Wall clock time and date at job start Tue Mar 31 2020 13:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31576 * 122.22772 * 2 1 4 4 C 1.29988 * 117.13432 * 179.97438 * 3 2 1 5 5 N 1.38743 * 125.36455 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99998 * 180.02562 * 5 4 3 7 7 O 1.21643 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.43194 * 119.99979 * 179.72544 * 6 5 4 9 9 C 7.02424 * 147.33253 * 359.81875 * 2 1 3 10 10 C 8.44366 * 144.43182 * 359.77978 * 2 1 3 11 11 C 1.53002 * 109.47429 * 352.77973 * 10 9 8 12 12 C 1.52997 * 109.47029 * 112.78275 * 10 9 8 13 13 C 1.53000 * 109.47139 * 232.78172 * 10 9 8 14 14 S 1.76133 * 109.26613 * 0.22461 * 4 3 2 15 15 C 1.34678 * 122.23313 * 179.97438 * 2 1 3 16 16 S 1.76200 * 125.92839 * 0.03054 * 15 2 1 17 17 C 1.76195 * 100.00002 * 179.97438 * 16 15 2 18 18 H 1.08001 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.38434 * 120.00045 * 179.97438 * 17 16 15 20 20 N 1.31809 * 119.99678 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99975 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47376 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47132 * 120.00444 * 21 19 17 24 24 H 1.48502 * 109.47327 * 239.99861 * 21 19 17 25 25 H 1.08993 * 109.47127 * 90.03102 * 1 2 3 26 26 H 1.08998 * 109.46580 * 210.02972 * 1 2 3 27 27 H 1.09001 * 109.46830 * 330.02850 * 1 2 3 28 28 H 0.97000 * 119.99890 * 359.97438 * 5 4 3 29 29 H 1.09002 * 109.46787 * 59.99946 * 11 10 9 30 30 H 1.08996 * 109.47439 * 180.02562 * 11 10 9 31 31 H 1.09005 * 109.47089 * 300.00288 * 11 10 9 32 32 H 1.08998 * 109.47244 * 59.99948 * 12 10 9 33 33 H 1.09005 * 109.46816 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.47264 * 299.99231 * 12 10 9 35 35 H 1.09005 * 109.47057 * 59.99909 * 13 10 9 36 36 H 1.08991 * 109.47705 * 180.02562 * 13 10 9 37 37 H 1.09006 * 109.46787 * 300.00596 * 13 10 9 38 38 H 0.97003 * 119.99550 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5034 0.9976 0.0005 5 7 4.4037 2.0533 0.0001 6 6 5.7291 1.8087 0.0002 7 8 6.1359 0.6623 0.0011 8 6 6.6582 2.8982 -0.0062 9 6 7.4201 3.7914 -0.0120 10 6 8.3753 4.9114 -0.0189 11 6 9.7957 4.3716 0.1600 12 6 8.2771 5.6571 -1.3512 13 6 8.0458 5.8697 1.1274 14 16 3.9347 -0.7101 -0.0054 15 6 2.2253 -1.1392 0.0005 16 16 1.5699 -2.7748 0.0005 17 6 3.0667 -3.7042 0.0005 18 1 4.0189 -3.1945 0.0001 19 6 3.0223 -5.0879 0.0011 20 7 1.8602 -5.7099 0.0010 21 14 4.6092 -6.0732 0.0004 22 1 5.7684 -5.1450 -0.0001 23 1 4.6612 -6.9287 1.2132 24 1 4.6597 -6.9296 -1.2118 25 1 -0.3633 -0.0006 -1.0276 26 1 -0.3632 -0.8897 0.5143 27 1 -0.3633 0.8903 0.5134 28 1 4.0792 2.9674 -0.0010 29 1 10.0304 3.6888 -0.6566 30 1 10.5029 5.2009 0.1554 31 1 9.8656 3.8402 1.1093 32 1 7.2653 6.0418 -1.4786 33 1 8.9841 6.4868 -1.3561 34 1 8.5120 4.9745 -2.1678 35 1 8.1157 5.3384 2.0767 36 1 8.7527 6.6993 1.1222 37 1 7.0338 6.2542 1.0000 38 1 1.8291 -6.6794 0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837382718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:35 Heat of formation + Delta-G solvation = 38.976491 kcal Electronic energy + Delta-G solvation = -21059.078325 eV Core-core repulsion = 17734.494864 eV Total energy + Delta-G solvation = -3324.583461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11083 -38.54047 -37.92550 -34.81516 -32.82938 -32.60083 -30.46192 -27.77955 -27.75661 -27.14287 -25.79566 -25.39549 -22.63879 -21.27498 -20.25690 -18.62289 -17.77517 -17.22182 -16.30157 -15.88068 -15.59527 -15.13322 -15.10817 -14.74094 -14.72417 -14.03966 -13.99122 -13.20615 -12.91937 -12.91134 -12.69952 -12.24870 -12.17450 -12.16357 -11.89932 -11.76179 -11.71202 -11.37783 -11.28020 -11.17708 -10.98353 -10.66338 -10.65013 -10.57990 -10.24949 -10.03481 -9.55921 -9.10045 -8.77232 -8.67073 -7.82486 -6.60921 -6.51601 -4.28431 1.05334 1.69431 1.81429 2.03299 2.48418 2.83432 3.07755 3.08522 3.18396 3.19588 3.35096 3.66994 3.82712 3.98156 4.42923 4.45440 4.52878 4.82068 4.98354 5.02690 5.13531 5.15429 5.18880 5.28506 5.37979 5.38319 5.54736 5.62292 5.78985 5.80905 5.96995 6.09407 6.23289 6.42693 6.45964 6.92039 6.93123 7.12476 7.33155 7.86259 8.04205 8.48770 8.87988 10.44808 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002939 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.130853 B = 9526.362402 C =11077.120866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.020 3.980 3 N -0.471 5.471 4 C 0.183 3.817 5 N -0.601 5.601 6 C 0.627 3.373 7 O -0.488 6.488 8 C -0.215 4.215 9 C -0.057 4.057 10 C 0.036 3.964 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.142 4.142 14 S 0.204 5.796 15 C -0.249 4.249 16 S 0.154 5.846 17 C -0.556 4.556 18 H 0.090 0.910 19 C 0.082 3.918 20 N -0.862 5.862 21 Si 0.924 3.076 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.417 0.583 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 20.680 -0.033 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.192 5.192 4 C -0.188 4.188 5 N -0.249 5.249 6 C 0.413 3.587 7 O -0.363 6.363 8 C -0.218 4.218 9 C -0.060 4.060 10 C 0.036 3.964 11 C -0.201 4.201 12 C -0.199 4.199 13 C -0.199 4.199 14 S 0.448 5.552 15 C -0.486 4.486 16 S 0.405 5.595 17 C -0.705 4.705 18 H 0.108 0.892 19 C -0.129 4.129 20 N -0.495 5.495 21 Si 0.749 3.251 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.255 0.745 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.600 19.032 -0.039 21.316 hybrid contribution 1.116 0.342 0.002 1.168 sum 10.716 19.375 -0.037 22.141 Atomic orbital electron populations 1.20121 0.87947 1.02163 1.01843 1.19036 0.96717 0.84490 1.12086 1.65798 1.02687 1.32477 1.18214 1.23619 0.89823 0.92610 1.12728 1.42032 1.03755 1.08510 1.70638 1.14558 0.80131 0.86187 0.77816 1.90874 1.77173 1.20641 1.47628 1.20023 0.99592 0.96135 1.06028 1.22488 0.95578 0.94383 0.93505 1.17988 0.91575 0.89074 0.97784 1.21929 0.93395 1.01709 1.03053 1.21914 1.02948 1.00216 0.94861 1.21916 1.02538 0.98482 0.96999 1.85875 1.01752 0.95187 1.72366 1.28801 1.01218 1.06812 1.11801 1.83070 1.11023 0.84316 1.81136 1.23325 0.93633 0.94060 1.59490 0.89214 1.25035 0.98313 0.96682 0.92876 1.70022 1.24377 1.10288 1.44836 0.85984 0.81340 0.79451 0.78334 1.18715 1.19986 1.19981 0.91823 0.90999 0.91889 0.74480 0.91739 0.91083 0.91770 0.91784 0.91003 0.91787 0.91802 0.91011 0.91778 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.15 16 3 N -0.47 -9.54 10.55 -9.81 -0.10 -9.64 16 4 C 0.18 3.60 8.39 -87.31 -0.73 2.87 16 5 N -0.60 -9.45 5.39 -14.01 -0.08 -9.53 16 6 C 0.63 10.20 7.61 -14.34 -0.11 10.09 16 7 O -0.49 -9.77 14.60 5.24 0.08 -9.70 16 8 C -0.21 -2.82 13.61 -38.84 -0.53 -3.35 16 9 C -0.06 -0.60 11.77 -37.12 -0.44 -1.04 16 10 C 0.04 0.25 0.95 -157.30 -0.15 0.10 16 11 C -0.14 -0.90 8.43 37.16 0.31 -0.59 16 12 C -0.14 -0.80 8.43 37.16 0.31 -0.49 16 13 C -0.14 -0.78 8.43 37.16 0.31 -0.47 16 14 S 0.20 4.59 18.34 -107.50 -1.97 2.62 16 15 C -0.25 -5.78 6.67 29.47 0.20 -5.59 16 16 S 0.15 3.86 20.74 -107.50 -2.23 1.63 16 17 C -0.56 -15.20 9.26 30.80 0.29 -14.91 16 18 H 0.09 2.45 5.97 -52.49 -0.31 2.13 16 19 C 0.08 2.20 5.49 -17.49 -0.10 2.10 16 20 N -0.86 -23.76 13.22 55.47 0.73 -23.02 16 21 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 22 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.25 7.38 -51.93 -0.38 0.87 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.42 5.10 8.78 -40.82 -0.36 4.75 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.28 7.05 8.32 -40.82 -0.34 6.71 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -31.47 359.52 -8.85 -40.32 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.84 Total: -1.75 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.84 Total: -12.12 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.55 Total: -42.19 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -4.20 Total: 4.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.47 -8.85 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837382718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.298 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds