Wall clock time and date at job start Tue Mar 31 2020 14:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 O 1.42901 * 109.47226 * 180.02562 * 14 12 11 16 16 C 1.42901 * 113.99881 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47026 * 179.97438 * 16 15 14 18 18 C 1.38265 * 119.98973 * 269.72414 * 17 16 15 19 19 C 1.38224 * 120.02103 * 179.76828 * 18 17 16 20 20 C 1.38230 * 120.01468 * 0.50632 * 19 18 17 21 21 C 1.38335 * 119.98847 * 359.74797 * 20 19 18 22 22 Cl 1.73596 * 120.01571 * 180.02562 * 21 20 19 23 23 C 1.38187 * 119.99345 * 89.99904 * 17 16 15 24 24 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 25 25 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 26 26 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 28 28 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 29 29 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 30 30 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 31 31 H 1.09003 * 109.47066 * 299.99978 * 16 15 14 32 32 H 1.09002 * 109.47441 * 59.99863 * 16 15 14 33 33 H 1.07995 * 119.98826 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.98825 * 180.25385 * 19 18 17 35 35 H 1.08007 * 120.00762 * 179.76301 * 20 19 18 36 36 H 1.08000 * 120.01193 * 359.95825 * 23 17 16 37 37 H 1.08998 * 117.50651 * 0.02562 * 24 9 7 38 38 H 1.09007 * 117.49575 * 145.02284 * 24 9 7 39 39 H 1.09004 * 117.50100 * 214.97609 * 25 9 7 40 40 H 1.09000 * 117.49932 * 359.97275 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 8 1.9599 -4.9273 5.3659 16 6 2.9063 -5.3450 6.3517 17 6 2.1747 -5.8924 7.5502 18 6 1.8212 -5.0502 8.5882 19 6 1.1460 -5.5508 9.6855 20 6 0.8331 -6.8956 9.7505 21 6 1.1912 -7.7397 8.7147 22 17 0.7979 -9.4286 8.7953 23 6 1.8625 -7.2371 7.6140 24 6 1.7506 -3.4762 -1.2120 25 6 0.4464 -2.7040 -1.4262 26 1 -0.4851 0.8400 0.0004 27 1 0.0687 -2.3413 1.6431 28 1 0.1035 -3.9677 0.9206 29 1 3.1884 -5.1435 3.7191 30 1 3.1534 -3.5168 4.4410 31 1 3.5492 -6.1193 5.9331 32 1 3.5144 -4.4930 6.6557 33 1 2.0698 -4.0004 8.5400 34 1 0.8665 -4.8916 10.4941 35 1 0.3089 -7.2873 10.6098 36 1 2.1420 -7.8955 6.8049 37 1 2.6146 -3.1810 -1.8073 38 1 1.6745 -4.5406 -0.9896 39 1 -0.4872 -3.2607 -1.3448 40 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838808270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:28 Heat of formation + Delta-G solvation = -102.754485 kcal Electronic energy + Delta-G solvation = -23641.729900 eV Core-core repulsion = 19833.911194 eV Total energy + Delta-G solvation = -3807.818705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42090 -40.48596 -38.96842 -38.30852 -37.42358 -36.89878 -34.02355 -33.15306 -31.73678 -30.23235 -28.28646 -27.28692 -26.59569 -23.69964 -23.02017 -22.54134 -22.05623 -21.19521 -18.86410 -18.47572 -17.93414 -17.81436 -17.55606 -16.95137 -16.91993 -16.57748 -16.41853 -15.92420 -15.62069 -14.99470 -14.80018 -14.55135 -14.44497 -14.05850 -13.79706 -13.57863 -13.20608 -13.11069 -12.90306 -12.78586 -12.54171 -12.41280 -12.40680 -12.31120 -12.08849 -11.78681 -11.69216 -11.66283 -11.33263 -10.80924 -10.76954 -10.49088 -10.09306 -9.99727 -9.72566 -8.13423 -6.25169 0.06340 0.21224 1.10554 1.19880 1.43522 1.44618 1.47368 1.52659 2.42828 2.51535 3.10077 3.15813 3.41592 3.72253 3.78438 3.83157 4.05090 4.12830 4.17530 4.20152 4.25330 4.28201 4.38295 4.41762 4.47286 4.52297 4.65422 4.74636 4.82505 4.89841 4.97021 5.18304 5.18779 5.31705 5.44339 5.46395 5.57826 5.67338 5.75054 5.78127 5.95878 6.35482 6.80424 6.82583 7.43904 8.95372 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.002178 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.153079 B =12851.346570 C =13597.407553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.130 3.870 11 O -0.342 6.342 12 C 0.446 3.554 13 O -0.544 6.544 14 C 0.081 3.919 15 O -0.393 6.393 16 C 0.098 3.902 17 C -0.093 4.093 18 C -0.101 4.101 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.053 4.053 22 Cl -0.074 7.074 23 C -0.101 4.101 24 C -0.175 4.175 25 C -0.150 4.150 26 H 0.261 0.739 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.793 -13.639 18.689 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.056 3.944 11 O -0.258 6.258 12 C 0.290 3.710 13 O -0.434 6.434 14 C 0.005 3.995 15 O -0.314 6.314 16 C 0.023 3.977 17 C -0.093 4.093 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.080 4.080 22 Cl -0.045 7.045 23 C -0.120 4.120 24 C -0.212 4.212 25 C -0.187 4.187 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.052 -13.717 18.762 24.288 hybrid contribution -0.216 0.807 -0.231 0.867 sum 6.836 -12.910 18.531 23.597 Atomic orbital electron populations 1.70106 1.07274 1.27425 1.50114 1.25768 0.95595 1.02320 0.94273 0.85676 0.78425 0.78891 0.79071 1.19280 1.21318 1.19481 1.20628 0.93076 0.89665 1.50838 0.92236 1.18878 1.00565 0.94883 0.85337 1.22529 0.85934 0.96222 0.89722 1.86475 1.40913 1.71602 1.26782 1.24241 0.90536 0.73934 0.82268 1.90632 1.23436 1.52337 1.77015 1.21825 0.90681 1.02544 0.84475 1.88004 1.34396 1.82270 1.26703 1.21621 0.90026 1.00446 0.85634 1.19701 1.00794 0.92992 0.95840 1.21533 0.96517 1.00704 0.93127 1.21472 0.97578 0.94822 0.99016 1.21406 0.99617 0.93587 0.98188 1.21075 1.03265 0.85814 0.97828 1.98370 1.92915 1.14825 1.98368 1.21127 0.97858 0.95801 0.97186 1.23024 0.97429 0.96389 1.04335 1.22496 0.93939 1.01456 1.00819 0.93021 0.94270 0.93474 0.85411 0.86059 0.89530 0.89186 0.83670 0.82221 0.83161 0.84406 0.89349 0.89009 0.90580 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.15 12.93 21.45 0.28 -51.87 16 2 C 0.02 1.12 5.39 84.65 0.46 1.58 16 3 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.50 -27.13 8.77 25.60 0.22 -26.91 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.19 1.61 -52.93 -0.08 0.10 16 10 C 0.13 6.24 5.29 71.98 0.38 6.62 16 11 O -0.34 -14.59 10.16 -51.40 -0.52 -15.11 16 12 C 0.45 16.98 8.03 71.24 0.57 17.55 16 13 O -0.54 -25.07 16.25 28.37 0.46 -24.60 16 14 C 0.08 1.99 6.53 71.24 0.47 2.45 16 15 O -0.39 -10.40 9.86 -129.90 -1.28 -11.68 16 16 C 0.10 1.64 6.06 71.24 0.43 2.07 16 17 C -0.09 -1.74 5.51 -19.87 -0.11 -1.85 16 18 C -0.10 -1.66 9.70 22.27 0.22 -1.44 16 19 C -0.11 -1.58 10.05 22.26 0.22 -1.35 16 20 C -0.11 -1.70 9.83 22.29 0.22 -1.48 16 21 C -0.05 -0.99 6.32 22.33 0.14 -0.85 16 22 Cl -0.07 -1.32 28.96 -2.72 -0.08 -1.40 16 23 C -0.10 -1.94 9.49 22.29 0.21 -1.73 16 24 C -0.17 -7.20 9.96 30.62 0.30 -6.89 16 25 C -0.15 -6.86 9.43 30.62 0.29 -6.57 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.04 2.15 8.13 -2.39 -0.02 2.13 16 28 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 29 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.09 1.07 8.08 -2.39 -0.02 1.06 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 39 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 40 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.18 370.57 5.86 -64.32 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.04 Total: 14.43 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.94 Total: -18.71 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.28 Total: -51.87 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -1.34 Total: -51.40 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -70.18 5.86 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838808270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.435 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds