Wall clock time and date at job start Tue Mar 31 2020 13:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48498 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46896 * 120.00277 * 3 2 1 6 6 H 1.48500 * 109.47405 * 240.00281 * 3 2 1 7 7 C 1.38815 * 120.00104 * 180.28293 * 2 1 3 8 8 H 1.07992 * 119.99557 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99904 * 174.34532 * 9 7 2 11 11 C 1.39118 * 120.19469 * 353.15432 * 10 9 7 12 12 C 1.37906 * 120.05597 * 179.76503 * 11 10 9 13 13 C 1.38686 * 120.44899 * 0.51203 * 12 11 10 14 14 C 1.37779 * 120.38843 * 359.74031 * 13 12 11 15 15 C 1.39741 * 119.93705 * 0.02562 * 14 13 12 16 16 C 1.47281 * 120.22050 * 179.97438 * 15 14 13 17 17 O 1.21537 * 119.99814 * 180.02562 * 16 15 14 18 18 O 1.34781 * 120.00288 * 0.02562 * 16 15 14 19 19 C 1.45194 * 117.00158 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.47183 * 179.97438 * 19 18 16 21 21 O 1.42898 * 110.45769 * 302.60691 * 20 19 18 22 22 C 1.54504 * 110.51161 * 180.02562 * 20 19 18 23 23 C 1.54484 * 104.06511 * 241.35819 * 22 20 19 24 24 O 1.44427 * 104.79942 * 336.02113 * 23 22 20 25 25 C 1.44422 * 105.27830 * 40.51153 * 24 23 22 26 26 H 0.97001 * 120.00298 * 359.72351 * 1 2 3 27 27 H 1.07995 * 119.96848 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.77291 * 180.27009 * 12 11 10 29 29 H 1.07999 * 119.79670 * 179.76681 * 13 12 11 30 30 H 1.08004 * 120.02553 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47267 * 299.99668 * 19 18 16 32 32 H 1.09002 * 109.47380 * 60.00002 * 19 18 16 33 33 H 0.96696 * 114.00221 * 59.30267 * 21 20 19 34 34 H 1.08996 * 110.51375 * 359.97438 * 22 20 19 35 35 H 1.09000 * 110.51301 * 122.71305 * 22 20 19 36 36 H 1.08997 * 110.37779 * 94.84684 * 23 22 20 37 37 H 1.09000 * 110.37334 * 217.08153 * 23 22 20 38 38 H 1.09001 * 110.37827 * 200.65571 * 25 24 23 39 39 H 1.08998 * 110.37136 * 78.31398 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 1.2844 2.7465 0.0006 5 1 3.1032 1.6964 1.2125 6 1 3.1031 1.6965 -1.2125 7 6 2.0095 -1.2021 -0.0059 8 1 3.0895 -1.2020 -0.0064 9 16 1.1286 -2.7280 -0.0128 10 6 2.4710 -3.8555 -0.1896 11 6 3.7582 -3.3804 -0.4188 12 6 4.8076 -4.2652 -0.5519 13 6 4.5890 -5.6323 -0.4695 14 6 3.3208 -6.1232 -0.2482 15 6 2.2464 -5.2409 -0.1060 16 6 0.8881 -5.7589 0.1302 17 8 -0.0434 -4.9880 0.2528 18 8 0.6781 -7.0879 0.2104 19 6 -0.6861 -7.5267 0.4442 20 6 -0.7271 -9.0550 0.5037 21 8 -0.2066 -9.6160 -0.7031 22 6 -2.1700 -9.5487 0.7514 23 6 -2.0828 -10.3038 2.0963 24 8 -0.6987 -10.7011 2.2072 25 6 0.0613 -9.5704 1.7282 26 1 -0.4851 0.8400 0.0041 27 1 3.9364 -2.3176 -0.4892 28 1 5.8057 -3.8912 -0.7254 29 1 5.4178 -6.3159 -0.5791 30 1 3.1573 -7.1889 -0.1846 31 1 -1.0429 -7.1163 1.3888 32 1 -1.3242 -7.1779 -0.3677 33 1 0.7070 -9.3625 -0.8926 34 1 -2.8541 -8.7040 0.8319 35 1 -2.4852 -10.2226 -0.0453 36 1 -2.3555 -9.6444 2.9202 37 1 -2.7309 -11.1801 2.0821 38 1 1.0619 -9.8842 1.4307 39 1 0.1174 -8.7984 2.4956 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842386024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:07 Heat of formation + Delta-G solvation = -150.215874 kcal Electronic energy + Delta-G solvation = -24704.539414 eV Core-core repulsion = 20896.706335 eV Total energy + Delta-G solvation = -3807.833079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49056 -39.61344 -37.92993 -36.57744 -35.61676 -32.88066 -32.04650 -30.88978 -30.41816 -29.46939 -26.36088 -25.94939 -23.82300 -23.03287 -22.05581 -20.74242 -20.61674 -18.26295 -17.53989 -17.37218 -16.82230 -16.33778 -16.15307 -16.05302 -15.53214 -15.26826 -15.08308 -14.28904 -14.17658 -13.76208 -13.65271 -13.30997 -13.12795 -13.04544 -12.69986 -12.47435 -12.19916 -11.86060 -11.74630 -11.65447 -11.32592 -11.26225 -11.20291 -11.03516 -10.55160 -10.45110 -10.41074 -10.21645 -9.87901 -9.81220 -9.61945 -8.85477 -8.48969 -8.34198 -6.71172 -6.58622 -4.31008 1.28470 1.93362 2.80337 3.00599 3.07067 3.11677 3.11829 3.28196 3.64561 3.84031 3.94899 4.23233 4.31956 4.42426 4.56425 4.80087 4.83495 4.91792 4.99994 5.18059 5.23836 5.35392 5.36792 5.39096 5.42466 5.50211 5.53637 5.65342 5.68873 5.88812 6.04701 6.24083 6.42514 6.49297 6.66504 6.76805 6.96523 7.02514 7.33651 7.43188 7.47914 8.03961 8.27747 8.87716 10.44892 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.003202 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.052576 B = 8743.717576 C = 9888.977640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.084 3.916 3 Si 0.922 3.078 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.596 4.596 8 H 0.093 0.907 9 S 0.187 5.813 10 C -0.055 4.055 11 C -0.155 4.155 12 C -0.068 4.068 13 C -0.190 4.190 14 C -0.039 4.039 15 C -0.167 4.167 16 C 0.498 3.502 17 O -0.482 6.482 18 O -0.364 6.364 19 C 0.047 3.953 20 C 0.109 3.891 21 O -0.546 6.546 22 C -0.144 4.144 23 C 0.045 3.955 24 O -0.370 6.370 25 C 0.025 3.975 26 H 0.277 0.723 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.387 0.613 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -15.812 1.456 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.127 4.127 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.742 4.742 8 H 0.111 0.889 9 S 0.452 5.548 10 C -0.175 4.175 11 C -0.180 4.180 12 C -0.090 4.090 13 C -0.215 4.215 14 C -0.058 4.058 15 C -0.181 4.181 16 C 0.344 3.656 17 O -0.371 6.371 18 O -0.283 6.283 19 C -0.028 4.028 20 C 0.067 3.933 21 O -0.353 6.353 22 C -0.181 4.181 23 C -0.032 4.032 24 O -0.289 6.289 25 C -0.052 4.052 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.559 -15.779 1.682 15.945 hybrid contribution 2.269 1.802 -0.182 2.903 sum 0.710 -13.977 1.500 14.075 Atomic orbital electron populations 1.69950 1.06302 1.28810 1.43761 1.25126 0.95015 0.99784 0.92804 0.86153 0.79475 0.80315 0.79399 1.20463 1.19362 1.19356 1.23990 0.97026 0.93682 1.59529 0.88913 1.84654 1.02480 0.93500 1.74148 1.23071 1.01077 0.96499 0.96847 1.21403 0.91433 1.00993 1.04143 1.21168 0.98217 0.93424 0.96233 1.20721 0.96508 0.95254 1.08986 1.21056 0.91916 0.98398 0.94448 1.18246 0.89874 0.92181 1.17775 1.21177 0.90002 0.79538 0.74905 1.90858 1.43925 1.56382 1.45916 1.86422 1.30994 1.26546 1.84336 1.23650 0.82371 0.93544 1.03233 1.22584 0.94751 0.89711 0.86231 1.86509 1.34128 1.73949 1.40697 1.22941 0.94085 1.01790 0.99314 1.23456 0.84456 0.99660 0.95640 1.89150 1.16811 1.37052 1.85863 1.24145 0.96708 0.89391 0.94979 0.91275 0.84112 0.86732 0.86714 0.85946 0.90195 0.90082 0.76414 0.88963 0.88565 0.91778 0.88534 0.88008 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.89 13.22 55.49 0.73 -23.15 16 2 C 0.08 2.23 5.49 -17.46 -0.10 2.14 16 3 Si 0.92 19.98 29.55 -169.99 -5.02 14.96 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.60 -15.83 9.00 30.95 0.28 -15.55 16 8 H 0.09 2.32 4.98 -52.49 -0.26 2.06 16 9 S 0.19 4.81 18.56 -107.50 -2.00 2.81 16 10 C -0.06 -1.21 6.15 -38.37 -0.24 -1.45 16 11 C -0.16 -3.09 9.22 -39.38 -0.36 -3.45 16 12 C -0.07 -1.10 10.03 -39.54 -0.40 -1.50 16 13 C -0.19 -2.81 10.02 -39.58 -0.40 -3.21 16 14 C -0.04 -0.60 9.61 -39.19 -0.38 -0.98 16 15 C -0.17 -3.23 5.89 -104.77 -0.62 -3.84 16 16 C 0.50 9.43 7.87 34.41 0.27 9.70 16 17 O -0.48 -10.62 13.57 -19.29 -0.26 -10.88 16 18 O -0.36 -5.36 8.76 -44.82 -0.39 -5.76 16 19 C 0.05 0.59 4.33 37.16 0.16 0.76 16 20 C 0.11 1.17 1.26 -89.05 -0.11 1.06 16 21 O -0.55 -6.24 13.00 -44.39 -0.58 -6.82 16 22 C -0.14 -1.30 6.54 -25.16 -0.16 -1.46 16 23 C 0.04 0.39 7.63 37.94 0.29 0.68 16 24 O -0.37 -4.29 11.65 -35.23 -0.41 -4.70 16 25 C 0.02 0.26 6.77 37.94 0.26 0.52 16 26 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.14 2.90 5.04 -52.49 -0.26 2.64 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.54 7.61 -52.48 -0.40 1.14 16 31 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.39 3.51 8.58 45.56 0.39 3.90 16 34 H 0.09 0.71 7.73 -51.93 -0.40 0.31 16 35 H 0.10 0.87 8.00 -51.93 -0.42 0.46 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -31.24 344.21 -8.09 -39.33 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -3.85 Total: 5.62 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.50 Total: -16.60 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.73 Total: -23.15 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.64 Total: -28.16 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -2.00 Total: 2.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.24 -8.09 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842386024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.889 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds