Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48498 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46896 * 120.00277 * 3 2 1 6 6 H 1.48500 * 109.47405 * 240.00281 * 3 2 1 7 7 C 1.38815 * 120.00104 * 180.28293 * 2 1 3 8 8 H 1.07992 * 119.99557 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99904 * 174.34532 * 9 7 2 11 11 C 1.39118 * 120.19469 * 353.15432 * 10 9 7 12 12 C 1.37906 * 120.05597 * 179.76503 * 11 10 9 13 13 C 1.38686 * 120.44899 * 0.51203 * 12 11 10 14 14 C 1.37779 * 120.38843 * 359.74031 * 13 12 11 15 15 C 1.39741 * 119.93705 * 0.02562 * 14 13 12 16 16 C 1.47281 * 120.22050 * 179.97438 * 15 14 13 17 17 O 1.21537 * 119.99814 * 180.02562 * 16 15 14 18 18 O 1.34781 * 120.00288 * 0.02562 * 16 15 14 19 19 C 1.45194 * 117.00158 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.47183 * 179.97438 * 19 18 16 21 21 O 1.42898 * 110.45769 * 302.60691 * 20 19 18 22 22 C 1.54504 * 110.51161 * 180.02562 * 20 19 18 23 23 C 1.54484 * 104.06511 * 241.35819 * 22 20 19 24 24 O 1.44427 * 104.79942 * 336.02113 * 23 22 20 25 25 C 1.44422 * 105.27830 * 40.51153 * 24 23 22 26 26 H 0.97001 * 120.00298 * 359.72351 * 1 2 3 27 27 H 1.07995 * 119.96848 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.77291 * 180.27009 * 12 11 10 29 29 H 1.07999 * 119.79670 * 179.76681 * 13 12 11 30 30 H 1.08004 * 120.02553 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47267 * 299.99668 * 19 18 16 32 32 H 1.09002 * 109.47380 * 60.00002 * 19 18 16 33 33 H 0.96696 * 114.00221 * 59.30267 * 21 20 19 34 34 H 1.08996 * 110.51375 * 359.97438 * 22 20 19 35 35 H 1.09000 * 110.51301 * 122.71305 * 22 20 19 36 36 H 1.08997 * 110.37779 * 94.84684 * 23 22 20 37 37 H 1.09000 * 110.37334 * 217.08153 * 23 22 20 38 38 H 1.09001 * 110.37827 * 200.65571 * 25 24 23 39 39 H 1.08998 * 110.37136 * 78.31398 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 1.2844 2.7465 0.0006 5 1 3.1032 1.6964 1.2125 6 1 3.1031 1.6965 -1.2125 7 6 2.0095 -1.2021 -0.0059 8 1 3.0895 -1.2020 -0.0064 9 16 1.1286 -2.7280 -0.0128 10 6 2.4710 -3.8555 -0.1896 11 6 3.7582 -3.3804 -0.4188 12 6 4.8076 -4.2652 -0.5519 13 6 4.5890 -5.6323 -0.4695 14 6 3.3208 -6.1232 -0.2482 15 6 2.2464 -5.2409 -0.1060 16 6 0.8881 -5.7589 0.1302 17 8 -0.0434 -4.9880 0.2528 18 8 0.6781 -7.0879 0.2104 19 6 -0.6861 -7.5267 0.4442 20 6 -0.7271 -9.0550 0.5037 21 8 -0.2066 -9.6160 -0.7031 22 6 -2.1700 -9.5487 0.7514 23 6 -2.0828 -10.3038 2.0963 24 8 -0.6987 -10.7011 2.2072 25 6 0.0613 -9.5704 1.7282 26 1 -0.4851 0.8400 0.0041 27 1 3.9364 -2.3176 -0.4892 28 1 5.8057 -3.8912 -0.7254 29 1 5.4178 -6.3159 -0.5791 30 1 3.1573 -7.1889 -0.1846 31 1 -1.0429 -7.1163 1.3888 32 1 -1.3242 -7.1779 -0.3677 33 1 0.7070 -9.3625 -0.8926 34 1 -2.8541 -8.7040 0.8319 35 1 -2.4852 -10.2226 -0.0453 36 1 -2.3555 -9.6444 2.9202 37 1 -2.7309 -11.1801 2.0821 38 1 1.0619 -9.8842 1.4307 39 1 0.1174 -8.7984 2.4956 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842386024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = -171.713395 kcal Electronic energy + Delta-G solvation = -24705.471616 eV Core-core repulsion = 20896.706335 eV Total energy + Delta-G solvation = -3808.765282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69236 -40.71135 -39.33327 -37.71654 -36.79749 -34.80742 -32.98684 -32.25073 -31.87118 -30.32280 -27.88186 -27.39976 -25.10994 -23.92067 -23.47356 -22.07070 -21.60486 -19.96212 -18.89460 -18.59396 -17.94451 -17.50709 -17.29440 -17.17009 -17.07986 -16.60402 -16.11505 -15.70589 -15.62156 -15.03005 -14.89381 -14.68071 -14.46860 -14.14029 -13.75544 -13.59121 -13.44415 -13.28635 -12.98661 -12.95545 -12.82753 -12.56818 -12.48298 -12.12702 -12.05702 -11.83671 -11.66114 -11.48912 -11.39068 -11.28618 -10.64642 -10.46811 -10.14903 -9.91163 -8.55852 -8.49803 -6.30349 -0.16894 0.50853 1.24742 1.37901 1.42502 1.48007 1.60560 1.64698 2.18092 2.82723 2.85919 2.95652 3.04730 3.17040 3.35147 3.53669 3.66850 3.91334 4.01349 4.06114 4.19624 4.24810 4.30142 4.41182 4.55059 4.60439 4.62076 4.66699 4.76940 4.78306 4.89552 4.96845 5.08409 5.25158 5.34567 5.44338 5.54214 5.64698 5.68667 6.06131 6.12602 6.66600 6.81117 6.92224 8.56003 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.003202 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.052576 B = 8743.717576 C = 9888.977640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.603 4.603 8 H 0.099 0.901 9 S 0.068 5.932 10 C -0.067 4.067 11 C -0.176 4.176 12 C -0.057 4.057 13 C -0.161 4.161 14 C -0.033 4.033 15 C -0.174 4.174 16 C 0.501 3.499 17 O -0.518 6.518 18 O -0.345 6.345 19 C 0.045 3.955 20 C 0.114 3.886 21 O -0.556 6.556 22 C -0.144 4.144 23 C 0.041 3.959 24 O -0.390 6.390 25 C 0.025 3.975 26 H 0.277 0.723 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -18.473 1.339 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.749 4.749 8 H 0.116 0.884 9 S 0.328 5.672 10 C -0.185 4.185 11 C -0.201 4.201 12 C -0.078 4.078 13 C -0.184 4.184 14 C -0.052 4.052 15 C -0.186 4.186 16 C 0.347 3.653 17 O -0.409 6.409 18 O -0.262 6.262 19 C -0.029 4.029 20 C 0.073 3.927 21 O -0.364 6.364 22 C -0.182 4.182 23 C -0.035 4.035 24 O -0.309 6.309 25 C -0.052 4.052 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.172 0.828 29 H 0.186 0.814 30 H 0.181 0.819 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.246 0.754 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.572 -18.541 1.556 18.672 hybrid contribution 1.503 2.184 -0.173 2.657 sum 3.075 -16.356 1.383 16.700 Atomic orbital electron populations 1.70101 1.08040 1.29442 1.46186 1.26149 0.95853 1.03463 0.92479 0.85074 0.78116 0.75603 0.79776 1.19981 1.18531 1.18362 1.24190 0.97177 0.93940 1.59587 0.88386 1.84801 1.06460 0.95928 1.79973 1.22982 1.00206 0.96661 0.98611 1.21450 0.91863 1.01203 1.05612 1.21645 0.98724 0.93724 0.93678 1.21391 0.97436 0.95269 1.04297 1.21563 0.91094 0.99843 0.92707 1.18620 0.91329 0.91744 1.16875 1.21330 0.89708 0.80495 0.73782 1.90869 1.45084 1.57671 1.47248 1.86393 1.32357 1.23978 1.83505 1.23883 0.80966 0.95152 1.02939 1.22595 0.96027 0.87745 0.86361 1.86508 1.35029 1.73944 1.40946 1.23007 0.93196 1.02258 0.99705 1.23654 0.83518 1.00696 0.95612 1.89129 1.18194 1.37581 1.85985 1.24168 0.97052 0.89319 0.94667 0.91367 0.85779 0.82788 0.81449 0.81908 0.90064 0.91053 0.75359 0.87905 0.88474 0.90651 0.86747 0.87099 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.69 13.22 21.65 0.29 -53.41 16 2 C 0.03 1.48 5.49 84.87 0.47 1.95 16 3 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.60 -33.90 9.00 67.96 0.61 -33.29 16 8 H 0.10 5.15 4.98 -2.91 -0.01 5.14 16 9 S 0.07 3.80 18.56 -56.49 -1.05 2.75 16 10 C -0.07 -2.99 6.15 23.06 0.14 -2.85 16 11 C -0.18 -6.92 9.22 22.40 0.21 -6.71 16 12 C -0.06 -1.59 10.03 22.30 0.22 -1.36 16 13 C -0.16 -3.75 10.02 22.27 0.22 -3.53 16 14 C -0.03 -0.88 9.61 22.52 0.22 -0.66 16 15 C -0.17 -6.53 5.89 -19.96 -0.12 -6.65 16 16 C 0.50 19.02 7.87 70.20 0.55 19.57 16 17 O -0.52 -24.05 13.57 19.72 0.27 -23.78 16 18 O -0.34 -9.68 8.76 -53.00 -0.46 -10.14 16 19 C 0.05 1.12 4.33 71.98 0.31 1.43 16 20 C 0.11 2.27 1.26 -9.78 -0.01 2.26 16 21 O -0.56 -11.58 13.00 -140.23 -1.82 -13.40 16 22 C -0.14 -2.37 6.54 31.61 0.21 -2.17 16 23 C 0.04 0.63 7.63 72.49 0.55 1.19 16 24 O -0.39 -8.26 11.65 -148.98 -1.74 -10.00 16 25 C 0.02 0.48 6.77 72.49 0.49 0.97 16 26 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.12 5.24 5.04 -2.91 -0.01 5.23 16 28 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.16 3.09 7.61 -2.91 -0.02 3.07 16 31 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.40 6.16 8.58 -74.06 -0.64 5.53 16 34 H 0.10 1.46 7.73 -2.39 -0.02 1.44 16 35 H 0.10 1.60 8.00 -2.39 -0.02 1.59 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 39 H 0.07 1.36 7.83 -2.39 -0.02 1.34 16 Total: -1.00 -74.56 344.21 2.05 -72.51 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.46 Total: 20.89 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.07 Total: -29.87 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.29 Total: -53.41 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -3.76 Total: -57.32 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.05 Total: 2.75 kcal Total: -74.56 2.05 -72.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842386024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.201 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds