Wall clock time and date at job start Tue Mar 31 2020 14:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48501 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47331 * 299.99970 * 3 2 1 6 6 H 1.48498 * 109.46868 * 60.00238 * 3 2 1 7 7 C 1.37872 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00273 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.91057 * 62.44797 * 9 7 2 11 11 C 1.55153 * 111.00882 * 186.34991 * 9 7 2 12 12 C 1.54334 * 103.02144 * 153.38109 * 11 9 7 13 13 N 1.47021 * 107.26713 * 338.14323 * 12 11 9 14 14 C 1.34772 * 125.65172 * 178.84493 * 13 12 11 15 15 O 1.21549 * 120.00370 * 185.24901 * 14 13 12 16 16 C 1.47858 * 119.99709 * 5.24756 * 14 13 12 17 17 C 1.39572 * 120.13061 * 301.87380 * 16 14 13 18 18 C 1.38165 * 119.82481 * 179.72334 * 17 16 14 19 19 F 1.35095 * 119.95673 * 179.97438 * 18 17 16 20 20 C 1.38598 * 120.09323 * 359.97438 * 18 17 16 21 21 C 1.38304 * 120.26539 * 0.02562 * 20 18 17 22 22 C 1.37980 * 120.17482 * 0.02562 * 21 20 18 23 23 N 1.48024 * 120.04748 * 180.02562 * 22 21 20 24 24 O 1.21793 * 120.00039 * 1.79213 * 23 22 21 25 25 O 1.21803 * 119.99957 * 181.78876 * 23 22 21 26 26 C 1.47425 * 108.70085 * 358.58467 * 13 12 11 27 27 H 0.97002 * 120.00054 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00733 * 297.55269 * 10 9 7 29 29 H 1.08998 * 110.72521 * 271.94648 * 11 9 7 30 30 H 1.09005 * 110.71583 * 35.04120 * 11 9 7 31 31 H 1.08997 * 109.99325 * 218.66919 * 12 11 9 32 32 H 1.09006 * 109.77426 * 97.50013 * 12 11 9 33 33 H 1.07999 * 120.08712 * 359.74596 * 17 16 14 34 34 H 1.07999 * 119.87017 * 180.02562 * 20 18 17 35 35 H 1.08001 * 119.91204 * 180.02562 * 21 20 18 36 36 H 1.09000 * 110.36850 * 143.19296 * 26 13 12 37 37 H 1.08999 * 110.37001 * 265.40713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4609 -2.6319 -1.1838 11 6 2.2198 -3.7006 0.1590 12 6 1.3304 -4.7801 0.8113 13 7 0.2073 -4.0871 1.4593 14 6 -0.8053 -4.6809 2.1214 15 8 -1.7330 -4.0147 2.5373 16 6 -0.7877 -6.1428 2.3420 17 6 -0.7193 -7.0147 1.2542 18 6 -0.6974 -8.3796 1.4678 19 9 -0.6317 -9.2259 0.4169 20 6 -0.7428 -8.8817 2.7588 21 6 -0.8107 -8.0212 3.8395 22 6 -0.8342 -6.6563 3.6388 23 7 -0.9063 -5.7379 4.7974 24 8 -0.9120 -6.1857 5.9300 25 8 -0.9599 -4.5344 4.6181 26 6 0.3754 -2.6348 1.2701 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2255 -1.9571 -1.2762 29 1 2.5847 -4.0335 -0.8126 30 1 3.0519 -3.4407 0.8135 31 1 1.9025 -5.3348 1.5551 32 1 0.9550 -5.4601 0.0465 33 1 -0.6831 -6.6235 0.2482 34 1 -0.7251 -9.9492 2.9217 35 1 -0.8454 -8.4187 4.8431 36 1 -0.5924 -2.1576 1.1164 37 1 0.8815 -2.1962 2.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:59 Heat of formation + Delta-G solvation = -89.490490 kcal Electronic energy + Delta-G solvation = -28055.271738 eV Core-core repulsion = 23716.151483 eV Total energy + Delta-G solvation = -4339.120254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.63434 -42.20037 -40.16962 -38.75973 -37.27626 -36.34181 -34.41350 -32.28236 -32.22579 -31.92989 -30.18321 -27.96479 -26.67137 -25.51345 -24.35564 -22.87175 -22.42865 -20.20181 -19.72594 -19.11241 -18.62150 -17.82410 -17.45905 -17.20838 -17.10120 -16.42356 -16.25117 -15.56172 -15.15776 -14.92556 -14.80231 -14.37043 -14.15240 -14.05663 -13.35038 -13.10227 -13.03049 -12.83911 -12.42447 -12.01024 -11.72461 -11.61600 -11.40047 -11.09149 -11.00648 -10.96388 -10.86929 -10.70217 -10.49646 -10.25951 -9.98680 -9.76741 -9.62221 -9.44828 -8.74466 -8.46114 -7.94338 -6.31866 -4.41840 -0.49320 0.23103 1.12356 1.31010 2.51954 2.88501 3.11430 3.19688 3.28313 3.31018 3.49518 3.88730 4.09057 4.22309 4.26802 4.34302 4.69666 4.94431 5.01499 5.14316 5.16861 5.23900 5.29876 5.47957 5.65077 5.82034 5.87498 6.03373 6.35367 6.37952 6.61481 6.77469 6.80838 7.17557 7.27150 7.68872 7.69985 7.93549 7.97289 8.41618 8.62344 9.23052 9.32823 10.75405 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.004037 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.178866 B = 6934.258984 C = 7975.756967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.117 4.117 12 C 0.099 3.901 13 N -0.597 5.597 14 C 0.556 3.444 15 O -0.498 6.498 16 C -0.015 4.015 17 C -0.129 4.129 18 C 0.154 3.846 19 F -0.118 7.118 20 C -0.146 4.146 21 C -0.028 4.028 22 C -0.027 4.027 23 N 0.020 4.980 24 O -0.174 6.174 25 O -0.103 6.103 26 C 0.097 3.903 27 H 0.271 0.729 28 H 0.382 0.618 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.092 0.908 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -17.883 3.354 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.025 4.025 13 N -0.329 5.329 14 C 0.340 3.660 15 O -0.373 6.373 16 C -0.020 4.020 17 C -0.149 4.149 18 C 0.134 3.866 19 F -0.096 7.096 20 C -0.165 4.165 21 C -0.047 4.047 22 C -0.111 4.111 23 N 0.542 4.458 24 O -0.383 6.383 25 O -0.329 6.329 26 C -0.023 4.023 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.184 0.816 34 H 0.180 0.820 35 H 0.185 0.815 36 H 0.110 0.890 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.060 -18.465 2.966 18.701 hybrid contribution 0.044 1.296 0.227 1.316 sum -0.016 -17.169 3.193 17.463 Atomic orbital electron populations 1.69709 1.05996 1.27971 1.49268 1.25071 0.95039 0.99809 0.93191 0.86346 0.80024 0.82705 0.77831 1.19592 1.20743 1.20668 1.21464 0.93696 0.89906 1.52702 0.91400 1.19626 0.86534 0.91674 0.81264 1.86093 1.51546 1.57239 1.44316 1.22623 0.97581 0.94980 1.00254 1.22148 0.88223 0.96323 0.95764 1.48664 1.22303 1.10550 1.51426 1.17287 0.83637 0.84831 0.80223 1.90875 1.33734 1.63245 1.49402 1.20011 0.94376 0.96937 0.90631 1.21399 1.01971 0.90823 1.00663 1.17779 0.97139 0.87342 0.84361 1.91603 1.92707 1.69859 1.55396 1.21245 1.03593 1.01982 0.89699 1.20828 0.92932 0.89242 1.01716 1.21128 1.13681 0.90553 0.85734 1.43439 0.98594 1.02067 1.01692 1.94491 1.54578 1.81290 1.07966 1.94790 1.50354 0.96007 1.91773 1.23418 1.03245 0.75455 1.00230 0.91926 0.76761 0.90466 0.90183 0.92861 0.92055 0.81606 0.81991 0.81488 0.88983 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 10.69 55.43 0.59 -22.62 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -13.57 8.27 -34.44 -0.28 -13.86 16 8 H 0.07 1.68 7.79 -52.48 -0.41 1.27 16 9 C 0.25 5.74 0.87 -89.63 -0.08 5.66 16 10 O -0.58 -14.05 13.16 -35.23 -0.46 -14.51 16 11 C -0.12 -2.17 6.13 -24.89 -0.15 -2.32 16 12 C 0.10 1.61 6.00 -3.06 -0.02 1.59 16 13 N -0.60 -11.74 3.33 -171.62 -0.57 -12.31 16 14 C 0.56 10.83 5.91 -12.33 -0.07 10.76 16 15 O -0.50 -11.55 14.93 -18.91 -0.28 -11.83 16 16 C -0.01 -0.22 5.20 -104.97 -0.55 -0.76 16 17 C -0.13 -1.48 8.53 -39.11 -0.33 -1.81 16 18 C 0.15 1.38 7.29 -39.48 -0.29 1.10 16 19 F -0.12 -1.04 17.26 2.25 0.04 -1.00 16 20 C -0.15 -1.05 10.02 -39.42 -0.40 -1.44 16 21 C -0.03 -0.26 9.54 -39.65 -0.38 -0.64 16 22 C -0.03 -0.37 6.88 -79.55 -0.55 -0.92 16 23 N 0.02 0.34 4.45 34.16 0.15 0.49 16 24 O -0.17 -2.79 18.45 -29.46 -0.54 -3.33 16 25 O -0.10 -2.11 14.92 -37.13 -0.55 -2.67 16 26 C 0.10 2.24 5.41 -2.53 -0.01 2.23 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.38 9.54 7.57 45.56 0.34 9.88 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.88 6.55 -51.93 -0.34 0.54 16 33 H 0.17 1.81 7.00 -52.49 -0.37 1.44 16 34 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.17 1.14 7.61 -52.49 -0.40 0.74 16 36 H 0.09 2.40 7.28 -51.93 -0.38 2.02 16 37 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -30.04 325.89 -7.73 -37.77 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.79 Total: 8.80 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -3.20 Total: 1.34 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.17 Total: -34.44 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.84 Total: -32.34 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.04 -7.73 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.725 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds