Wall clock time and date at job start Tue Mar 31 2020 13:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48500 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47140 * 300.00041 * 3 2 1 6 6 H 1.48498 * 109.47251 * 59.99894 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99749 * 197.86140 * 7 2 1 9 9 C 1.41394 * 120.00204 * 17.85136 * 7 2 1 10 10 C 1.40718 * 120.24487 * 204.38158 * 9 7 2 11 11 C 1.37619 * 119.74534 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24598 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74679 * 179.97438 * 12 11 10 14 14 O 1.45197 * 109.46905 * 90.00443 * 13 12 11 15 15 C 1.34225 * 116.99842 * 180.02562 * 14 13 12 16 16 O 1.20828 * 120.00375 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00307 * 180.02562 * 15 14 13 18 18 S 1.81397 * 109.47580 * 180.02562 * 17 15 14 19 19 O 1.42105 * 108.57458 * 294.48386 * 18 17 15 20 20 O 1.42104 * 108.57984 * 65.50784 * 18 17 15 21 21 C 1.81403 * 101.92296 * 180.02562 * 18 17 15 22 22 C 1.52996 * 117.49543 * 253.74729 * 21 18 17 23 23 C 1.52994 * 117.49819 * 185.08812 * 21 18 17 24 24 C 1.38629 * 120.50322 * 0.26131 * 12 11 10 25 25 C 1.37618 * 120.24602 * 359.43541 * 24 12 11 26 26 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.12930 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.87543 * 180.02562 * 11 10 9 29 29 H 1.09003 * 109.46932 * 210.00355 * 13 12 11 30 30 H 1.08998 * 109.46914 * 329.99925 * 13 12 11 31 31 H 1.09005 * 109.46614 * 300.00284 * 17 15 14 32 32 H 1.09002 * 109.47102 * 59.99207 * 17 15 14 33 33 H 1.08994 * 115.55031 * 39.41149 * 21 18 17 34 34 H 1.09007 * 117.50096 * 359.97438 * 22 21 18 35 35 H 1.08996 * 117.49976 * 145.02436 * 22 21 18 36 36 H 1.09000 * 117.49828 * 214.97738 * 23 21 18 37 37 H 1.09004 * 117.50205 * 359.97438 * 23 21 18 38 38 H 1.08003 * 119.87900 * 179.70284 * 24 12 11 39 39 H 1.08008 * 120.12476 * 180.27828 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3764 10 6 1.8259 -3.6499 0.0822 11 6 1.1799 -4.8065 -0.2904 12 6 0.0668 -4.7501 -1.1149 13 6 -0.6316 -6.0238 -1.5165 14 8 -1.6655 -6.3355 -0.5459 15 6 -2.3859 -7.4479 -0.7589 16 8 -2.1603 -8.1380 -1.7247 17 6 -3.4768 -7.8355 0.2059 18 16 -4.2590 -9.3741 -0.3522 19 8 -4.9197 -9.1246 -1.5853 20 8 -3.3019 -10.4217 -0.2773 21 6 -5.5133 -9.6434 0.9304 22 6 -5.2543 -10.7549 1.9494 23 6 -6.3208 -10.9414 0.8673 24 6 -0.4052 -3.5315 -1.5775 25 6 0.2213 -2.3618 -1.2126 26 1 -0.4850 0.8400 0.0004 27 1 2.6931 -3.6962 0.7243 28 1 1.5415 -5.7617 0.0607 29 1 -1.0834 -5.8957 -2.5002 30 1 0.0912 -6.8388 -1.5520 31 1 -3.0489 -7.9847 1.1973 32 1 -4.2233 -7.0424 0.2480 33 1 -6.0262 -8.7481 1.2817 34 1 -4.3304 -11.3246 1.8488 35 1 -5.5972 -10.5911 2.9709 36 1 -7.3649 -10.9001 1.1775 37 1 -6.0987 -11.6334 0.0549 38 1 -1.2704 -3.4996 -2.2232 39 1 -0.1508 -1.4131 -1.5706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:48 Heat of formation + Delta-G solvation = -108.192057 kcal Electronic energy + Delta-G solvation = -23873.150440 eV Core-core repulsion = 20067.139650 eV Total energy + Delta-G solvation = -3806.010790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37340 -37.79119 -37.65857 -37.07725 -36.43379 -36.11947 -33.93783 -31.46275 -30.49134 -29.41882 -27.19762 -24.28558 -23.79557 -23.12096 -21.39599 -21.13401 -20.12704 -19.07598 -18.12249 -17.44889 -17.28895 -16.98646 -16.77253 -15.91362 -15.70152 -15.43233 -15.29121 -14.35862 -14.09546 -13.94758 -13.84767 -13.26153 -12.88190 -12.45654 -12.42189 -12.35454 -12.25524 -12.10760 -12.07941 -11.81569 -11.65299 -11.60015 -11.39210 -11.23609 -11.04278 -10.99663 -10.86730 -10.65696 -10.47954 -10.29175 -9.76192 -9.52661 -9.27751 -7.62229 -7.51287 -6.92111 -4.51754 -0.45992 2.07377 2.25621 2.33476 2.68137 2.81646 2.95829 2.99864 3.04888 3.12660 3.50509 3.78421 3.81798 4.03837 4.17675 4.30649 4.38150 4.63512 4.69526 4.92495 4.97687 5.04557 5.26924 5.42102 5.54957 5.58882 5.60943 5.98086 6.19356 6.26248 6.59689 6.82296 6.92420 7.12713 7.20975 7.46418 7.63904 7.72447 7.90860 7.95215 8.13794 8.48769 8.73250 8.81261 10.01552 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.002176 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.386502 B =12863.967505 C =13121.894219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.062 4.062 12 C -0.240 4.240 13 C 0.131 3.869 14 O -0.337 6.337 15 C 0.486 3.514 16 O -0.509 6.509 17 C -0.631 4.631 18 S 2.478 3.522 19 O -0.915 6.915 20 O -0.916 6.916 21 C -0.680 4.680 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.075 4.075 25 C -0.171 4.171 26 H 0.283 0.717 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -14.040 4.863 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.241 4.241 13 C 0.060 3.940 14 O -0.252 6.252 15 C 0.328 3.672 16 O -0.399 6.399 17 C -0.756 4.756 18 S 2.654 3.346 19 O -0.912 6.912 20 O -0.913 6.913 21 C -0.788 4.788 22 C -0.165 4.165 23 C -0.161 4.161 24 C -0.093 4.093 25 C -0.190 4.190 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.187 0.813 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.485 -14.507 3.845 18.898 hybrid contribution 0.020 1.628 0.850 1.836 sum -11.465 -12.879 4.695 17.870 Atomic orbital electron populations 1.69833 1.07714 1.29516 1.33753 1.25995 0.94779 1.01637 0.92091 0.86217 0.81031 0.80581 0.78703 1.18245 1.19542 1.19853 1.19727 0.98275 0.91206 1.39010 0.90045 1.17707 0.90767 0.92120 0.87837 1.20972 1.04158 0.92640 1.07200 1.20411 0.95034 0.96735 0.95903 1.18650 1.01381 0.91812 1.12256 1.21940 0.86306 0.96375 0.89382 1.86720 1.45823 1.39511 1.53172 1.21860 0.81263 0.80350 0.83729 1.90789 1.67490 1.52221 1.29449 1.30650 1.08704 1.25099 1.11155 1.06602 0.76052 0.76090 0.75901 1.93595 1.75173 1.84737 1.37673 1.93583 1.59570 1.51859 1.86337 1.32312 1.21786 1.03092 1.21604 1.22971 1.02009 0.96003 0.95536 1.22817 0.98613 0.92709 1.01929 1.20554 0.97698 0.92433 0.98635 1.21301 0.99715 0.96671 1.01337 0.90623 0.88623 0.89181 0.91417 0.91467 0.81254 0.81361 0.82028 0.85974 0.86710 0.86562 0.87199 0.89213 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.49 10.95 55.55 0.61 -18.89 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.87 29.60 -169.99 -5.03 12.83 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.45 -11.59 9.05 -37.74 -0.34 -11.93 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.12 3.07 5.57 -106.83 -0.60 2.47 16 10 C -0.23 -5.50 9.80 -38.87 -0.38 -5.89 16 11 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 12 C -0.24 -5.25 5.54 -104.33 -0.58 -5.83 16 13 C 0.13 2.51 5.58 36.01 0.20 2.71 16 14 O -0.34 -6.17 10.20 -39.24 -0.40 -6.57 16 15 C 0.49 7.91 7.98 36.01 0.29 8.19 16 16 O -0.51 -9.64 15.37 -21.37 -0.33 -9.96 16 17 C -0.63 -6.42 6.40 36.01 0.23 -6.19 16 18 S 2.48 27.13 4.35 -107.50 -0.47 26.66 16 19 O -0.91 -13.51 17.94 -59.55 -1.07 -14.58 16 20 O -0.92 -12.76 17.10 -59.51 -1.02 -13.78 16 21 C -0.68 -4.30 6.25 -26.74 -0.17 -4.46 16 22 C -0.13 -0.67 10.13 -26.70 -0.27 -0.94 16 23 C -0.12 -0.69 10.30 -26.70 -0.27 -0.97 16 24 C -0.07 -1.72 9.67 -39.66 -0.38 -2.10 16 25 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 26 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 27 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.17 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.17 1.16 8.14 -51.92 -0.42 0.73 16 33 H 0.16 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.12 0.68 7.58 -51.93 -0.39 0.29 16 35 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 39 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -34.05 355.73 -10.34 -44.39 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.91 Total: 4.20 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -3.08 Total: -29.67 kcal Atomic # 7 Polarization: -19.49 SS G_CDS: 0.61 Total: -18.89 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -2.82 Total: -44.89 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 27.13 SS G_CDS: -0.47 Total: 26.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.05 -10.34 -44.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.801 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds