Wall clock time and date at job start Tue Mar 31 2020 14:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48500 * 109.47122 * 264.87814 * 3 2 1 5 5 H 1.48505 * 109.47211 * 24.87809 * 3 2 1 6 6 H 1.48505 * 109.46971 * 144.87825 * 3 2 1 7 7 C 1.37877 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99449 * 5.94632 * 7 2 1 9 9 C 1.50697 * 120.00034 * 185.67263 * 7 2 1 10 10 O 1.45198 * 112.85075 * 304.64375 * 9 7 2 11 11 C 1.34230 * 116.99995 * 294.78240 * 10 9 7 12 12 O 1.20828 * 120.00190 * 4.34532 * 11 10 9 13 13 C 1.50698 * 120.00276 * 184.35054 * 11 10 9 14 14 O 1.42901 * 109.47657 * 179.97438 * 13 11 10 15 15 C 1.42896 * 114.00274 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47153 * 180.02562 * 15 14 13 17 17 C 1.38262 * 119.99284 * 269.72596 * 16 15 14 18 18 C 1.38227 * 120.02460 * 179.76830 * 17 16 15 19 19 C 1.38236 * 120.01055 * 0.50369 * 18 17 16 20 20 C 1.38330 * 119.98750 * 359.75598 * 19 18 17 21 21 Cl 1.73605 * 120.01181 * 180.02562 * 20 19 18 22 22 C 1.38192 * 119.99388 * 90.00135 * 16 15 14 23 23 C 1.53778 * 113.61312 * 173.45062 * 9 7 2 24 24 C 1.53955 * 87.01979 * 220.04790 * 23 9 7 25 25 C 1.53777 * 87.11072 * 25.36097 * 24 23 9 26 26 H 0.97003 * 120.00086 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47005 * 300.00235 * 13 11 10 28 28 H 1.09007 * 109.47223 * 59.99674 * 13 11 10 29 29 H 1.08996 * 109.47243 * 300.00556 * 15 14 13 30 30 H 1.09008 * 109.47023 * 60.00304 * 15 14 13 31 31 H 1.07995 * 119.98564 * 359.97438 * 17 16 15 32 32 H 1.07991 * 119.99294 * 180.25677 * 18 17 16 33 33 H 1.07999 * 120.00398 * 179.76552 * 19 18 17 34 34 H 1.08000 * 120.00368 * 359.95807 * 22 16 15 35 35 H 1.09002 * 113.61715 * 334.56607 * 23 9 7 36 36 H 1.09002 * 113.62053 * 105.46650 * 23 9 7 37 37 H 1.09002 * 113.53645 * 270.80796 * 24 23 9 38 38 H 1.08995 * 113.74545 * 139.94809 * 24 23 9 39 39 H 1.09000 * 113.61296 * 220.09453 * 25 24 23 40 40 H 1.08998 * 113.69248 * 89.20167 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6048 1.9840 -1.3945 5 1 1.3965 2.6816 0.5890 6 1 3.4884 1.4739 0.8055 7 6 2.0046 -1.1940 0.0005 8 1 1.4690 -2.1268 -0.0959 9 6 3.5061 -1.1970 0.1295 10 8 4.1604 -0.3845 -0.8804 11 6 4.0430 -0.7862 -2.1558 12 8 3.3501 -1.7379 -2.4281 13 6 4.7754 -0.0504 -3.2480 14 8 4.4933 -0.6635 -4.5076 15 6 5.1422 -0.0384 -5.6167 16 6 4.7755 -0.7623 -6.8865 17 6 5.5523 -1.8166 -7.3301 18 6 5.2138 -2.4842 -8.4922 19 6 4.1043 -2.0913 -9.2171 20 6 3.3298 -1.0331 -8.7766 21 17 1.9359 -0.5396 -9.6862 22 6 3.6661 -0.3687 -7.6105 23 6 4.1091 -2.6043 0.2736 24 6 5.0713 -1.9982 1.3114 25 6 4.0021 -0.9210 1.5587 26 1 -0.4850 0.8401 -0.0004 27 1 4.4484 0.9892 -3.2682 28 1 5.8479 -0.0902 -3.0570 29 1 4.8222 1.0012 -5.6862 30 1 6.2223 -0.0773 -5.4748 31 1 6.4219 -2.1208 -6.7666 32 1 5.8185 -3.3102 -8.8359 33 1 3.8421 -2.6106 -10.1270 34 1 3.0616 0.4573 -7.2659 35 1 3.4176 -3.3348 0.6937 36 1 4.6064 -2.9608 -0.6284 37 1 5.9915 -1.6083 0.8762 38 1 5.2501 -2.6419 2.1726 39 1 4.4133 0.0796 1.6925 40 1 3.2808 -1.1889 2.3306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838878277.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:25 Heat of formation + Delta-G solvation = -97.492594 kcal Electronic energy + Delta-G solvation = -24751.442510 eV Core-core repulsion = 20943.851977 eV Total energy + Delta-G solvation = -3807.590533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57632 -40.53133 -39.35040 -38.27645 -37.43051 -36.20202 -34.57656 -33.14769 -31.75425 -29.91103 -28.75908 -26.86710 -26.59719 -24.25832 -23.71573 -22.56406 -22.35747 -20.08974 -19.36628 -18.33213 -17.77957 -17.74402 -17.60209 -17.06626 -16.74700 -16.51302 -16.39019 -15.88501 -15.41314 -15.10972 -14.87772 -14.68361 -14.47401 -14.26778 -13.75728 -13.46168 -13.25824 -13.17769 -13.06785 -12.96884 -12.55865 -12.43490 -12.33241 -12.18602 -11.99858 -11.87329 -11.80566 -11.65384 -11.19875 -11.01820 -10.80942 -10.59641 -10.44078 -10.01590 -9.74119 -8.38885 -6.48946 0.05373 0.19345 1.08630 1.27148 1.32679 1.39174 1.52015 1.70763 2.32560 2.51287 2.96131 3.15289 3.64641 3.75739 3.80971 3.86097 4.00297 4.02867 4.11118 4.16528 4.20098 4.23293 4.25887 4.39142 4.48443 4.50892 4.73252 4.84180 4.87311 4.96709 5.08818 5.11485 5.17681 5.29690 5.30031 5.44574 5.52182 5.54637 5.77561 5.80199 5.98328 6.28902 6.56491 7.08288 7.23381 8.76683 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.003104 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.472865 B = 9017.353319 C = 9879.967863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.021 3.979 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.211 1.211 7 C -0.519 4.519 8 H 0.026 0.974 9 C 0.175 3.825 10 O -0.354 6.354 11 C 0.443 3.557 12 O -0.516 6.516 13 C 0.074 3.926 14 O -0.393 6.393 15 C 0.096 3.904 16 C -0.093 4.093 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.054 4.054 21 Cl -0.076 7.076 22 C -0.108 4.108 23 C -0.145 4.145 24 C -0.116 4.116 25 C -0.119 4.119 26 H 0.267 0.733 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.453 1.465 -14.967 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.178 4.178 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.134 1.134 7 C -0.556 4.556 8 H 0.044 0.956 9 C 0.140 3.860 10 O -0.272 6.272 11 C 0.285 3.715 12 O -0.403 6.403 13 C -0.003 4.003 14 O -0.313 6.313 15 C 0.021 3.979 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.127 4.127 20 C -0.080 4.080 21 Cl -0.048 7.048 22 C -0.127 4.127 23 C -0.183 4.183 24 C -0.153 4.153 25 C -0.156 4.156 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.833 1.138 -15.103 23.397 hybrid contribution -1.219 0.687 -0.289 1.429 sum 16.614 1.825 -15.392 22.721 Atomic orbital electron populations 1.70089 1.08620 1.28384 1.50780 1.25971 0.95436 1.03668 0.92741 0.85885 0.80359 0.77337 0.79880 1.20137 1.22573 1.13383 1.21218 0.90758 0.93139 1.50478 0.95582 1.21379 0.89447 0.89836 0.85339 1.86255 1.70216 1.54663 1.16106 1.23779 0.79951 0.83355 0.84392 1.90651 1.36785 1.29083 1.83803 1.21934 1.01151 0.96115 0.81102 1.88034 1.72598 1.56502 1.14146 1.21637 0.98447 0.95838 0.81973 1.19698 0.95845 0.98256 0.95523 1.21538 1.00103 0.93409 0.96367 1.21511 0.96491 1.00234 0.94371 1.21424 0.94752 0.95185 1.01380 1.21077 0.92050 0.99485 0.95396 1.98368 1.41428 1.91126 1.73836 1.21122 0.96967 1.00739 0.93823 1.23300 0.98892 0.96706 0.99384 1.22862 0.96502 0.97250 0.98707 1.23243 0.98278 1.00204 0.93887 0.92415 0.88019 0.84719 0.90635 0.88286 0.83008 0.81702 0.82987 0.85343 0.90904 0.92973 0.88657 0.89145 0.90355 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.85 13.96 21.45 0.30 -60.55 16 2 C 0.02 1.26 5.47 84.65 0.46 1.72 16 3 Si 0.94 44.90 25.54 68.60 1.75 46.65 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.21 -8.75 5.15 99.48 0.51 -8.24 16 7 C -0.52 -30.99 7.92 25.60 0.20 -30.79 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.17 8.22 0.11 -11.02 0.00 8.22 16 10 O -0.35 -15.40 7.27 -51.42 -0.37 -15.78 16 11 C 0.44 19.19 7.39 71.24 0.53 19.72 16 12 O -0.52 -27.59 14.63 28.39 0.42 -27.18 16 13 C 0.07 2.18 6.53 71.24 0.47 2.64 16 14 O -0.39 -12.41 9.86 -129.90 -1.28 -13.69 16 15 C 0.10 1.98 6.06 71.24 0.43 2.42 16 16 C -0.09 -2.06 5.51 -19.87 -0.11 -2.17 16 17 C -0.10 -1.73 9.70 22.27 0.22 -1.51 16 18 C -0.11 -1.69 10.05 22.27 0.22 -1.46 16 19 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 20 C -0.05 -1.20 6.32 22.32 0.14 -1.06 16 21 Cl -0.08 -1.70 28.96 -2.72 -0.08 -1.77 16 22 C -0.11 -2.60 9.49 22.29 0.21 -2.38 16 23 C -0.15 -5.99 6.91 31.18 0.22 -5.78 16 24 C -0.12 -3.64 8.03 31.18 0.25 -3.39 16 25 C -0.12 -4.55 6.50 31.12 0.20 -4.35 16 26 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 27 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 28 H 0.14 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.10 1.33 8.08 -2.38 -0.02 1.31 16 31 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.17 1.47 8.06 -2.92 -0.02 1.45 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.07 3.14 8.09 -2.39 -0.02 3.12 16 36 H 0.05 2.16 7.35 -2.39 -0.02 2.14 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.77 6.60 -2.39 -0.02 2.76 16 40 H 0.09 3.53 8.09 -2.39 -0.02 3.51 16 Total: -1.00 -81.17 352.85 5.24 -75.93 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.85 Total: 16.29 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 3.66 Total: -19.92 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.30 Total: -60.55 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -1.24 Total: -56.64 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.75 Total: 46.65 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.77 kcal Total: -81.17 5.24 -75.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838878277.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.559 kcal (2) G-P(sol) polarization free energy of solvation -81.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds