Wall clock time and date at job start Tue Mar 31 2020 13:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48500 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47140 * 300.00041 * 3 2 1 6 6 H 1.48498 * 109.47251 * 59.99894 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99749 * 197.86140 * 7 2 1 9 9 C 1.41394 * 120.00204 * 17.85136 * 7 2 1 10 10 C 1.40718 * 120.24487 * 204.38158 * 9 7 2 11 11 C 1.37619 * 119.74534 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24598 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74679 * 179.97438 * 12 11 10 14 14 O 1.45197 * 109.46905 * 90.00443 * 13 12 11 15 15 C 1.34225 * 116.99842 * 180.02562 * 14 13 12 16 16 O 1.20828 * 120.00375 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00307 * 180.02562 * 15 14 13 18 18 S 1.81397 * 109.47580 * 180.02562 * 17 15 14 19 19 O 1.42105 * 108.57458 * 294.48386 * 18 17 15 20 20 O 1.42104 * 108.57984 * 65.50784 * 18 17 15 21 21 C 1.81403 * 101.92296 * 180.02562 * 18 17 15 22 22 C 1.52996 * 117.49543 * 253.74729 * 21 18 17 23 23 C 1.52994 * 117.49819 * 185.08812 * 21 18 17 24 24 C 1.38629 * 120.50322 * 0.26131 * 12 11 10 25 25 C 1.37618 * 120.24602 * 359.43541 * 24 12 11 26 26 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.12930 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.87543 * 180.02562 * 11 10 9 29 29 H 1.09003 * 109.46932 * 210.00355 * 13 12 11 30 30 H 1.08998 * 109.46914 * 329.99925 * 13 12 11 31 31 H 1.09005 * 109.46614 * 300.00284 * 17 15 14 32 32 H 1.09002 * 109.47102 * 59.99207 * 17 15 14 33 33 H 1.08994 * 115.55031 * 39.41149 * 21 18 17 34 34 H 1.09007 * 117.50096 * 359.97438 * 22 21 18 35 35 H 1.08996 * 117.49976 * 145.02436 * 22 21 18 36 36 H 1.09000 * 117.49828 * 214.97738 * 23 21 18 37 37 H 1.09004 * 117.50205 * 359.97438 * 23 21 18 38 38 H 1.08003 * 119.87900 * 179.70284 * 24 12 11 39 39 H 1.08008 * 120.12476 * 180.27828 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3764 10 6 1.8259 -3.6499 0.0822 11 6 1.1799 -4.8065 -0.2904 12 6 0.0668 -4.7501 -1.1149 13 6 -0.6316 -6.0238 -1.5165 14 8 -1.6655 -6.3355 -0.5459 15 6 -2.3859 -7.4479 -0.7589 16 8 -2.1603 -8.1380 -1.7247 17 6 -3.4768 -7.8355 0.2059 18 16 -4.2590 -9.3741 -0.3522 19 8 -4.9197 -9.1246 -1.5853 20 8 -3.3019 -10.4217 -0.2773 21 6 -5.5133 -9.6434 0.9304 22 6 -5.2543 -10.7549 1.9494 23 6 -6.3208 -10.9414 0.8673 24 6 -0.4052 -3.5315 -1.5775 25 6 0.2213 -2.3618 -1.2126 26 1 -0.4850 0.8400 0.0004 27 1 2.6931 -3.6962 0.7243 28 1 1.5415 -5.7617 0.0607 29 1 -1.0834 -5.8957 -2.5002 30 1 0.0912 -6.8388 -1.5520 31 1 -3.0489 -7.9847 1.1973 32 1 -4.2233 -7.0424 0.2480 33 1 -6.0262 -8.7481 1.2817 34 1 -4.3304 -11.3246 1.8488 35 1 -5.5972 -10.5911 2.9709 36 1 -7.3649 -10.9001 1.1775 37 1 -6.0987 -11.6334 0.0549 38 1 -1.2704 -3.4996 -2.2232 39 1 -0.1508 -1.4131 -1.5706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:48 Heat of formation + Delta-G solvation = -129.798785 kcal Electronic energy + Delta-G solvation = -23874.087378 eV Core-core repulsion = 20067.139650 eV Total energy + Delta-G solvation = -3806.947728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74074 -39.55448 -38.35219 -37.86879 -37.76912 -37.10705 -35.73013 -32.88504 -31.83110 -31.25197 -28.89700 -25.74208 -24.68277 -23.50187 -22.99612 -22.66013 -21.87709 -19.89725 -19.30286 -19.16363 -18.23051 -18.13547 -17.95342 -17.22952 -16.85912 -16.70056 -16.00469 -15.88348 -15.61555 -15.58720 -14.53084 -14.49457 -14.45674 -14.01676 -13.88022 -13.68286 -13.57289 -13.32160 -13.20472 -12.88823 -12.73110 -12.67913 -12.53612 -12.34984 -12.19525 -12.09054 -12.04566 -11.99044 -11.82642 -11.54263 -11.41918 -11.32609 -11.07176 -9.47639 -9.37285 -8.71511 -6.42343 -1.26362 0.66103 0.82318 1.08198 1.35222 1.39616 1.53816 1.59309 1.66617 2.18224 2.21237 2.60591 2.76520 3.06976 3.36600 3.49797 3.70297 3.71745 3.90427 3.98275 4.00018 4.04779 4.16983 4.41424 4.44981 4.51415 4.63708 4.71119 4.92636 4.98095 5.07857 5.09641 5.23352 5.28204 5.36595 5.62146 5.84278 6.03069 6.10536 6.28706 6.34684 6.61513 6.85769 6.93935 8.25280 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.002176 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.386502 B =12863.967505 C =13121.894219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.245 4.245 11 C -0.064 4.064 12 C -0.234 4.234 13 C 0.133 3.867 14 O -0.346 6.346 15 C 0.477 3.523 16 O -0.543 6.543 17 C -0.624 4.624 18 S 2.464 3.536 19 O -0.968 6.968 20 O -0.961 6.961 21 C -0.656 4.656 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.080 4.080 25 C -0.194 4.194 26 H 0.291 0.709 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.209 0.791 32 H 0.207 0.793 33 H 0.200 0.800 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 -14.363 6.856 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.518 4.518 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.264 4.264 11 C -0.082 4.082 12 C -0.236 4.236 13 C 0.061 3.939 14 O -0.261 6.261 15 C 0.321 3.679 16 O -0.435 6.435 17 C -0.748 4.748 18 S 2.647 3.353 19 O -0.965 6.965 20 O -0.958 6.958 21 C -0.769 4.769 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.098 4.098 25 C -0.214 4.214 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.226 0.774 32 H 0.224 0.776 33 H 0.217 0.783 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.871 -14.849 5.798 20.488 hybrid contribution 0.331 1.529 0.277 1.588 sum -12.540 -13.320 6.076 19.277 Atomic orbital electron populations 1.69872 1.09115 1.30909 1.34216 1.26842 0.95525 1.04761 0.91055 0.85109 0.79436 0.75860 0.79038 1.18063 1.18877 1.18864 1.19965 0.98550 0.92350 1.40941 0.90122 1.18065 0.91517 0.93265 0.88621 1.21185 1.04789 0.92766 1.07666 1.20728 0.94681 0.97422 0.95375 1.18933 1.01205 0.92532 1.10881 1.21785 0.87017 0.95372 0.89761 1.86667 1.45946 1.40792 1.52741 1.22883 0.81661 0.79043 0.84303 1.90783 1.68524 1.52909 1.31251 1.30749 1.07451 1.25498 1.11111 1.06559 0.76431 0.75658 0.76647 1.93534 1.75846 1.85262 1.41831 1.93527 1.61619 1.53283 1.87364 1.31916 1.19987 1.05296 1.19701 1.23227 1.01578 0.94465 0.96734 1.23141 1.00280 0.91737 1.02034 1.20787 0.98019 0.92342 0.98676 1.21273 1.00619 0.96913 1.02549 0.89793 0.87745 0.86289 0.90904 0.90322 0.77351 0.77596 0.78305 0.86752 0.83668 0.83901 0.88000 0.87529 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.41 10.95 21.83 0.24 -41.17 16 2 C 0.03 1.68 5.14 85.25 0.44 2.12 16 3 Si 0.99 36.78 29.60 68.60 2.03 38.81 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.49 -25.71 9.05 23.46 0.21 -25.50 16 8 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 9 C 0.09 4.68 5.57 -21.29 -0.12 4.56 16 10 C -0.24 -11.81 9.80 22.73 0.22 -11.58 16 11 C -0.06 -2.78 9.67 22.22 0.21 -2.56 16 12 C -0.23 -10.11 5.54 -19.67 -0.11 -10.22 16 13 C 0.13 4.93 5.58 71.24 0.40 5.33 16 14 O -0.35 -12.13 10.20 -51.37 -0.52 -12.65 16 15 C 0.48 14.90 7.98 71.24 0.57 15.47 16 16 O -0.54 -20.59 15.37 24.46 0.38 -20.21 16 17 C -0.62 -10.94 6.40 71.24 0.46 -10.49 16 18 S 2.46 51.25 4.35 -56.49 -0.25 51.00 16 19 O -0.97 -28.90 17.94 -125.73 -2.26 -31.15 16 20 O -0.96 -26.94 17.10 -125.77 -2.15 -29.09 16 21 C -0.66 -5.91 6.25 30.59 0.19 -5.72 16 22 C -0.12 -0.84 10.13 30.62 0.31 -0.53 16 23 C -0.13 -1.10 10.30 30.62 0.32 -0.78 16 24 C -0.08 -3.71 9.67 22.22 0.21 -3.49 16 25 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 26 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 27 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 30 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 31 H 0.21 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.21 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.20 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.11 1.02 7.58 -2.38 -0.02 1.00 16 35 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 39 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 Total: -1.00 -78.24 355.73 2.05 -76.19 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.07 Total: 21.60 kcal Atomic # 6 Polarization: -56.83 SS G_CDS: 3.51 Total: -53.32 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.24 Total: -41.17 kcal Atomic # 8 Polarization: -88.55 SS G_CDS: -4.56 Total: -93.11 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 51.25 SS G_CDS: -0.25 Total: 51.00 kcal Total: -78.24 2.05 -76.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.606 kcal (2) G-P(sol) polarization free energy of solvation -78.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds