Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99527 * 2 1 4 4 H 1.48494 * 109.46991 * 269.99081 * 3 2 1 5 5 H 1.48498 * 109.47479 * 29.99601 * 3 2 1 6 6 H 1.48512 * 109.47012 * 149.99681 * 3 2 1 7 7 C 1.37868 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47749 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47597 * 179.97438 * 10 9 7 12 12 C 1.34711 * 117.00357 * 179.97438 * 11 10 9 13 13 O 1.21469 * 119.99804 * 0.02562 * 12 11 10 14 14 C 1.47725 * 120.00114 * 180.02562 * 12 11 10 15 15 C 1.39629 * 120.14854 * 180.02562 * 14 12 11 16 16 C 1.37940 * 119.84682 * 180.02562 * 15 14 12 17 17 C 1.38367 * 120.15194 * 359.97438 * 16 15 14 18 18 S 1.76200 * 119.85058 * 180.02562 * 17 16 15 19 19 O 1.42104 * 104.27401 * 333.92691 * 18 17 16 20 20 O 1.42097 * 104.27908 * 206.06945 * 18 17 16 21 21 C 1.81400 * 104.45221 * 89.99755 * 18 17 16 22 22 C 1.53000 * 117.50197 * 180.02562 * 21 18 17 23 23 C 1.52997 * 117.50001 * 111.37495 * 21 18 17 24 24 C 1.38368 * 120.29970 * 0.27262 * 17 16 15 25 25 C 1.37944 * 120.15400 * 359.45670 * 24 17 16 26 26 H 0.97002 * 120.00259 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47341 * 59.99339 * 9 7 2 28 28 H 1.09008 * 109.46647 * 299.99767 * 9 7 2 29 29 H 1.09008 * 109.47069 * 59.99437 * 10 9 7 30 30 H 1.08999 * 109.46681 * 300.00235 * 10 9 7 31 31 H 1.07998 * 120.07721 * 359.97438 * 15 14 12 32 32 H 1.07997 * 119.92353 * 180.02562 * 16 15 14 33 33 H 1.09002 * 115.55860 * 325.68827 * 21 18 17 34 34 H 1.08990 * 117.49990 * 145.01827 * 22 21 18 35 35 H 1.09004 * 117.49237 * 359.97438 * 22 21 18 36 36 H 1.08999 * 117.49685 * 0.02562 * 23 21 18 37 37 H 1.08999 * 117.52022 * 214.97025 * 23 21 18 38 38 H 1.08003 * 119.92183 * 179.72825 * 24 17 16 39 39 H 1.07998 * 120.08152 * 180.27495 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9195 0.0011 12 6 2.2532 -6.0493 0.0007 13 8 3.4662 -5.9857 0.0003 14 6 1.5825 -7.3655 0.0007 15 6 2.3400 -8.5385 0.0008 16 6 1.7073 -9.7643 0.0002 17 6 0.3253 -9.8331 0.0002 18 16 -0.4746 -11.4031 0.0002 19 8 0.4686 -12.2768 -0.6051 20 8 -1.7358 -11.1538 -0.6051 21 6 -0.6801 -11.8064 1.7568 22 6 -1.3562 -13.1348 2.1022 23 6 -2.1036 -11.8166 2.3174 24 6 -0.4313 -8.6746 -0.0051 25 6 0.1883 -7.4422 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.8721 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8894 31 1 3.4187 -8.4862 0.0004 32 1 2.2919 -10.6723 0.0007 33 1 0.1176 -11.4618 2.4149 34 1 -1.0036 -13.6636 2.9876 35 1 -1.6779 -13.7661 1.2739 36 1 -2.9167 -11.5813 1.6306 37 1 -2.2429 -11.4789 3.3444 38 1 -1.5096 -8.7355 -0.0095 39 1 -0.4034 -6.5388 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835265090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = -128.201540 kcal Electronic energy + Delta-G solvation = -23726.582130 eV Core-core repulsion = 19919.703663 eV Total energy + Delta-G solvation = -3806.878466 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77361 -39.99226 -38.38811 -37.81699 -37.80169 -37.10535 -35.49372 -33.18272 -32.34978 -32.09985 -27.46659 -25.90503 -24.43383 -24.05032 -23.46058 -23.06920 -22.18276 -20.06541 -19.51184 -19.02285 -18.38819 -18.03239 -17.67951 -17.64241 -16.91833 -16.55690 -16.17279 -15.88789 -15.76400 -15.27965 -14.99950 -14.73300 -14.51716 -14.40353 -14.11781 -14.06421 -13.32585 -13.20817 -13.18278 -13.09758 -12.66006 -12.62896 -12.53469 -12.44191 -12.29591 -12.09505 -12.06612 -11.92832 -11.62305 -11.56904 -11.47212 -11.40157 -10.68042 -10.62738 -10.28071 -8.29260 -6.42498 -1.12699 -0.83890 0.08460 1.11960 1.38697 1.41780 1.48273 1.55346 1.70724 2.22752 2.33401 2.37959 2.82833 3.05409 3.14557 3.39112 3.48085 3.63088 3.71819 3.80546 3.96885 4.06642 4.16632 4.17261 4.19701 4.40032 4.62266 4.64597 4.73069 4.75638 4.76560 4.81561 4.93758 5.04187 5.08303 5.16616 5.41745 5.42817 5.51237 5.69712 6.03245 6.49321 6.70891 7.27390 8.83272 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.002143 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.343804 B =13059.926452 C =13594.842876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.355 6.355 12 C 0.496 3.504 13 O -0.529 6.529 14 C -0.085 4.085 15 C -0.081 4.081 16 C -0.035 4.035 17 C -0.631 4.631 18 S 2.535 3.465 19 O -0.960 6.960 20 O -0.957 6.957 21 C -0.659 4.659 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.034 4.034 25 C -0.087 4.087 26 H 0.268 0.732 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.139 0.861 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.172 0.828 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 -28.545 6.242 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.271 6.271 12 C 0.342 3.658 13 O -0.420 6.420 14 C -0.086 4.086 15 C -0.100 4.100 16 C -0.054 4.054 17 C -0.716 4.716 18 S 2.717 3.283 19 O -0.958 6.958 20 O -0.954 6.954 21 C -0.771 4.771 22 C -0.166 4.166 23 C -0.165 4.165 24 C -0.052 4.052 25 C -0.106 4.106 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.193 0.807 33 H 0.202 0.798 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.190 0.810 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.707 -28.797 5.482 29.548 hybrid contribution 0.993 2.025 0.353 2.282 sum -2.714 -26.773 5.835 27.535 Atomic orbital electron populations 1.70086 1.07772 1.28325 1.50288 1.25952 0.95855 1.03390 0.94063 0.85326 0.78549 0.77790 0.78657 1.19611 1.20344 1.18733 1.21358 0.93726 0.91166 1.52605 0.91656 1.18988 0.94317 0.90402 0.96889 1.23283 0.95222 0.78453 1.01358 1.86554 1.42037 1.15620 1.82881 1.21699 0.85618 0.86002 0.72470 1.90791 1.15870 1.88556 1.46764 1.19583 0.95078 0.89729 1.04228 1.21554 1.01635 0.90457 0.96310 1.21188 0.92588 0.98918 0.92663 1.31018 1.05123 1.21244 1.14215 1.04162 0.73359 0.73127 0.77695 1.93548 1.63196 1.64372 1.74655 1.93548 1.42790 1.84651 1.74425 1.31890 1.08691 1.15781 1.20748 1.23178 0.99077 0.88660 1.05681 1.23204 0.88764 0.99632 1.04901 1.21217 1.01771 0.90027 0.92220 1.21818 0.92916 1.00091 0.95736 0.92288 0.97412 0.97220 0.91750 0.91930 0.82848 0.80704 0.79820 0.84277 0.86825 0.86155 0.84702 0.81030 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.29 21.44 0.28 -54.64 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.55 -30.95 9.11 25.60 0.23 -30.72 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.66 5.35 29.85 0.16 1.82 16 10 C 0.09 4.00 5.41 71.98 0.39 4.39 16 11 O -0.35 -14.18 9.47 -56.20 -0.53 -14.71 16 12 C 0.50 17.71 7.90 70.33 0.56 18.27 16 13 O -0.53 -20.88 16.14 19.94 0.32 -20.56 16 14 C -0.09 -2.36 5.87 -20.10 -0.12 -2.48 16 15 C -0.08 -1.83 9.60 22.54 0.22 -1.62 16 16 C -0.04 -0.64 9.45 22.23 0.21 -0.43 16 17 C -0.63 -11.32 5.67 22.33 0.13 -11.19 16 18 S 2.53 39.16 5.52 -56.49 -0.31 38.85 16 19 O -0.96 -20.27 17.11 -127.65 -2.18 -22.46 16 20 O -0.96 -19.63 16.39 -127.65 -2.09 -21.73 16 21 C -0.66 -5.03 6.40 30.59 0.20 -4.83 16 22 C -0.13 -0.64 10.30 30.61 0.32 -0.32 16 23 C -0.13 -0.72 10.17 30.61 0.31 -0.41 16 24 C -0.03 -0.65 9.45 22.23 0.21 -0.44 16 25 C -0.09 -2.08 9.62 22.54 0.22 -1.87 16 26 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.15 3.24 7.65 -2.91 -0.02 3.22 16 32 H 0.18 2.22 7.56 -2.91 -0.02 2.20 16 33 H 0.18 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.12 0.75 7.66 -2.39 -0.02 0.73 16 37 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.17 2.49 7.55 -2.91 -0.02 2.47 16 39 H 0.15 3.63 7.61 -2.91 -0.02 3.61 16 Total: -1.00 -76.01 357.74 2.06 -73.95 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.07 Total: 4.97 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.48 Total: -29.00 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.28 Total: -54.64 kcal Atomic # 8 Polarization: -74.97 SS G_CDS: -4.49 Total: -79.46 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 39.16 SS G_CDS: -0.31 Total: 38.85 kcal Total: -76.01 2.06 -73.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.249 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds