Wall clock time and date at job start Tue Mar 31 2020 14:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48501 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47331 * 299.99970 * 3 2 1 6 6 H 1.48498 * 109.46868 * 60.00238 * 3 2 1 7 7 C 1.37872 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00273 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.91057 * 62.44797 * 9 7 2 11 11 C 1.55153 * 111.00882 * 186.34991 * 9 7 2 12 12 C 1.54334 * 103.02144 * 153.38109 * 11 9 7 13 13 N 1.47021 * 107.26713 * 338.14323 * 12 11 9 14 14 C 1.34772 * 125.65172 * 178.84493 * 13 12 11 15 15 O 1.21549 * 120.00370 * 185.24901 * 14 13 12 16 16 C 1.47858 * 119.99709 * 5.24756 * 14 13 12 17 17 C 1.39572 * 120.13061 * 301.87380 * 16 14 13 18 18 C 1.38165 * 119.82481 * 179.72334 * 17 16 14 19 19 F 1.35095 * 119.95673 * 179.97438 * 18 17 16 20 20 C 1.38598 * 120.09323 * 359.97438 * 18 17 16 21 21 C 1.38304 * 120.26539 * 0.02562 * 20 18 17 22 22 C 1.37980 * 120.17482 * 0.02562 * 21 20 18 23 23 N 1.48024 * 120.04748 * 180.02562 * 22 21 20 24 24 O 1.21793 * 120.00039 * 1.79213 * 23 22 21 25 25 O 1.21803 * 119.99957 * 181.78876 * 23 22 21 26 26 C 1.47425 * 108.70085 * 358.58467 * 13 12 11 27 27 H 0.97002 * 120.00054 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00733 * 297.55269 * 10 9 7 29 29 H 1.08998 * 110.72521 * 271.94648 * 11 9 7 30 30 H 1.09005 * 110.71583 * 35.04120 * 11 9 7 31 31 H 1.08997 * 109.99325 * 218.66919 * 12 11 9 32 32 H 1.09006 * 109.77426 * 97.50013 * 12 11 9 33 33 H 1.07999 * 120.08712 * 359.74596 * 17 16 14 34 34 H 1.07999 * 119.87017 * 180.02562 * 20 18 17 35 35 H 1.08001 * 119.91204 * 180.02562 * 21 20 18 36 36 H 1.09000 * 110.36850 * 143.19296 * 26 13 12 37 37 H 1.08999 * 110.37001 * 265.40713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4609 -2.6319 -1.1838 11 6 2.2198 -3.7006 0.1590 12 6 1.3304 -4.7801 0.8113 13 7 0.2073 -4.0871 1.4593 14 6 -0.8053 -4.6809 2.1214 15 8 -1.7330 -4.0147 2.5373 16 6 -0.7877 -6.1428 2.3420 17 6 -0.7193 -7.0147 1.2542 18 6 -0.6974 -8.3796 1.4678 19 9 -0.6317 -9.2259 0.4169 20 6 -0.7428 -8.8817 2.7588 21 6 -0.8107 -8.0212 3.8395 22 6 -0.8342 -6.6563 3.6388 23 7 -0.9063 -5.7379 4.7974 24 8 -0.9120 -6.1857 5.9300 25 8 -0.9599 -4.5344 4.6181 26 6 0.3754 -2.6348 1.2701 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2255 -1.9571 -1.2762 29 1 2.5847 -4.0335 -0.8126 30 1 3.0519 -3.4407 0.8135 31 1 1.9025 -5.3348 1.5551 32 1 0.9550 -5.4601 0.0465 33 1 -0.6831 -6.6235 0.2482 34 1 -0.7251 -9.9492 2.9217 35 1 -0.8454 -8.4187 4.8431 36 1 -0.5924 -2.1576 1.1164 37 1 0.8815 -2.1962 2.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:58 Heat of formation + Delta-G solvation = -109.682225 kcal Electronic energy + Delta-G solvation = -28056.147317 eV Core-core repulsion = 23716.151483 eV Total energy + Delta-G solvation = -4339.995833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.35490 -43.40325 -41.48934 -39.98171 -38.86457 -37.63312 -36.15519 -34.25494 -33.25234 -32.87081 -31.72026 -29.65245 -27.94018 -27.09107 -25.58336 -24.10310 -23.61299 -21.60132 -21.33818 -20.25182 -19.73010 -19.24268 -18.90144 -18.66513 -18.11570 -17.49450 -17.26462 -16.98103 -16.71287 -16.37008 -16.15699 -15.81159 -15.15999 -14.88161 -14.82611 -14.74297 -14.47800 -13.92831 -13.82632 -13.54981 -13.37294 -12.97175 -12.88484 -12.74125 -12.58428 -12.43409 -12.31660 -12.25234 -12.16104 -12.13609 -11.31119 -11.21625 -10.74420 -10.68834 -10.57318 -10.34603 -9.59771 -8.26914 -6.44097 -1.55555 -0.58507 0.01603 0.23242 1.34127 1.39935 1.43713 1.54121 1.70249 1.93886 2.37071 2.62283 2.94856 2.99570 3.09243 3.40563 3.54697 3.67554 3.71536 4.03520 4.12422 4.19298 4.27561 4.37035 4.46348 4.48372 4.62096 4.68015 4.99486 5.01034 5.02372 5.18255 5.22489 5.33098 5.42830 5.73201 6.03386 6.36422 6.43675 6.64389 6.92977 7.23819 7.32799 8.78610 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.004037 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.178866 B = 6934.258984 C = 7975.756967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.236 3.764 10 O -0.585 6.585 11 C -0.111 4.111 12 C 0.101 3.899 13 N -0.604 5.604 14 C 0.553 3.447 15 O -0.551 6.551 16 C -0.038 4.038 17 C -0.127 4.127 18 C 0.172 3.828 19 F -0.109 7.109 20 C -0.108 4.108 21 C -0.009 4.009 22 C -0.046 4.046 23 N 0.022 4.978 24 O -0.117 6.117 25 O -0.220 6.220 26 C 0.112 3.888 27 H 0.269 0.731 28 H 0.374 0.626 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.216 0.784 35 H 0.202 0.798 36 H 0.050 0.950 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -22.657 3.500 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.211 1.211 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.195 3.805 10 O -0.392 6.392 11 C -0.149 4.149 12 C -0.020 4.020 13 N -0.336 5.336 14 C 0.340 3.660 15 O -0.429 6.429 16 C -0.043 4.043 17 C -0.147 4.147 18 C 0.152 3.848 19 F -0.087 7.087 20 C -0.127 4.127 21 C -0.027 4.027 22 C -0.130 4.130 23 N 0.539 4.461 24 O -0.347 6.347 25 O -0.418 6.418 26 C -0.011 4.011 27 H 0.078 0.922 28 H 0.222 0.778 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.184 0.816 34 H 0.232 0.768 35 H 0.219 0.781 36 H 0.068 0.932 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.338 -23.072 2.966 23.301 hybrid contribution -0.402 2.442 0.266 2.489 sum 0.936 -20.630 3.232 20.903 Atomic orbital electron populations 1.69838 1.07206 1.28390 1.49998 1.25817 0.95712 1.02859 0.92994 0.85426 0.79236 0.79022 0.77476 1.18650 1.20442 1.21059 1.21824 0.94015 0.91182 1.52491 0.91186 1.19813 0.87030 0.93199 0.80436 1.86078 1.51392 1.56827 1.44924 1.22621 0.97115 0.93578 1.01566 1.22317 0.87071 0.95733 0.96899 1.48671 1.23623 1.09203 1.52115 1.18004 0.82370 0.87110 0.78558 1.90821 1.35725 1.65413 1.50973 1.19491 0.98615 0.93788 0.92368 1.21360 1.01820 0.91896 0.99590 1.17741 0.95635 0.86104 0.85370 1.91644 1.92377 1.69266 1.55399 1.21783 0.99318 1.04002 0.87604 1.21314 0.90641 0.86651 1.04117 1.21364 1.16359 0.91497 0.83788 1.43907 0.97490 1.02164 1.02589 1.94399 1.50304 1.80828 1.09199 1.94847 1.56865 0.97879 1.92244 1.22879 1.00684 0.77934 0.99579 0.92153 0.77767 0.88891 0.89421 0.89862 0.89531 0.81563 0.76753 0.78130 0.93177 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.45 10.69 21.45 0.23 -50.22 16 2 C 0.03 1.44 5.29 84.65 0.45 1.88 16 3 Si 0.96 42.11 29.54 68.60 2.03 44.14 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.56 -28.89 8.27 25.60 0.21 -28.68 16 8 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 9 C 0.24 11.24 0.87 -10.15 -0.01 11.23 16 10 O -0.58 -29.20 13.16 -148.98 -1.96 -31.16 16 11 C -0.11 -4.07 6.13 31.78 0.19 -3.88 16 12 C 0.10 3.22 6.00 86.73 0.52 3.74 16 13 N -0.60 -24.95 3.33 -815.17 -2.71 -27.66 16 14 C 0.55 22.88 5.91 86.79 0.51 23.39 16 15 O -0.55 -28.19 14.93 19.30 0.29 -27.91 16 16 C -0.04 -1.11 5.20 -20.09 -0.10 -1.21 16 17 C -0.13 -2.57 8.53 22.57 0.19 -2.38 16 18 C 0.17 2.19 7.29 22.34 0.16 2.35 16 19 F -0.11 -1.33 17.26 44.97 0.78 -0.55 16 20 C -0.11 -0.80 10.02 22.37 0.22 -0.57 16 21 C -0.01 -0.11 9.54 22.22 0.21 0.10 16 22 C -0.05 -1.19 6.88 36.63 0.25 -0.93 16 23 N 0.02 0.77 4.45 -45.85 -0.20 0.56 16 24 O -0.12 -3.55 18.45 18.90 0.35 -3.20 16 25 O -0.22 -9.83 14.92 26.22 0.39 -9.44 16 26 C 0.11 5.59 5.41 86.85 0.47 6.06 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.37 19.80 7.57 -74.06 -0.56 19.23 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.09 3.04 8.03 -2.38 -0.02 3.02 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.31 6.55 -2.38 -0.02 2.29 16 33 H 0.17 3.30 7.00 -2.91 -0.02 3.28 16 34 H 0.22 -0.44 8.06 -2.91 -0.02 -0.47 16 35 H 0.20 1.34 7.61 -2.91 -0.02 1.32 16 36 H 0.05 2.88 7.28 -2.39 -0.02 2.87 16 37 H 0.04 2.21 8.03 -2.39 -0.02 2.19 16 Total: -1.00 -74.84 325.89 3.06 -71.78 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.59 Total: 22.56 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 3.29 Total: 11.11 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -2.69 Total: -77.32 kcal Atomic # 8 Polarization: -70.78 SS G_CDS: -0.93 Total: -71.71 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.78 Total: -0.55 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -74.84 3.06 -71.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.903 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds