Wall clock time and date at job start Tue Mar 31 2020 13:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31576 * 122.22772 * 2 1 4 4 C 1.29988 * 117.13432 * 179.97438 * 3 2 1 5 5 N 1.38743 * 125.36455 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99998 * 180.02562 * 5 4 3 7 7 O 1.21643 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.43194 * 119.99979 * 179.72544 * 6 5 4 9 9 C 7.02424 * 147.33253 * 359.81875 * 2 1 3 10 10 C 8.44366 * 144.43182 * 359.77978 * 2 1 3 11 11 C 1.53002 * 109.47429 * 352.77973 * 10 9 8 12 12 C 1.52997 * 109.47029 * 112.78275 * 10 9 8 13 13 C 1.53000 * 109.47139 * 232.78172 * 10 9 8 14 14 S 1.76133 * 109.26613 * 0.22461 * 4 3 2 15 15 C 1.34678 * 122.23313 * 179.97438 * 2 1 3 16 16 S 1.76200 * 125.92839 * 0.03054 * 15 2 1 17 17 C 1.76195 * 100.00002 * 179.97438 * 16 15 2 18 18 H 1.08001 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.38434 * 120.00045 * 179.97438 * 17 16 15 20 20 N 1.31809 * 119.99678 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99975 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47376 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47132 * 120.00444 * 21 19 17 24 24 H 1.48502 * 109.47327 * 239.99861 * 21 19 17 25 25 H 1.08993 * 109.47127 * 90.03102 * 1 2 3 26 26 H 1.08998 * 109.46580 * 210.02972 * 1 2 3 27 27 H 1.09001 * 109.46830 * 330.02850 * 1 2 3 28 28 H 0.97000 * 119.99890 * 359.97438 * 5 4 3 29 29 H 1.09002 * 109.46787 * 59.99946 * 11 10 9 30 30 H 1.08996 * 109.47439 * 180.02562 * 11 10 9 31 31 H 1.09005 * 109.47089 * 300.00288 * 11 10 9 32 32 H 1.08998 * 109.47244 * 59.99948 * 12 10 9 33 33 H 1.09005 * 109.46816 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.47264 * 299.99231 * 12 10 9 35 35 H 1.09005 * 109.47057 * 59.99909 * 13 10 9 36 36 H 1.08991 * 109.47705 * 180.02562 * 13 10 9 37 37 H 1.09006 * 109.46787 * 300.00596 * 13 10 9 38 38 H 0.97003 * 119.99550 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5034 0.9976 0.0005 5 7 4.4037 2.0533 0.0001 6 6 5.7291 1.8087 0.0002 7 8 6.1359 0.6623 0.0011 8 6 6.6582 2.8982 -0.0062 9 6 7.4201 3.7914 -0.0120 10 6 8.3753 4.9114 -0.0189 11 6 9.7957 4.3716 0.1600 12 6 8.2771 5.6571 -1.3512 13 6 8.0458 5.8697 1.1274 14 16 3.9347 -0.7101 -0.0054 15 6 2.2253 -1.1392 0.0005 16 16 1.5699 -2.7748 0.0005 17 6 3.0667 -3.7042 0.0005 18 1 4.0189 -3.1945 0.0001 19 6 3.0223 -5.0879 0.0011 20 7 1.8602 -5.7099 0.0010 21 14 4.6092 -6.0732 0.0004 22 1 5.7684 -5.1450 -0.0001 23 1 4.6612 -6.9287 1.2132 24 1 4.6597 -6.9296 -1.2118 25 1 -0.3633 -0.0006 -1.0276 26 1 -0.3632 -0.8897 0.5143 27 1 -0.3633 0.8903 0.5134 28 1 4.0792 2.9674 -0.0010 29 1 10.0304 3.6888 -0.6566 30 1 10.5029 5.2009 0.1554 31 1 9.8656 3.8402 1.1093 32 1 7.2653 6.0418 -1.4786 33 1 8.9841 6.4868 -1.3561 34 1 8.5120 4.9745 -2.1678 35 1 8.1157 5.3384 2.0767 36 1 8.7527 6.6993 1.1222 37 1 7.0338 6.2542 1.0000 38 1 1.8291 -6.6794 0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837382718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:34 Heat of formation + Delta-G solvation = 20.644757 kcal Electronic energy + Delta-G solvation = -21059.873248 eV Core-core repulsion = 17734.494864 eV Total energy + Delta-G solvation = -3325.378384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56237 -40.19223 -38.54388 -36.31482 -34.83109 -33.59825 -31.97991 -28.83218 -28.21720 -28.19584 -27.74335 -26.74461 -23.94563 -22.50779 -21.60865 -20.27644 -19.34284 -18.83729 -17.58600 -17.18006 -17.08186 -17.02454 -16.43515 -15.68321 -15.64842 -15.24349 -15.18430 -14.96697 -14.43629 -13.63844 -13.44091 -13.38271 -13.32648 -13.30058 -13.08059 -12.96342 -12.86291 -12.61486 -12.48014 -12.33468 -12.31860 -12.22263 -12.05137 -11.74507 -11.43633 -11.38027 -11.35489 -10.89090 -10.55111 -10.52707 -9.58870 -8.59289 -8.40374 -6.31510 -0.43073 0.13305 0.32202 0.76525 0.91987 1.26027 1.31975 1.40602 1.52819 1.60841 1.77779 2.13030 2.26289 2.80197 2.82417 3.07295 3.64545 3.85726 3.92957 3.93492 4.19958 4.40384 4.58535 4.73968 4.75198 4.84184 4.85351 4.93365 4.96023 4.96204 4.96934 5.04681 5.20129 5.29083 5.35098 5.36833 5.42819 5.75267 5.98986 6.01183 6.52460 6.77552 6.85899 8.48609 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002939 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.130853 B = 9526.362402 C =11077.120866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.474 5.474 4 C 0.219 3.781 5 N -0.589 5.589 6 C 0.636 3.364 7 O -0.528 6.528 8 C -0.268 4.268 9 C -0.004 4.004 10 C 0.029 3.971 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.141 4.141 14 S 0.161 5.839 15 C -0.276 4.276 16 S 0.110 5.890 17 C -0.577 4.577 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.894 5.894 21 Si 0.985 3.015 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.263 1.263 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.437 0.563 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 24.026 -0.068 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.196 5.196 4 C -0.153 4.153 5 N -0.240 5.240 6 C 0.424 3.576 7 O -0.405 6.405 8 C -0.271 4.271 9 C -0.007 4.007 10 C 0.029 3.971 11 C -0.202 4.202 12 C -0.199 4.199 13 C -0.198 4.198 14 S 0.406 5.594 15 C -0.512 4.512 16 S 0.358 5.642 17 C -0.726 4.726 18 H 0.098 0.902 19 C -0.171 4.171 20 N -0.528 5.528 21 Si 0.806 3.194 22 H -0.194 1.194 23 H -0.187 1.187 24 H -0.187 1.187 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.279 0.721 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.189 22.447 -0.074 25.082 hybrid contribution 0.773 -0.254 0.011 0.814 sum 11.962 22.193 -0.063 25.212 Atomic orbital electron populations 1.20263 0.85348 1.03287 1.03247 1.19726 0.98499 0.83939 1.08298 1.66008 1.02379 1.31581 1.19638 1.23889 0.90152 0.92551 1.08724 1.42080 1.03258 1.08489 1.70124 1.14898 0.80288 0.86416 0.75978 1.90859 1.77717 1.22691 1.49232 1.19445 1.01116 0.97148 1.09398 1.23408 0.93947 0.93563 0.89770 1.18412 0.90946 0.88215 0.99544 1.21976 0.93312 1.02596 1.02316 1.21951 1.03912 1.00637 0.93352 1.21951 1.03495 0.98655 0.95720 1.86089 1.02488 0.97728 1.73109 1.28640 1.01345 1.06269 1.14904 1.82866 1.11027 0.85861 1.84422 1.23499 0.93929 0.94883 1.60262 0.90164 1.25874 1.01393 0.97412 0.92434 1.70091 1.26030 1.10771 1.45940 0.85091 0.77186 0.77977 0.79099 1.19384 1.18743 1.18734 0.90157 0.91176 0.89398 0.72085 0.92578 0.88303 0.92499 0.91617 0.88402 0.92524 0.92412 0.88450 0.91571 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.02 71.24 0.71 -1.37 16 2 C 0.04 1.55 6.73 41.78 0.28 1.83 16 3 N -0.47 -18.59 10.55 -184.96 -1.95 -20.54 16 4 C 0.22 8.50 8.39 179.19 1.50 10.00 16 5 N -0.59 -17.86 5.39 -316.47 -1.70 -19.56 16 6 C 0.64 20.48 7.61 85.49 0.65 21.13 16 7 O -0.53 -21.51 14.60 -4.17 -0.06 -21.57 16 8 C -0.27 -6.74 13.61 30.01 0.41 -6.33 16 9 C 0.00 -0.08 11.77 31.12 0.37 0.29 16 10 C 0.03 0.31 0.95 -53.99 -0.05 0.26 16 11 C -0.14 -1.39 8.43 71.98 0.61 -0.78 16 12 C -0.14 -1.09 8.43 71.98 0.61 -0.48 16 13 C -0.14 -1.04 8.43 71.98 0.61 -0.44 16 14 S 0.16 7.43 18.34 -56.49 -1.04 6.40 16 15 C -0.28 -13.09 6.67 67.00 0.45 -12.65 16 16 S 0.11 5.77 20.74 -56.49 -1.17 4.59 16 17 C -0.58 -32.86 9.26 67.87 0.63 -32.23 16 18 H 0.08 4.59 5.97 -2.91 -0.02 4.57 16 19 C 0.04 2.00 5.49 84.74 0.47 2.46 16 20 N -0.89 -50.64 13.22 21.59 0.29 -50.36 16 21 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 25 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.07 2.41 7.38 -2.39 -0.02 2.39 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.44 9.80 8.78 -92.71 -0.81 8.99 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.28 14.69 8.32 -92.71 -0.77 13.91 16 Total: -1.00 -70.62 359.52 3.91 -66.71 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.29 Total: 7.05 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 7.23 Total: -18.31 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -3.37 Total: -90.46 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 13.20 SS G_CDS: -2.21 Total: 10.99 kcal Total: -70.62 3.91 -66.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837382718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.359 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds