Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99527 * 2 1 4 4 H 1.48494 * 109.46991 * 269.99081 * 3 2 1 5 5 H 1.48498 * 109.47479 * 29.99601 * 3 2 1 6 6 H 1.48512 * 109.47012 * 149.99681 * 3 2 1 7 7 C 1.37868 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47749 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47597 * 179.97438 * 10 9 7 12 12 C 1.34711 * 117.00357 * 179.97438 * 11 10 9 13 13 O 1.21469 * 119.99804 * 0.02562 * 12 11 10 14 14 C 1.47725 * 120.00114 * 180.02562 * 12 11 10 15 15 C 1.39629 * 120.14854 * 180.02562 * 14 12 11 16 16 C 1.37940 * 119.84682 * 180.02562 * 15 14 12 17 17 C 1.38367 * 120.15194 * 359.97438 * 16 15 14 18 18 S 1.76200 * 119.85058 * 180.02562 * 17 16 15 19 19 O 1.42104 * 104.27401 * 333.92691 * 18 17 16 20 20 O 1.42097 * 104.27908 * 206.06945 * 18 17 16 21 21 C 1.81400 * 104.45221 * 89.99755 * 18 17 16 22 22 C 1.53000 * 117.50197 * 180.02562 * 21 18 17 23 23 C 1.52997 * 117.50001 * 111.37495 * 21 18 17 24 24 C 1.38368 * 120.29970 * 0.27262 * 17 16 15 25 25 C 1.37944 * 120.15400 * 359.45670 * 24 17 16 26 26 H 0.97002 * 120.00259 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47341 * 59.99339 * 9 7 2 28 28 H 1.09008 * 109.46647 * 299.99767 * 9 7 2 29 29 H 1.09008 * 109.47069 * 59.99437 * 10 9 7 30 30 H 1.08999 * 109.46681 * 300.00235 * 10 9 7 31 31 H 1.07998 * 120.07721 * 359.97438 * 15 14 12 32 32 H 1.07997 * 119.92353 * 180.02562 * 16 15 14 33 33 H 1.09002 * 115.55860 * 325.68827 * 21 18 17 34 34 H 1.08990 * 117.49990 * 145.01827 * 22 21 18 35 35 H 1.09004 * 117.49237 * 359.97438 * 22 21 18 36 36 H 1.08999 * 117.49685 * 0.02562 * 23 21 18 37 37 H 1.08999 * 117.52022 * 214.97025 * 23 21 18 38 38 H 1.08003 * 119.92183 * 179.72825 * 24 17 16 39 39 H 1.07998 * 120.08152 * 180.27495 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9195 0.0011 12 6 2.2532 -6.0493 0.0007 13 8 3.4662 -5.9857 0.0003 14 6 1.5825 -7.3655 0.0007 15 6 2.3400 -8.5385 0.0008 16 6 1.7073 -9.7643 0.0002 17 6 0.3253 -9.8331 0.0002 18 16 -0.4746 -11.4031 0.0002 19 8 0.4686 -12.2768 -0.6051 20 8 -1.7358 -11.1538 -0.6051 21 6 -0.6801 -11.8064 1.7568 22 6 -1.3562 -13.1348 2.1022 23 6 -2.1036 -11.8166 2.3174 24 6 -0.4313 -8.6746 -0.0051 25 6 0.1883 -7.4422 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.8721 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8894 31 1 3.4187 -8.4862 0.0004 32 1 2.2919 -10.6723 0.0007 33 1 0.1176 -11.4618 2.4149 34 1 -1.0036 -13.6636 2.9876 35 1 -1.6779 -13.7661 1.2739 36 1 -2.9167 -11.5813 1.6306 37 1 -2.2429 -11.4789 3.3444 38 1 -1.5096 -8.7355 -0.0095 39 1 -0.4034 -6.5388 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835265090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = -106.350467 kcal Electronic energy + Delta-G solvation = -23725.634596 eV Core-core repulsion = 19919.703663 eV Total energy + Delta-G solvation = -3805.930933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44429 -38.91167 -37.77334 -37.30834 -36.34580 -36.24073 -33.43626 -32.07117 -31.43919 -30.24760 -25.81376 -24.55528 -23.85132 -23.23213 -23.07596 -21.35378 -20.73392 -19.34705 -18.56087 -17.88222 -17.26657 -16.65615 -16.33216 -16.09471 -15.99449 -15.64653 -15.02134 -14.89348 -14.58282 -14.09028 -13.90211 -13.76327 -13.69886 -12.99351 -12.74996 -12.58423 -12.41297 -12.39006 -12.23705 -11.72702 -11.70849 -11.60288 -11.36802 -11.33098 -11.12573 -10.94770 -10.83397 -10.77362 -10.43623 -9.81719 -9.72116 -9.68244 -9.41247 -9.36830 -8.49590 -6.15579 -4.20323 -0.40918 0.08251 0.95768 2.28965 2.35906 2.69986 2.89718 3.25350 3.26024 3.31671 3.35563 3.51266 3.74175 3.95136 4.15798 4.25003 4.33883 4.44758 4.53643 4.79296 4.88436 4.94255 5.00595 5.07165 5.20428 5.21208 5.27281 5.33786 5.55588 5.68460 5.72168 5.95871 5.98911 5.99783 6.38903 6.53452 6.76528 7.47188 7.54255 7.78746 7.99066 8.17156 8.84973 9.44476 10.95866 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.002143 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.343804 B =13059.926452 C =13594.842876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.495 3.505 13 O -0.504 6.504 14 C -0.060 4.060 15 C -0.081 4.081 16 C -0.038 4.038 17 C -0.636 4.636 18 S 2.527 3.473 19 O -0.931 6.931 20 O -0.930 6.930 21 C -0.668 4.668 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.033 4.033 25 C -0.082 4.082 26 H 0.264 0.736 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.151 0.849 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -27.102 5.134 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.265 6.265 12 C 0.338 3.662 13 O -0.394 6.394 14 C -0.062 4.062 15 C -0.100 4.100 16 C -0.057 4.057 17 C -0.723 4.723 18 S 2.706 3.294 19 O -0.928 6.928 20 O -0.927 6.927 21 C -0.776 4.776 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.052 4.052 25 C -0.101 4.101 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.889 -27.358 4.420 27.985 hybrid contribution 1.144 1.769 0.650 2.205 sum -2.745 -25.589 5.070 26.231 Atomic orbital electron populations 1.69967 1.06097 1.27083 1.49621 1.24982 0.94936 0.99431 0.94788 0.86457 0.79745 0.82734 0.78287 1.20439 1.21016 1.19714 1.20956 0.93195 0.90026 1.52411 0.92213 1.19186 0.94169 0.88912 0.98973 1.23757 0.96528 0.78203 1.01240 1.86575 1.41954 1.15629 1.82298 1.21082 0.85745 0.85638 0.73700 1.90816 1.14908 1.88318 1.45400 1.19704 0.94298 0.91306 1.00864 1.21423 1.01310 0.90575 0.96691 1.20883 0.92269 0.98770 0.93742 1.30682 1.04979 1.20589 1.16064 1.04456 0.74562 0.74240 0.76166 1.93584 1.62534 1.64199 1.72501 1.93583 1.42185 1.84605 1.72349 1.32181 1.06984 1.14014 1.24470 1.22854 1.00155 0.88838 1.04717 1.22970 0.89737 0.99571 1.03996 1.20975 1.00591 0.90738 0.92925 1.21768 0.93568 0.99176 0.95602 0.92644 0.95250 0.95262 0.92018 0.91992 0.83402 0.83278 0.81875 0.86441 0.87302 0.85989 0.86569 0.83162 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.63 5.41 37.16 0.20 1.83 16 11 O -0.35 -6.75 9.47 -40.52 -0.38 -7.14 16 12 C 0.49 8.64 7.90 34.61 0.27 8.91 16 13 O -0.50 -9.80 16.14 -19.24 -0.31 -10.11 16 14 C -0.06 -0.84 5.87 -104.98 -0.62 -1.45 16 15 C -0.08 -0.95 9.60 -39.17 -0.38 -1.33 16 16 C -0.04 -0.37 9.45 -39.64 -0.37 -0.75 16 17 C -0.64 -6.22 5.67 -39.49 -0.22 -6.44 16 18 S 2.53 21.67 5.52 -107.50 -0.59 21.08 16 19 O -0.93 -10.49 17.11 -57.54 -0.98 -11.48 16 20 O -0.93 -10.09 16.39 -57.54 -0.94 -11.03 16 21 C -0.67 -3.56 6.40 -26.73 -0.17 -3.73 16 22 C -0.13 -0.53 10.30 -26.70 -0.28 -0.80 16 23 C -0.12 -0.55 10.17 -26.71 -0.27 -0.82 16 24 C -0.03 -0.34 9.45 -39.64 -0.37 -0.72 16 25 C -0.08 -0.99 9.62 -39.17 -0.38 -1.37 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.15 1.60 7.65 -52.49 -0.40 1.20 16 32 H 0.15 1.12 7.56 -52.49 -0.40 0.73 16 33 H 0.16 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.12 0.52 7.66 -51.93 -0.40 0.12 16 37 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.15 1.20 7.55 -52.48 -0.40 0.80 16 39 H 0.15 1.79 7.61 -52.49 -0.40 1.39 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -35.06 357.74 -10.17 -45.23 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.91 Total: -3.34 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -3.15 Total: -19.50 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.74 Total: -25.25 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -2.62 Total: -39.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 21.67 SS G_CDS: -0.59 Total: 21.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.06 -10.17 -45.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.125 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds