Wall clock time and date at job start Tue Mar 31 2020 13:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86797 * 120.00420 * 2 1 4 4 H 1.48492 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47047 * 300.00374 * 3 2 1 6 6 H 1.48502 * 109.47161 * 59.99995 * 3 2 1 7 7 C 1.38821 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00173 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.76194 * 100.00243 * 174.34790 * 9 7 2 11 11 C 1.39117 * 120.19535 * 353.16112 * 10 9 7 12 12 C 1.37904 * 120.05916 * 179.97438 * 11 10 9 13 13 C 1.38671 * 120.45036 * 0.02562 * 12 11 10 14 14 C 1.37778 * 120.39353 * 0.02562 * 13 12 11 15 15 C 1.39754 * 119.93103 * 359.72477 * 14 13 12 16 16 C 1.47281 * 120.22155 * 180.27448 * 15 14 13 17 17 O 1.21525 * 119.99883 * 180.25230 * 16 15 14 18 18 O 1.34786 * 120.00087 * 0.25114 * 16 15 14 19 19 C 1.45197 * 116.99927 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47081 * 179.97438 * 19 18 16 21 21 O 1.42902 * 110.45075 * 62.39715 * 20 19 18 22 22 C 1.54505 * 110.50936 * 184.99824 * 20 19 18 23 23 C 1.54480 * 104.05894 * 118.64878 * 22 20 19 24 24 O 1.44418 * 104.80539 * 23.97898 * 23 22 20 25 25 C 1.44433 * 105.27562 * 319.48851 * 24 23 22 26 26 H 0.97000 * 120.00329 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.96791 * 359.97316 * 11 10 9 28 28 H 1.08001 * 119.76981 * 179.97438 * 12 11 10 29 29 H 1.08000 * 119.80567 * 179.97438 * 13 12 11 30 30 H 1.07996 * 120.03350 * 179.97438 * 14 13 12 31 31 H 1.08994 * 109.47079 * 300.00198 * 19 18 16 32 32 H 1.09001 * 109.47089 * 60.00517 * 19 18 16 33 33 H 0.96696 * 114.00425 * 300.69758 * 21 20 19 34 34 H 1.09001 * 110.51160 * 237.28846 * 22 20 19 35 35 H 1.09002 * 110.51467 * 359.86962 * 22 20 19 36 36 H 1.09001 * 110.37046 * 142.80861 * 23 22 20 37 37 H 1.08998 * 110.37417 * 265.14410 * 23 22 20 38 38 H 1.08997 * 110.36789 * 281.68298 * 25 24 23 39 39 H 1.09001 * 110.37353 * 159.34629 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.7094 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0095 -1.2022 -0.0005 8 1 3.0895 -1.2023 -0.0010 9 16 1.1285 -2.7281 -0.0005 10 6 2.4708 -3.8565 -0.1722 11 6 3.7581 -3.3825 -0.4034 12 6 4.8067 -4.2681 -0.5368 13 6 4.5890 -5.6344 -0.4427 14 6 3.3214 -6.1242 -0.2152 15 6 2.2478 -5.2410 -0.0722 16 6 0.8912 -5.7574 0.1772 17 8 -0.0402 -4.9860 0.2962 18 8 0.6828 -7.0856 0.2733 19 6 -0.6795 -7.5228 0.5206 20 6 -0.7189 -9.0505 0.5971 21 8 0.0750 -9.5163 1.6902 22 6 -2.1751 -9.5482 0.7348 23 6 -2.3976 -10.4113 -0.5269 24 8 -1.0742 -10.8301 -0.9256 25 6 -0.2338 -9.6716 -0.7314 26 1 -0.4850 0.8400 0.0004 27 1 3.9364 -2.3199 -0.4784 28 1 5.8042 -3.8951 -0.7165 29 1 5.4177 -6.3187 -0.5492 30 1 3.1584 -7.1894 -0.1433 31 1 -1.0307 -7.1023 1.4628 32 1 -1.3230 -7.1834 -0.2911 33 1 1.0052 -9.2573 1.6392 34 1 -2.2889 -10.1517 1.6353 35 1 -2.8668 -8.7059 0.7507 36 1 -3.0145 -11.2781 -0.2897 37 1 -2.8616 -9.8186 -1.3152 38 1 -0.3660 -8.9654 -1.5511 39 1 0.8114 -9.9702 -0.6515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842386028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:09 Heat of formation + Delta-G solvation = -171.867305 kcal Electronic energy + Delta-G solvation = -24713.632036 eV Core-core repulsion = 20904.860080 eV Total energy + Delta-G solvation = -3808.771956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69398 -40.70985 -39.33394 -37.71000 -36.81388 -34.80955 -32.98352 -32.24987 -31.87341 -30.31188 -27.88587 -27.40070 -25.12354 -23.91531 -23.47300 -22.06302 -21.60719 -19.96249 -18.89394 -18.57898 -17.95970 -17.51411 -17.30109 -17.16791 -17.08340 -16.60125 -16.10308 -15.70946 -15.61935 -15.03978 -14.92299 -14.67637 -14.46303 -14.11198 -13.79821 -13.54677 -13.43919 -13.29951 -13.02472 -12.93928 -12.82345 -12.55518 -12.48624 -12.10859 -12.05413 -11.81281 -11.67879 -11.49465 -11.40774 -11.29318 -10.64620 -10.47119 -10.14156 -9.91312 -8.55842 -8.50325 -6.30442 -0.16968 0.50651 1.24985 1.35114 1.43171 1.49254 1.61186 1.64721 2.17495 2.82508 2.86499 2.95484 3.04378 3.16970 3.35463 3.53288 3.66940 3.91738 4.00769 4.06068 4.19295 4.24640 4.30026 4.41806 4.55967 4.60445 4.62032 4.67286 4.76870 4.78337 4.89489 4.96901 5.08372 5.25245 5.34717 5.44390 5.54145 5.64649 5.69059 6.06259 6.12766 6.65989 6.81104 6.92150 8.56004 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.003200 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.495341 B = 8747.213717 C = 9885.622249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.600 4.600 8 H 0.098 0.902 9 S 0.068 5.932 10 C -0.067 4.067 11 C -0.176 4.176 12 C -0.057 4.057 13 C -0.161 4.161 14 C -0.033 4.033 15 C -0.174 4.174 16 C 0.500 3.500 17 O -0.518 6.518 18 O -0.345 6.345 19 C 0.045 3.955 20 C 0.114 3.886 21 O -0.556 6.556 22 C -0.144 4.144 23 C 0.042 3.958 24 O -0.390 6.390 25 C 0.026 3.974 26 H 0.277 0.723 27 H 0.124 0.876 28 H 0.154 0.846 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -18.598 -0.977 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.816 3.184 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.747 4.747 8 H 0.116 0.884 9 S 0.328 5.672 10 C -0.184 4.184 11 C -0.201 4.201 12 C -0.078 4.078 13 C -0.184 4.184 14 C -0.052 4.052 15 C -0.185 4.185 16 C 0.347 3.653 17 O -0.409 6.409 18 O -0.262 6.262 19 C -0.030 4.030 20 C 0.073 3.927 21 O -0.365 6.365 22 C -0.182 4.182 23 C -0.035 4.035 24 O -0.309 6.309 25 C -0.051 4.051 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.181 0.819 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.246 0.754 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.297 -18.667 -0.705 18.726 hybrid contribution 1.498 2.200 -0.100 2.664 sum 2.795 -16.467 -0.805 16.722 Atomic orbital electron populations 1.70110 1.08036 1.29307 1.46329 1.26153 0.95862 1.03476 0.92515 0.84970 0.78896 0.76202 0.78378 1.17881 1.19514 1.19673 1.24249 0.97168 0.93891 1.59368 0.88394 1.84802 1.06482 0.95928 1.80028 1.22978 1.00194 0.96668 0.98598 1.21447 0.91872 1.01183 1.05601 1.21638 0.98717 0.93716 0.93706 1.21386 0.97436 0.95277 1.04272 1.21562 0.91095 0.99814 0.92734 1.18625 0.91410 0.91773 1.16741 1.21327 0.89674 0.80505 0.73825 1.90867 1.45017 1.57584 1.47386 1.86411 1.32543 1.24023 1.83248 1.23885 0.81141 0.95192 1.02735 1.22591 0.93731 0.88398 0.88030 1.86513 1.25857 1.78481 1.45638 1.23003 0.92322 1.01661 1.01166 1.23652 0.85340 0.99826 0.94638 1.89130 1.20096 1.34218 1.87471 1.24142 0.97154 0.88171 0.95628 0.91382 0.85815 0.82812 0.81454 0.81935 0.91026 0.90057 0.75364 0.88487 0.87895 0.86746 0.90660 0.91009 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.64 13.22 21.65 0.29 -53.35 16 2 C 0.03 1.44 5.49 84.88 0.47 1.91 16 3 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.60 -33.77 9.00 67.96 0.61 -33.16 16 8 H 0.10 5.17 4.98 -2.91 -0.01 5.16 16 9 S 0.07 3.75 18.56 -56.49 -1.05 2.70 16 10 C -0.07 -2.98 6.15 23.06 0.14 -2.84 16 11 C -0.18 -6.92 9.22 22.40 0.21 -6.71 16 12 C -0.06 -1.59 10.02 22.29 0.22 -1.37 16 13 C -0.16 -3.75 10.02 22.26 0.22 -3.53 16 14 C -0.03 -0.88 9.61 22.53 0.22 -0.66 16 15 C -0.17 -6.52 5.89 -19.96 -0.12 -6.64 16 16 C 0.50 18.99 7.87 70.20 0.55 19.54 16 17 O -0.52 -24.02 13.57 19.75 0.27 -23.75 16 18 O -0.34 -9.65 8.80 -54.11 -0.48 -10.13 16 19 C 0.04 1.11 4.33 71.98 0.31 1.42 16 20 C 0.11 2.27 1.26 -9.78 -0.01 2.25 16 21 O -0.56 -11.55 13.00 -144.78 -1.88 -13.44 16 22 C -0.14 -2.37 6.54 31.61 0.21 -2.16 16 23 C 0.04 0.64 7.63 72.49 0.55 1.19 16 24 O -0.39 -8.28 11.65 -148.98 -1.74 -10.01 16 25 C 0.03 0.50 6.65 72.48 0.48 0.98 16 26 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.12 5.25 5.04 -2.91 -0.01 5.23 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.16 3.10 7.61 -2.91 -0.02 3.08 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.40 6.11 8.74 -74.06 -0.65 5.46 16 34 H 0.10 1.60 8.00 -2.39 -0.02 1.58 16 35 H 0.10 1.45 7.73 -2.39 -0.02 1.44 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 39 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 Total: -1.00 -74.53 344.40 1.96 -72.58 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.45 Total: 20.65 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.07 Total: -29.77 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.29 Total: -53.35 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -3.83 Total: -57.33 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.05 Total: 2.70 kcal Total: -74.53 1.96 -72.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842386028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.292 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds