Wall clock time and date at job start Tue Mar 31 2020 14:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99711 * 2 1 4 4 H 1.48499 * 109.47297 * 270.00296 * 3 2 1 5 5 H 1.48496 * 109.47320 * 30.00400 * 3 2 1 6 6 H 1.48504 * 109.46905 * 150.00269 * 3 2 1 7 7 C 1.37869 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00217 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99718 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99894 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46820 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46980 * 64.99994 * 12 11 10 14 14 C 1.34234 * 116.99947 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 12 17 17 H 1.09000 * 115.54686 * 34.33086 * 16 14 13 18 18 C 1.52993 * 117.49961 * 248.62577 * 16 14 13 19 19 C 1.52991 * 117.50010 * 180.02562 * 16 14 13 20 20 H 1.09005 * 117.49711 * 359.97438 * 19 16 14 21 21 C 1.50704 * 117.50122 * 215.00385 * 19 16 14 22 22 C 1.38234 * 119.98630 * 299.72792 * 21 19 16 23 23 C 1.38222 * 120.01276 * 179.72488 * 22 21 19 24 24 C 1.38351 * 119.98324 * 0.54644 * 23 22 21 25 25 Cl 1.73600 * 120.01095 * 179.75164 * 24 23 22 26 26 C 1.38346 * 119.97532 * 359.72489 * 24 23 22 27 27 C 1.38215 * 119.98735 * 0.02562 * 26 24 23 28 28 H 0.97003 * 119.99693 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47059 * 60.00329 * 9 7 2 30 30 H 1.09000 * 109.47289 * 300.00336 * 9 7 2 31 31 H 1.09005 * 109.47519 * 59.99948 * 11 10 9 32 32 H 1.08999 * 109.47239 * 299.99472 * 11 10 9 33 33 H 1.08997 * 109.47282 * 305.00172 * 12 11 10 34 34 H 1.09002 * 109.47256 * 184.99399 * 12 11 10 35 35 H 1.08996 * 117.50008 * 359.97438 * 18 16 14 36 36 H 1.09000 * 117.50123 * 145.01993 * 18 16 14 37 37 H 1.08000 * 119.99696 * 0.02562 * 22 21 19 38 38 H 1.08001 * 120.00289 * 180.27448 * 23 22 21 39 39 H 1.07999 * 120.00557 * 180.02562 * 26 24 23 40 40 H 1.08007 * 119.99467 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0022 11 6 5.4125 -2.6540 -0.0022 12 6 5.8070 -4.1323 -0.0028 13 8 5.3728 -4.7486 -1.2437 14 6 5.6446 -6.0534 -1.4039 15 8 6.2256 -6.6604 -0.5357 16 6 5.2189 -6.7626 -2.6636 17 1 5.2483 -6.1631 -3.5734 18 6 4.1120 -7.8120 -2.5439 19 6 5.5574 -8.2496 -2.7859 20 1 6.0884 -8.7148 -1.9553 21 6 5.9065 -8.7736 -4.1551 22 6 4.9875 -8.6846 -5.1838 23 6 5.3091 -9.1598 -6.4413 24 6 6.5470 -9.7349 -6.6673 25 17 6.9493 -10.3378 -8.2448 26 6 7.4642 -9.8287 -5.6359 27 6 7.1434 -9.3485 -4.3803 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8889 30 1 3.8746 -0.6799 -0.8911 31 1 5.8153 -2.1712 0.8882 32 1 5.8153 -2.1698 -0.8918 33 1 5.3312 -4.6357 0.8388 34 1 6.8898 -4.2194 0.0866 35 1 3.6919 -7.9897 -1.5540 36 1 3.4127 -7.9029 -3.3750 37 1 4.0197 -8.2393 -5.0063 38 1 4.5926 -9.0862 -7.2460 39 1 8.4309 -10.2771 -5.8119 40 1 7.8592 -9.4220 -3.5749 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840668900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:20 Heat of formation + Delta-G solvation = -109.023350 kcal Electronic energy + Delta-G solvation = -23212.585220 eV Core-core repulsion = 19404.494676 eV Total energy + Delta-G solvation = -3808.090544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81366 -40.57791 -38.95413 -38.20005 -37.43079 -36.84907 -34.88980 -32.09320 -31.99635 -31.38574 -29.62703 -26.42510 -24.89783 -24.04421 -23.70392 -23.40114 -21.88872 -21.12088 -19.16564 -19.08509 -18.22648 -17.91899 -17.75718 -17.02802 -16.48873 -16.42311 -16.31776 -16.16865 -15.47644 -15.11982 -14.68393 -14.52878 -14.47609 -14.36223 -14.21777 -13.60984 -13.41264 -13.15914 -13.01599 -12.87019 -12.69776 -12.63906 -12.33061 -12.28382 -11.86854 -11.83457 -11.75000 -11.67704 -11.58468 -11.47816 -11.35460 -10.93136 -10.41538 -10.02696 -9.50963 -8.36802 -6.45218 0.02091 0.30996 0.99576 1.14871 1.34815 1.38106 1.48693 1.56306 2.30151 2.43345 2.91447 2.94246 2.95924 3.39877 3.53356 3.65861 3.79403 3.90882 3.91187 3.95077 4.10125 4.13918 4.32489 4.36510 4.46723 4.48498 4.56177 4.62352 4.70021 4.72497 4.87844 4.97222 4.99729 5.01760 5.23658 5.25219 5.37140 5.42677 5.53699 5.78793 5.91057 6.58159 6.64364 6.71293 7.18846 8.80239 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.001927 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.817173 B =14525.789435 C =15284.976648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.242 1.242 7 C -0.547 4.547 8 H 0.028 0.972 9 C 0.178 3.822 10 O -0.407 6.407 11 C 0.050 3.950 12 C 0.073 3.927 13 O -0.356 6.356 14 C 0.490 3.510 15 O -0.536 6.536 16 C -0.166 4.166 17 H 0.150 0.850 18 C -0.131 4.131 19 C -0.071 4.071 20 H 0.126 0.874 21 C -0.057 4.057 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.048 4.048 25 Cl -0.075 7.075 26 C -0.113 4.113 27 C -0.100 4.100 28 H 0.273 0.727 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.726 -19.433 -12.557 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.165 1.165 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.102 3.898 10 O -0.327 6.327 11 C -0.027 4.027 12 C 0.000 4.000 13 O -0.272 6.272 14 C 0.335 3.665 15 O -0.427 6.427 16 C -0.185 4.185 17 H 0.167 0.833 18 C -0.167 4.167 19 C -0.089 4.089 20 H 0.144 0.856 21 C -0.057 4.057 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.074 4.074 25 Cl -0.046 7.046 26 C -0.131 4.131 27 C -0.118 4.118 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 17.654 -19.680 -12.413 29.207 hybrid contribution 0.069 0.838 0.149 0.854 sum 17.722 -18.842 -12.263 28.627 Atomic orbital electron populations 1.70041 1.08302 1.28803 1.50971 1.25883 0.95860 1.03536 0.93436 0.85577 0.79511 0.77242 0.79811 1.18394 1.19979 1.16513 1.21157 0.91045 0.93796 1.52498 0.95362 1.20373 0.93288 0.80615 0.95484 1.87920 1.20667 1.28708 1.95381 1.22763 0.82837 0.94450 1.02635 1.23267 1.00813 0.92028 0.83898 1.86583 1.73677 1.25064 1.41843 1.23076 0.74924 0.80374 0.88126 1.90617 1.40319 1.67327 1.44417 1.21958 1.08983 0.92034 0.95505 0.83278 1.23402 0.91245 0.96374 1.05688 1.21105 0.99533 0.91894 0.96403 0.85640 1.19208 0.94683 0.98670 0.93164 1.21291 1.00475 0.99167 0.91466 1.21262 0.95433 0.98086 0.98316 1.21162 0.96620 1.02494 0.87150 1.98377 1.93947 1.86640 1.25642 1.21238 0.99934 1.00308 0.91653 1.21169 0.96287 0.97248 0.97099 0.91798 0.96365 0.96761 0.89051 0.91572 0.91285 0.87110 0.87712 0.84295 0.83079 0.83475 0.83447 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.96 42.53 27.47 68.60 1.88 44.42 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.24 -9.73 6.54 99.48 0.65 -9.07 16 7 C -0.55 -33.19 9.99 25.60 0.26 -32.94 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C 0.18 8.75 4.76 71.24 0.34 9.09 16 10 O -0.41 -18.72 10.30 -145.56 -1.50 -20.22 16 11 C 0.05 1.59 6.33 71.98 0.46 2.04 16 12 C 0.07 2.12 5.84 71.98 0.42 2.54 16 13 O -0.36 -11.33 10.19 -48.81 -0.50 -11.83 16 14 C 0.49 13.69 7.74 71.24 0.55 14.24 16 15 O -0.54 -16.64 16.01 21.98 0.35 -16.29 16 16 C -0.17 -3.36 5.94 -11.54 -0.07 -3.43 16 17 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.13 -2.12 9.56 30.57 0.29 -1.83 16 19 C -0.07 -1.17 5.55 -11.56 -0.06 -1.23 16 20 H 0.13 2.22 7.67 -2.38 -0.02 2.20 16 21 C -0.06 -0.83 5.61 -19.86 -0.11 -0.95 16 22 C -0.11 -1.39 9.30 22.26 0.21 -1.18 16 23 C -0.11 -1.51 9.83 22.29 0.22 -1.29 16 24 C -0.05 -0.70 6.32 22.32 0.14 -0.56 16 25 Cl -0.07 -1.08 28.96 -2.72 -0.08 -1.16 16 26 C -0.11 -1.50 9.83 22.29 0.22 -1.28 16 27 C -0.10 -1.36 9.74 22.27 0.22 -1.14 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.02 0.85 7.20 -2.38 -0.02 0.84 16 30 H 0.01 0.67 7.57 -2.39 -0.02 0.66 16 31 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 34 H 0.11 2.50 8.13 -2.39 -0.02 2.48 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.14 1.57 6.17 -2.39 -0.01 1.56 16 37 H 0.15 1.46 6.02 -2.91 -0.02 1.44 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -74.55 363.45 5.00 -69.56 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.00 Total: 11.00 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.54 Total: -16.82 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.30 Total: -58.66 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.64 Total: -48.34 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.42 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -74.55 5.00 -69.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840668900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.464 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds