Wall clock time and date at job start Tue Mar 31 2020 14:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 O 1.42901 * 109.47226 * 180.02562 * 14 12 11 16 16 C 1.42901 * 113.99881 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47026 * 179.97438 * 16 15 14 18 18 C 1.38265 * 119.98973 * 269.72414 * 17 16 15 19 19 C 1.38224 * 120.02103 * 179.76828 * 18 17 16 20 20 C 1.38230 * 120.01468 * 0.50632 * 19 18 17 21 21 C 1.38335 * 119.98847 * 359.74797 * 20 19 18 22 22 Cl 1.73596 * 120.01571 * 180.02562 * 21 20 19 23 23 C 1.38187 * 119.99345 * 89.99904 * 17 16 15 24 24 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 25 25 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 26 26 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 28 28 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 29 29 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 30 30 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 31 31 H 1.09003 * 109.47066 * 299.99978 * 16 15 14 32 32 H 1.09002 * 109.47441 * 59.99863 * 16 15 14 33 33 H 1.07995 * 119.98826 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.98825 * 180.25385 * 19 18 17 35 35 H 1.08007 * 120.00762 * 179.76301 * 20 19 18 36 36 H 1.08000 * 120.01193 * 359.95825 * 23 17 16 37 37 H 1.08998 * 117.50651 * 0.02562 * 24 9 7 38 38 H 1.09007 * 117.49575 * 145.02284 * 24 9 7 39 39 H 1.09004 * 117.50100 * 214.97609 * 25 9 7 40 40 H 1.09000 * 117.49932 * 359.97275 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 8 1.9599 -4.9273 5.3659 16 6 2.9063 -5.3450 6.3517 17 6 2.1747 -5.8924 7.5502 18 6 1.8212 -5.0502 8.5882 19 6 1.1460 -5.5508 9.6855 20 6 0.8331 -6.8956 9.7505 21 6 1.1912 -7.7397 8.7147 22 17 0.7979 -9.4286 8.7953 23 6 1.8625 -7.2371 7.6140 24 6 1.7506 -3.4762 -1.2120 25 6 0.4464 -2.7040 -1.4262 26 1 -0.4851 0.8400 0.0004 27 1 0.0687 -2.3413 1.6431 28 1 0.1035 -3.9677 0.9206 29 1 3.1884 -5.1435 3.7191 30 1 3.1534 -3.5168 4.4410 31 1 3.5492 -6.1193 5.9331 32 1 3.5144 -4.4930 6.6557 33 1 2.0698 -4.0004 8.5400 34 1 0.8665 -4.8916 10.4941 35 1 0.3089 -7.2873 10.6098 36 1 2.1420 -7.8955 6.8049 37 1 2.6146 -3.1810 -1.8073 38 1 1.6745 -4.5406 -0.9896 39 1 -0.4872 -3.2607 -1.3448 40 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838808270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:28 Heat of formation + Delta-G solvation = -87.030346 kcal Electronic energy + Delta-G solvation = -23641.048050 eV Core-core repulsion = 19833.911194 eV Total energy + Delta-G solvation = -3807.136856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98995 -39.65391 -37.84326 -36.79149 -36.58806 -35.19991 -32.42961 -31.98722 -31.07625 -28.98169 -26.74954 -25.88003 -25.09493 -23.04192 -21.84826 -21.26250 -20.55014 -19.28563 -17.70023 -17.11189 -16.71800 -16.64687 -16.26168 -15.87769 -15.78295 -15.31911 -14.90019 -14.57832 -14.22020 -13.99452 -13.75956 -13.65817 -13.13409 -12.63304 -12.55071 -11.99057 -11.93952 -11.85198 -11.69648 -11.66638 -11.54157 -11.10344 -10.99476 -10.88620 -10.57636 -10.31252 -9.98935 -9.94163 -9.87124 -9.57813 -9.32202 -9.04005 -8.85837 -8.49485 -8.23991 -6.09222 -4.14986 0.75313 0.88583 1.80319 2.68409 2.72497 3.28074 3.31752 3.33502 3.35477 4.02451 4.36621 4.41755 4.50425 4.68762 4.81950 4.90275 4.95155 5.07509 5.14688 5.15629 5.20623 5.21381 5.38575 5.45360 5.52321 5.84441 5.95894 5.96120 6.13180 6.21500 6.30784 6.41468 6.50158 6.59778 6.70034 6.84106 7.00706 7.22075 7.33393 7.44338 7.83705 8.32811 8.42252 8.86451 9.50966 11.00162 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.002178 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.153079 B =12851.346570 C =13597.407553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.118 3.882 11 O -0.336 6.336 12 C 0.453 3.547 13 O -0.502 6.502 14 C 0.070 3.930 15 O -0.360 6.360 16 C 0.102 3.898 17 C -0.075 4.075 18 C -0.091 4.091 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.039 4.039 22 Cl -0.071 7.071 23 C -0.087 4.087 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.262 0.738 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 -13.391 17.819 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.045 3.955 11 O -0.252 6.252 12 C 0.294 3.706 13 O -0.390 6.390 14 C -0.007 4.007 15 O -0.280 6.280 16 C 0.025 3.975 17 C -0.076 4.076 18 C -0.109 4.109 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.065 4.065 22 Cl -0.042 7.042 23 C -0.106 4.106 24 C -0.242 4.242 25 C -0.183 4.183 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.201 -13.453 17.886 22.977 hybrid contribution 0.359 0.793 -0.046 0.872 sum 5.560 -12.660 17.840 22.571 Atomic orbital electron populations 1.69984 1.05921 1.26894 1.48938 1.25026 0.94865 0.99112 0.94479 0.86639 0.79629 0.82892 0.78743 1.20121 1.21270 1.20139 1.20342 0.93046 0.88331 1.51191 0.91881 1.18775 0.98956 0.94198 0.84409 1.22945 0.85703 0.97085 0.89794 1.86475 1.41870 1.71157 1.25733 1.22952 0.89419 0.75587 0.82636 1.90655 1.21191 1.50658 1.76515 1.21702 0.93138 1.00362 0.85487 1.88052 1.32090 1.81859 1.25957 1.21362 0.90481 0.98919 0.86702 1.19498 1.00059 0.92835 0.95191 1.21238 0.96594 1.00038 0.93021 1.21131 0.98431 0.94653 0.98635 1.21114 0.99924 0.93371 0.97992 1.20890 1.02699 0.85649 0.97277 1.98376 1.92880 1.14627 1.98351 1.20978 0.97382 0.95410 0.96815 1.23011 0.98416 0.95711 1.07081 1.22552 0.92521 1.01274 1.01911 0.92785 0.90442 0.94194 0.89098 0.88818 0.91657 0.91448 0.84957 0.84750 0.84861 0.84674 0.90030 0.91508 0.91586 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 12.93 55.43 0.72 -24.02 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -13.22 8.77 -34.44 -0.30 -13.52 16 8 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 9 C 0.04 0.91 1.61 -155.66 -0.25 0.66 16 10 C 0.12 2.79 5.29 37.15 0.20 2.99 16 11 O -0.34 -7.25 10.16 -39.25 -0.40 -7.65 16 12 C 0.45 8.74 8.03 36.01 0.29 9.03 16 13 O -0.50 -11.39 16.25 -25.48 -0.41 -11.80 16 14 C 0.07 0.95 6.53 36.01 0.24 1.18 16 15 O -0.36 -5.08 9.86 -55.18 -0.54 -5.62 16 16 C 0.10 0.97 6.06 36.01 0.22 1.19 16 17 C -0.08 -0.76 5.51 -104.63 -0.58 -1.33 16 18 C -0.09 -0.82 9.70 -39.58 -0.38 -1.20 16 19 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 20 C -0.11 -0.89 9.83 -39.55 -0.39 -1.28 16 21 C -0.04 -0.37 6.32 -39.49 -0.25 -0.62 16 22 Cl -0.07 -0.66 28.96 -51.86 -1.50 -2.16 16 23 C -0.09 -0.87 9.49 -39.55 -0.38 -1.25 16 24 C -0.20 -4.40 9.96 -26.70 -0.27 -4.66 16 25 C -0.15 -3.34 9.43 -26.69 -0.25 -3.59 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.08 2.04 8.13 -51.93 -0.42 1.62 16 28 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -31.91 370.57 -9.63 -41.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.46 Total: 0.28 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.60 Total: -11.92 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.72 Total: -24.02 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.36 Total: -25.07 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.91 -9.63 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838808270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.493 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds