 8.77195 9.33227 10.82515 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.002524 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.294587 B =11091.602830 C =11484.917914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.283 1.283 12 O -0.347 6.347 13 C 0.489 3.511 14 O -0.507 6.507 15 C -0.054 4.054 16 C -0.084 4.084 17 C -0.038 4.038 18 C -0.640 4.640 19 S 2.528 3.472 20 O -0.931 6.931 21 O -0.933 6.933 22 C -0.667 4.667 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.035 4.035 26 C -0.084 4.084 27 H 0.016 0.984 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.267 0.733 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -7.680 23.643 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.209 1.209 12 O -0.263 6.263 13 C 0.332 3.668 14 O -0.397 6.397 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.057 4.057 18 C -0.727 4.727 19 S 2.707 3.293 20 O -0.928 6.928 21 O -0.930 6.930 22 C -0.776 4.776 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.054 4.054 26 C -0.103 4.103 27 H 0.035 0.965 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.166 0.834 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.262 -7.326 23.644 24.856 hybrid contribution -0.744 -0.112 -1.558 1.730 sum 1.518 -7.438 22.086 23.354 Atomic orbital electron populations 1.22176 0.97335 1.00251 1.01542 1.20738 0.91518 0.94020 0.77372 0.93379 1.21002 1.32706 1.13640 0.88738 0.91195 1.24896 0.94838 0.95104 0.99120 1.69894 1.35868 1.22534 1.24316 0.86243 0.78579 0.79887 0.81259 1.20342 1.19541 1.20899 1.86547 1.75521 1.43183 1.21062 1.21000 0.75499 0.85394 0.84863 1.90786 1.48178 1.16084 1.84702 1.19862 0.98676 0.94433 0.92555 1.21743 0.95624 0.94064 0.98887 1.20955 0.93254 1.00232 0.91257 1.30594 1.18043 1.04787 1.19263 1.04381 0.75636 0.74651 0.74583 1.93584 1.67963 1.50994 1.80254 1.93568 1.69903 1.55466 1.74100 1.32198 1.23703 1.18247 1.03413 1.22935 1.04182 0.95182 0.94030 1.22834 1.04142 0.98328 0.91275 1.20840 0.93298 0.92452 0.98761 1.21440 0.96597 1.01135 0.91121 0.96484 0.88049 0.94298 0.92297 0.82909 0.83431 0.81842 0.86092 0.86686 0.86493 0.87332 0.83444 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.33 37.16 0.35 -3.52 16 2 C 0.22 5.70 2.56 -27.89 -0.07 5.63 16 3 H 0.05 1.40 7.16 -51.92 -0.37 1.03 16 4 C -0.52 -14.44 8.90 -34.44 -0.31 -14.75 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 O -0.35 -8.07 9.12 -40.53 -0.37 -8.44 16 13 C 0.49 10.23 7.87 34.61 0.27 10.50 16 14 O -0.51 -11.78 15.61 -19.24 -0.30 -12.08 16 15 C -0.05 -0.88 5.87 -104.98 -0.62 -1.49 16 16 C -0.08 -1.18 9.62 -39.17 -0.38 -1.56 16 17 C -0.04 -0.45 9.45 -39.64 -0.37 -0.82 16 18 C -0.64 -7.09 5.66 -39.49 -0.22 -7.31 16 19 S 2.53 23.99 5.52 -107.50 -0.59 23.40 16 20 O -0.93 -11.51 17.11 -57.54 -0.98 -12.50 16 21 O -0.93 -10.73 16.42 -57.54 -0.94 -11.68 16 22 C -0.67 -4.06 6.40 -26.73 -0.17 -4.23 16 23 C -0.13 -0.61 10.17 -26.73 -0.27 -0.88 16 24 C -0.13 -0.61 10.30 -26.73 -0.28 -0.88 16 25 C -0.03 -0.39 9.45 -39.64 -0.37 -0.77 16 26 C -0.08 -1.15 9.60 -39.17 -0.38 -1.53 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.15 2.08 7.61 -52.49 -0.40 1.68 16 32 H 0.15 1.38 7.56 -52.49 -0.40 0.99 16 33 H 0.16 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 0.56 7.68 -51.93 -0.40 0.16 16 35 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.15 1.28 7.56 -52.48 -0.40 0.88 16 39 H 0.15 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -34.47 352.68 -9.95 -44.42 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.76 Total: 0.04 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.91 Total: -20.01 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -2.60 Total: -44.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 23.99 SS G_CDS: -0.59 Total: 23.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.47 -9.95 -44.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.010 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds