Wall clock time and date at job start Tue Mar 31 2020 14:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46990 * 299.99867 * 3 2 1 6 6 H 1.48500 * 109.47123 * 59.99528 * 3 2 1 7 7 C 1.37882 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99716 * 359.97438 * 7 2 1 10 10 O 1.42895 * 110.88986 * 303.88116 * 9 7 2 11 11 C 1.55153 * 111.00183 * 179.97438 * 9 7 2 12 12 C 1.54324 * 102.94363 * 206.38715 * 11 9 7 13 13 N 1.47027 * 107.26953 * 22.19717 * 12 11 9 14 14 C 1.34772 * 125.64606 * 181.02691 * 13 12 11 15 15 O 1.21554 * 119.99606 * 184.88068 * 14 13 12 16 16 C 1.47852 * 120.00249 * 4.87022 * 14 13 12 17 17 C 1.39565 * 120.13567 * 304.06192 * 16 14 13 18 18 C 1.38168 * 119.82593 * 179.70328 * 17 16 14 19 19 F 1.35103 * 119.95587 * 180.29647 * 18 17 16 20 20 C 1.38599 * 120.09219 * 0.52703 * 18 17 16 21 21 C 1.38295 * 120.26349 * 359.49111 * 20 18 17 22 22 C 1.37986 * 120.17771 * 0.23350 * 21 20 18 23 23 N 1.48019 * 120.04869 * 180.02562 * 22 21 20 24 24 O 1.21804 * 120.00291 * 353.39404 * 23 22 21 25 25 O 1.21804 * 120.00187 * 173.39316 * 23 22 21 26 26 C 1.47428 * 108.70183 * 1.28232 * 13 12 11 27 27 H 0.96996 * 119.99540 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99697 * 56.11549 * 10 9 7 29 29 H 1.09005 * 110.71959 * 88.02596 * 11 9 7 30 30 H 1.08998 * 110.72645 * 324.75131 * 11 9 7 31 31 H 1.08999 * 109.88431 * 262.77603 * 12 11 9 32 32 H 1.08998 * 110.01340 * 141.68132 * 12 11 9 33 33 H 1.07999 * 120.08550 * 359.97438 * 17 16 14 34 34 H 1.07993 * 119.86316 * 179.76709 * 20 18 17 35 35 H 1.07998 * 119.90980 * 180.25101 * 21 20 18 36 36 H 1.09005 * 110.35922 * 94.48061 * 26 13 12 37 37 H 1.08993 * 110.36808 * 216.80527 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.3522 -2.5676 1.1104 11 6 2.2274 -3.7050 0.0015 12 6 1.3973 -4.8218 -0.6658 13 7 0.3453 -4.1691 -1.4589 14 6 -0.6019 -4.8018 -2.1793 15 8 -1.3698 -4.1606 -2.8697 16 6 -0.7068 -6.2758 -2.1299 17 6 0.3978 -7.0679 -2.4468 18 6 0.2944 -8.4446 -2.3926 19 9 1.3637 -9.2138 -2.6930 20 6 -0.9062 -9.0378 -2.0351 21 6 -2.0032 -8.2566 -1.7208 22 6 -1.9106 -6.8806 -1.7658 23 7 -3.0864 -6.0472 -1.4282 24 8 -4.1674 -6.5716 -1.2280 25 8 -2.9730 -4.8369 -1.3507 26 6 0.5020 -2.7080 -1.3406 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2773 -1.8347 1.1522 29 1 2.4982 -3.9822 1.0203 30 1 3.1167 -3.4812 -0.5877 31 1 0.9466 -5.4554 0.0980 32 1 2.0337 -5.4215 -1.3165 33 1 1.3322 -6.6058 -2.7293 34 1 -0.9839 -10.1143 -1.9976 35 1 -2.9347 -8.7248 -1.4391 36 1 1.0925 -2.3214 -2.1713 37 1 -0.4737 -2.2231 -1.3095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:01 Heat of formation + Delta-G solvation = -110.342919 kcal Electronic energy + Delta-G solvation = -28122.435479 eV Core-core repulsion = 23782.410996 eV Total energy + Delta-G solvation = -4340.024483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.34567 -43.39428 -41.48673 -39.96575 -38.86142 -37.63341 -36.19318 -34.17303 -33.26820 -32.86144 -31.71844 -29.68022 -27.94231 -27.08242 -25.59782 -24.07235 -23.61493 -21.57940 -21.34856 -20.24772 -19.72731 -19.27556 -18.93372 -18.65727 -18.03984 -17.56559 -17.18578 -16.96848 -16.68296 -16.50127 -16.12352 -15.73465 -15.12853 -14.94795 -14.84102 -14.72169 -14.45092 -13.95801 -13.81651 -13.51888 -13.34956 -12.95586 -12.88819 -12.75299 -12.59818 -12.35460 -12.32404 -12.25915 -12.18125 -12.11874 -11.35967 -11.22309 -10.74532 -10.67224 -10.56741 -10.34817 -9.59188 -8.26538 -6.44706 -1.55349 -0.58624 0.01184 0.24516 1.31634 1.41408 1.44325 1.55335 1.69858 1.97926 2.37352 2.61870 2.94102 2.99576 3.10104 3.40306 3.54453 3.68754 3.72526 4.06645 4.11374 4.23615 4.26072 4.36459 4.46061 4.49067 4.62122 4.69940 4.97303 5.01134 5.02705 5.19469 5.22461 5.35123 5.42222 5.74950 6.00842 6.35133 6.43614 6.64492 6.91928 7.28171 7.36091 8.79287 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.004050 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.822832 B = 6912.238698 C = 7910.935978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.024 3.976 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.232 3.768 10 O -0.593 6.593 11 C -0.111 4.111 12 C 0.101 3.899 13 N -0.600 5.600 14 C 0.555 3.445 15 O -0.558 6.558 16 C -0.040 4.040 17 C -0.124 4.124 18 C 0.172 3.828 19 F -0.107 7.107 20 C -0.109 4.109 21 C -0.011 4.011 22 C -0.048 4.048 23 N 0.022 4.978 24 O -0.121 6.121 25 O -0.221 6.221 26 C 0.108 3.892 27 H 0.270 0.730 28 H 0.377 0.623 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.215 0.785 35 H 0.199 0.801 36 H 0.054 0.946 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 -22.611 -3.696 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.093 0.907 9 C 0.191 3.809 10 O -0.402 6.402 11 C -0.149 4.149 12 C -0.020 4.020 13 N -0.332 5.332 14 C 0.342 3.658 15 O -0.437 6.437 16 C -0.045 4.045 17 C -0.144 4.144 18 C 0.152 3.848 19 F -0.085 7.085 20 C -0.128 4.128 21 C -0.030 4.030 22 C -0.132 4.132 23 N 0.538 4.462 24 O -0.350 6.350 25 O -0.419 6.419 26 C -0.015 4.015 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.232 0.768 35 H 0.216 0.784 36 H 0.073 0.927 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.781 -23.026 -4.149 23.701 hybrid contribution -0.628 2.422 -0.136 2.506 sum 3.153 -20.604 -4.285 21.280 Atomic orbital electron populations 1.69711 1.07416 1.28531 1.50277 1.25885 0.95667 1.03096 0.93010 0.85365 0.79250 0.78737 0.77420 1.18355 1.20966 1.20702 1.21877 0.94172 0.90993 1.52284 0.90691 1.19921 0.86146 0.93549 0.81239 1.86044 1.51271 1.52706 1.50167 1.22655 0.97543 0.93021 1.01679 1.22351 0.88834 0.96135 0.94722 1.48631 1.29329 1.08813 1.46448 1.17985 0.80208 0.87066 0.80561 1.90810 1.42756 1.67606 1.42489 1.19526 0.92947 0.93642 0.98387 1.21411 0.98722 0.92630 1.01613 1.17710 0.84930 0.87371 0.94776 1.91650 1.53302 1.74069 1.89463 1.21779 0.88430 1.04154 0.98454 1.21300 1.02567 0.87190 0.91949 1.21420 0.85276 0.92690 1.13790 1.43926 1.02672 1.01797 0.97762 1.94391 1.14868 1.75609 1.50124 1.94840 1.91984 0.96691 1.58414 1.22997 1.00132 0.77738 1.00612 0.92006 0.77180 0.89528 0.88360 0.91538 0.87801 0.80559 0.76815 0.78428 0.92733 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.41 10.72 21.45 0.23 -51.18 16 2 C 0.02 1.26 5.30 84.66 0.45 1.71 16 3 Si 0.97 41.83 29.54 68.60 2.03 43.85 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.56 -28.61 8.25 25.60 0.21 -28.40 16 8 H 0.07 3.67 7.76 -2.91 -0.02 3.65 16 9 C 0.23 11.24 0.89 -10.07 -0.01 11.23 16 10 O -0.59 -31.66 13.19 -148.98 -1.97 -33.63 16 11 C -0.11 -4.04 6.12 31.78 0.19 -3.85 16 12 C 0.10 3.18 5.89 86.73 0.51 3.69 16 13 N -0.60 -24.69 3.32 -814.73 -2.71 -27.40 16 14 C 0.55 22.94 5.87 86.79 0.51 23.45 16 15 O -0.56 -28.46 15.12 19.07 0.29 -28.17 16 16 C -0.04 -1.18 5.24 -20.09 -0.11 -1.29 16 17 C -0.12 -2.32 8.53 22.57 0.19 -2.13 16 18 C 0.17 2.05 7.29 22.34 0.16 2.21 16 19 F -0.11 -1.15 17.26 44.97 0.78 -0.37 16 20 C -0.11 -0.85 10.02 22.37 0.22 -0.62 16 21 C -0.01 -0.16 9.54 22.22 0.21 0.05 16 22 C -0.05 -1.30 6.86 36.63 0.25 -1.05 16 23 N 0.02 0.83 4.45 -45.85 -0.20 0.63 16 24 O -0.12 -3.97 18.47 18.88 0.35 -3.63 16 25 O -0.22 -10.55 15.03 26.15 0.39 -10.15 16 26 C 0.11 5.36 5.62 86.93 0.49 5.85 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.38 21.59 6.93 -74.05 -0.51 21.08 16 29 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.10 3.18 8.01 -2.39 -0.02 3.16 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.10 2.27 6.50 -2.39 -0.02 2.26 16 33 H 0.18 2.76 6.82 -2.91 -0.02 2.74 16 34 H 0.22 -0.36 8.06 -2.91 -0.02 -0.38 16 35 H 0.20 1.66 7.62 -2.91 -0.02 1.64 16 36 H 0.05 2.73 8.04 -2.38 -0.02 2.71 16 37 H 0.04 2.31 7.69 -2.39 -0.02 2.29 16 Total: -1.00 -77.39 325.87 3.11 -74.27 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.64 Total: 24.91 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 3.29 Total: 10.85 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.68 Total: -77.95 kcal Atomic # 8 Polarization: -74.64 SS G_CDS: -0.94 Total: -75.58 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.78 Total: -0.37 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -77.39 3.11 -74.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.068 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds