Wall clock time and date at job start Tue Mar 31 2020 13:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34714 * 117.00197 * 270.00589 * 12 2 1 14 14 O 1.21466 * 119.99834 * 359.97438 * 13 12 2 15 15 C 1.47730 * 120.00196 * 180.02562 * 13 12 2 16 16 C 1.39628 * 120.14372 * 359.71558 * 15 13 12 17 17 C 1.37948 * 119.84394 * 179.74694 * 16 15 13 18 18 C 1.38368 * 120.14691 * 0.53626 * 17 16 15 19 19 S 1.76203 * 119.84706 * 179.72043 * 18 17 16 20 20 O 1.42102 * 104.27892 * 26.09277 * 19 18 17 21 21 O 1.42097 * 104.27728 * 153.94937 * 19 18 17 22 22 C 1.81403 * 104.45008 * 270.02146 * 19 18 17 23 23 C 1.53001 * 117.49876 * 253.62300 * 22 19 18 24 24 C 1.52998 * 117.49949 * 185.00019 * 22 19 18 25 25 C 1.38363 * 120.30393 * 359.73873 * 18 17 16 26 26 C 1.37942 * 120.15402 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.07998 * 120.07958 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.92481 * 180.27834 * 17 16 15 33 33 H 1.09006 * 115.54580 * 39.32693 * 22 19 18 34 34 H 1.09000 * 117.50007 * 0.02562 * 23 22 19 35 35 H 1.09001 * 117.49695 * 145.01449 * 23 22 19 36 36 H 1.08999 * 117.49660 * 214.97545 * 24 22 19 37 37 H 1.08994 * 117.49687 * 359.97438 * 24 22 19 38 38 H 1.08005 * 119.92507 * 179.97438 * 25 18 17 39 39 H 1.07997 * 120.08043 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0669 2.2851 14 8 1.9976 1.2610 2.2541 15 6 2.7101 -0.5614 3.5282 16 6 2.9595 -1.9347 3.5686 17 6 3.4241 -2.5141 4.7311 18 6 3.6324 -1.7394 5.8586 19 16 4.2190 -2.4890 7.3414 20 8 4.9283 -3.6372 6.8969 21 8 4.8841 -1.4367 8.0266 22 6 2.7135 -2.9750 8.2292 23 6 2.3174 -2.1478 9.4538 24 6 2.8790 -3.5596 9.6334 25 6 3.3817 -0.3791 5.8271 26 6 2.9225 0.2143 4.6695 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1611 -3.4845 31 1 2.7935 -2.5411 2.6905 32 1 3.6218 -3.5753 4.7625 33 1 1.9103 -3.3737 7.6094 34 1 2.9611 -1.3113 9.7258 35 1 1.2533 -2.0020 9.6399 36 1 2.1844 -4.3426 9.9376 37 1 3.8925 -3.6526 10.0235 38 1 3.5460 0.2197 6.7108 39 1 2.7277 1.2763 4.6461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:25 Heat of formation + Delta-G solvation = -123.156188 kcal Electronic energy + Delta-G solvation = -24310.125563 eV Core-core repulsion = 20503.465879 eV Total energy + Delta-G solvation = -3806.659683 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63797 -39.93584 -38.39139 -37.77514 -37.68435 -37.08483 -35.40658 -33.03540 -32.29873 -31.54457 -27.51382 -26.34382 -24.50134 -24.03033 -23.50049 -23.27973 -21.69244 -20.04089 -19.48818 -18.91288 -18.63821 -17.92562 -17.56892 -17.03969 -16.88027 -16.58363 -16.11478 -15.84795 -15.69640 -15.12620 -14.70766 -14.54384 -14.43307 -14.36488 -14.02471 -13.84565 -13.29949 -13.25871 -13.16266 -13.05062 -12.87186 -12.51770 -12.45999 -12.40194 -12.27462 -12.18168 -12.07898 -11.99094 -11.69708 -11.63515 -11.41423 -11.05897 -10.67088 -10.60940 -10.25704 -8.32761 -6.49938 -1.08980 -0.79424 0.10804 1.23880 1.40300 1.42381 1.53497 1.69320 1.79345 2.27142 2.36750 2.38961 2.85482 2.98341 3.15437 3.47212 3.56210 3.69213 3.74350 3.84411 3.98921 4.09400 4.23317 4.41667 4.44656 4.65922 4.72235 4.73318 4.75263 4.76982 4.82781 4.83575 4.95107 5.05617 5.09976 5.13548 5.42743 5.54116 5.55391 5.81554 5.97189 6.52272 6.77171 7.21195 8.75148 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.002524 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.294587 B =11091.602830 C =11484.917914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.009 0.991 4 C -0.550 4.550 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.273 1.273 10 H -0.261 1.261 11 H -0.274 1.274 12 O -0.352 6.352 13 C 0.487 3.513 14 O -0.540 6.540 15 C -0.083 4.083 16 C -0.087 4.087 17 C -0.036 4.036 18 C -0.632 4.632 19 S 2.538 3.462 20 O -0.962 6.962 21 O -0.955 6.955 22 C -0.659 4.659 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.029 4.029 26 C -0.085 4.085 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.272 0.728 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.178 0.822 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -9.599 25.597 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.027 0.973 4 C -0.587 4.587 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.186 1.186 11 H -0.199 1.199 12 O -0.268 6.268 13 C 0.332 3.668 14 O -0.433 6.433 15 C -0.085 4.085 16 C -0.106 4.106 17 C -0.054 4.054 18 C -0.717 4.717 19 S 2.720 3.280 20 O -0.959 6.959 21 O -0.953 6.953 22 C -0.772 4.772 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.048 4.048 26 C -0.104 4.104 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.191 0.809 33 H 0.201 0.799 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.132 0.868 38 H 0.195 0.805 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.276 -9.227 25.576 27.284 hybrid contribution -0.726 0.473 -1.934 2.119 sum 1.550 -8.754 23.642 25.258 Atomic orbital electron populations 1.21996 0.96403 1.00650 1.00978 1.20455 0.92266 0.92151 0.78704 0.97336 1.21277 1.33603 1.14065 0.89754 0.91261 1.25843 0.94639 0.95680 1.02159 1.70011 1.36398 1.23620 1.25352 0.85160 0.78097 0.78965 0.77064 1.19859 1.18555 1.19915 1.86527 1.75956 1.43129 1.21148 1.21844 0.74401 0.85165 0.85352 1.90752 1.49831 1.17462 1.85208 1.19667 1.02061 0.95655 0.91069 1.21782 0.95807 0.93076 0.99921 1.21223 0.92287 1.01550 0.90368 1.31045 1.15778 1.04781 1.20108 1.04093 0.76569 0.73567 0.73796 1.93548 1.70031 1.51495 1.80831 1.93539 1.71646 1.56232 1.73858 1.31883 1.21384 1.20041 1.03862 1.23193 1.05522 0.95341 0.92220 1.23167 1.05158 0.98994 0.89275 1.21154 0.92032 0.92898 0.98679 1.21545 0.96597 1.01189 0.91104 0.95722 0.89829 0.93256 0.91878 0.83078 0.80920 0.79923 0.86001 0.84735 0.84347 0.86801 0.80511 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.32 9.33 71.98 0.67 -6.65 16 2 C 0.22 11.99 2.56 29.85 0.08 12.06 16 3 H 0.01 0.55 7.16 -2.38 -0.02 0.53 16 4 C -0.55 -31.12 8.90 25.60 0.23 -30.89 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -52.39 11.32 21.45 0.24 -52.15 16 8 Si 0.98 42.67 29.54 68.60 2.03 44.70 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 O -0.35 -17.06 9.12 -56.24 -0.51 -17.57 16 13 C 0.49 21.33 7.87 70.33 0.55 21.88 16 14 O -0.54 -26.52 15.61 19.95 0.31 -26.21 16 15 C -0.08 -2.77 5.87 -20.10 -0.12 -2.88 16 16 C -0.09 -2.42 9.62 22.54 0.22 -2.21 16 17 C -0.04 -0.78 9.45 22.23 0.21 -0.57 16 18 C -0.63 -12.77 5.66 22.33 0.13 -12.64 16 19 S 2.54 42.39 5.52 -56.49 -0.31 42.08 16 20 O -0.96 -22.07 17.11 -127.65 -2.18 -24.25 16 21 O -0.96 -20.05 16.42 -127.65 -2.10 -22.15 16 22 C -0.66 -5.67 6.40 30.59 0.20 -5.48 16 23 C -0.12 -0.74 10.17 30.59 0.31 -0.43 16 24 C -0.13 -0.72 10.30 30.59 0.31 -0.41 16 25 C -0.03 -0.61 9.45 22.23 0.21 -0.40 16 26 C -0.09 -2.33 9.60 22.53 0.22 -2.12 16 27 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 4.59 6.07 -2.39 -0.01 4.58 16 29 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.15 4.16 7.61 -2.91 -0.02 4.14 16 32 H 0.17 2.85 7.56 -2.91 -0.02 2.83 16 33 H 0.18 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.12 0.74 7.68 -2.39 -0.02 0.72 16 35 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.18 2.62 7.56 -2.91 -0.02 2.60 16 39 H 0.15 3.93 7.65 -2.91 -0.02 3.90 16 Total: -1.00 -76.59 352.68 2.21 -74.38 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.07 Total: 10.53 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 3.66 Total: -29.36 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.24 Total: -52.15 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -4.48 Total: -90.18 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 42.39 SS G_CDS: -0.31 Total: 42.08 kcal Total: -76.59 2.21 -74.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.773 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds