Wall clock time and date at job start Tue Mar 31 2020 13:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46764 * 274.66074 * 3 2 1 5 5 H 1.48498 * 109.46896 * 34.66043 * 3 2 1 6 6 H 1.48502 * 109.47097 * 154.66342 * 3 2 1 7 7 C 1.39945 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00054 * 162.23152 * 7 2 1 9 9 C 1.41395 * 119.99949 * 342.23141 * 7 2 1 10 10 C 1.40720 * 120.24256 * 155.29109 * 9 7 2 11 11 C 1.37619 * 119.74417 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24911 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.74933 * 180.02562 * 12 11 10 14 14 O 1.45200 * 109.47211 * 90.00209 * 13 12 11 15 15 C 1.34231 * 117.00262 * 180.02562 * 14 13 12 16 16 O 1.20831 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00136 * 179.97438 * 15 14 13 18 18 H 1.09004 * 110.85042 * 328.42937 * 17 15 14 19 19 C 1.55411 * 110.95210 * 91.93065 * 17 15 14 20 20 C 1.53879 * 106.73607 * 160.51784 * 19 17 15 21 21 C 1.54163 * 108.70726 * 312.90862 * 20 19 17 22 22 S 1.82917 * 105.08525 * 27.91125 * 21 20 19 23 23 O 1.42103 * 109.35700 * 111.27211 * 22 21 20 24 24 O 1.42100 * 109.35466 * 244.34422 * 22 21 20 25 25 C 1.38637 * 120.50064 * 0.29785 * 12 11 10 26 26 C 1.37617 * 120.24941 * 359.44419 * 25 12 11 27 27 H 0.96997 * 120.00266 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12607 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87674 * 179.97438 * 11 10 9 30 30 H 1.08993 * 109.47438 * 329.99967 * 13 12 11 31 31 H 1.09009 * 109.47321 * 209.99773 * 13 12 11 32 32 H 1.08998 * 109.89563 * 41.23600 * 19 17 15 33 33 H 1.08997 * 110.08546 * 279.90882 * 19 17 15 34 34 H 1.08996 * 109.64180 * 193.05465 * 20 19 17 35 35 H 1.09004 * 109.64366 * 72.76017 * 20 19 17 36 36 H 1.08988 * 110.31866 * 269.00681 * 21 20 19 37 37 H 1.08998 * 110.40532 * 146.85378 * 21 20 19 38 38 H 1.08000 * 119.87739 * 179.70592 * 25 12 11 39 39 H 1.08001 * 120.13181 * 180.27279 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1033 -1.3955 5 1 1.4923 2.6222 0.7962 6 1 3.5855 1.4138 0.5991 7 6 2.0079 -1.2119 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3748 10 6 1.8218 -3.6494 -0.0898 11 6 1.1748 -4.8062 0.2804 12 6 0.0641 -4.7509 1.1082 13 6 -0.6355 -6.0246 1.5070 14 8 -0.0478 -6.5364 2.7321 15 6 -0.5607 -7.6747 3.2250 16 8 -1.4711 -8.2250 2.6519 17 6 -0.0013 -8.2664 4.4931 18 1 1.0624 -8.0475 4.5870 19 6 -0.7808 -7.7544 5.7363 20 6 -0.4952 -8.7461 6.8777 21 6 -0.6758 -10.1807 6.3431 22 16 -0.3018 -10.0733 4.5558 23 8 0.9116 -10.7621 4.2863 24 8 -1.4716 -10.3823 3.8105 25 6 -0.4114 -3.5322 1.5672 26 6 0.2230 -2.3630 1.2142 27 1 -0.4850 0.8400 -0.0004 28 1 2.6867 -3.6947 -0.7351 29 1 1.5337 -5.7607 -0.0752 30 1 -0.5239 -6.7641 0.7140 31 1 -1.6943 -5.8224 1.6689 32 1 -1.8490 -7.7311 5.5206 33 1 -0.4340 -6.7584 6.0115 34 1 -1.1908 -8.5704 7.6983 35 1 0.5272 -8.6129 7.2316 36 1 -1.7019 -10.5150 6.4957 37 1 0.0201 -10.8601 6.8352 38 1 -1.2803 -3.5004 2.2078 39 1 -0.1464 -1.4150 1.5765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846943218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:37 Heat of formation + Delta-G solvation = -158.851893 kcal Electronic energy + Delta-G solvation = -24406.683616 eV Core-core repulsion = 20598.476051 eV Total energy + Delta-G solvation = -3808.207565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68352 -39.55535 -38.23683 -37.70893 -37.32398 -36.87263 -35.71380 -32.74077 -31.59680 -31.24832 -28.98113 -26.95424 -25.57217 -23.07597 -22.97240 -22.26691 -21.85168 -19.86142 -19.29807 -19.16952 -18.25881 -17.57033 -17.49344 -17.16309 -16.95926 -16.46406 -15.89980 -15.63283 -15.59269 -15.31318 -14.93834 -14.51614 -14.20457 -14.04366 -13.88901 -13.58360 -13.31771 -13.28622 -13.21652 -13.10244 -13.07086 -12.94589 -12.79477 -12.44398 -12.24202 -11.98098 -11.77496 -11.73092 -11.68656 -11.47828 -11.33313 -11.28637 -11.05110 -9.46757 -9.37044 -8.71230 -6.41762 -1.14220 0.67725 0.90778 1.08315 1.37359 1.40318 1.45986 1.53430 1.71280 2.18715 2.59052 2.67665 3.02570 3.22240 3.47217 3.65918 3.72340 3.81502 3.99129 4.02325 4.04987 4.09241 4.43516 4.44830 4.50411 4.51807 4.72133 4.95467 4.97832 5.02277 5.09897 5.14242 5.26849 5.32861 5.37414 5.62420 5.84873 6.03149 6.10743 6.29298 6.50422 6.61587 6.86237 6.94260 8.25853 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029286 B = 0.002392 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.873806 B =11703.133630 C =11951.512099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.245 4.245 11 C -0.067 4.067 12 C -0.233 4.233 13 C 0.136 3.864 14 O -0.349 6.349 15 C 0.473 3.527 16 O -0.515 6.515 17 C -0.571 4.571 18 H 0.191 0.809 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.549 4.549 22 S 2.384 3.616 23 O -0.970 6.970 24 O -0.952 6.952 25 C -0.077 4.077 26 C -0.192 4.192 27 H 0.291 0.709 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.109 0.891 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -12.978 17.350 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.265 4.265 11 C -0.085 4.085 12 C -0.234 4.234 13 C 0.063 3.937 14 O -0.265 6.265 15 C 0.315 3.685 16 O -0.404 6.404 17 C -0.677 4.677 18 H 0.209 0.791 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.684 4.684 22 S 2.568 3.432 23 O -0.967 6.967 24 O -0.949 6.949 25 C -0.096 4.096 26 C -0.212 4.212 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.127 0.873 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.780 -13.631 16.356 21.365 hybrid contribution 0.151 1.399 -0.315 1.441 sum -1.629 -12.232 16.041 20.239 Atomic orbital electron populations 1.69860 1.09120 1.30965 1.34299 1.26831 0.95514 1.04728 0.90983 0.85154 0.79224 0.75669 0.79467 1.18700 1.18853 1.18119 1.19931 0.98529 0.92403 1.41185 0.90214 1.18054 0.91569 0.93132 0.88615 1.21159 1.04640 0.92945 1.07734 1.20710 0.94119 0.97257 0.96390 1.18933 1.02877 0.92306 1.09311 1.21671 0.96175 0.93008 0.82803 1.86661 1.59822 1.38141 1.41913 1.22786 0.80577 0.79709 0.85434 1.90872 1.28556 1.60838 1.60135 1.30888 1.12975 1.26091 0.97755 0.79149 1.22534 1.00233 1.03813 0.88415 1.22067 1.07651 0.86752 0.98192 1.30350 1.14812 1.07187 1.16031 1.09475 0.74649 0.76658 0.82371 1.93574 1.47530 1.69676 1.85903 1.93634 1.48995 1.81165 1.71078 1.20768 0.98407 0.92264 0.98147 1.21268 1.00267 0.97011 1.02607 0.89785 0.87946 0.86693 0.91087 0.90868 0.89230 0.85923 0.85148 0.86677 0.81855 0.80922 0.87297 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.60 10.97 21.83 0.24 -41.36 16 2 C 0.04 1.75 5.14 85.26 0.44 2.18 16 3 Si 0.98 36.81 29.60 68.60 2.03 38.84 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.49 -25.98 9.05 23.46 0.21 -25.77 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 10 C -0.25 -12.03 9.80 22.73 0.22 -11.80 16 11 C -0.07 -2.96 9.67 22.22 0.21 -2.74 16 12 C -0.23 -10.13 5.54 -19.68 -0.11 -10.23 16 13 C 0.14 5.07 5.58 71.24 0.40 5.46 16 14 O -0.35 -12.12 10.20 -51.42 -0.52 -12.64 16 15 C 0.47 14.48 7.18 71.24 0.51 14.99 16 16 O -0.51 -18.99 14.38 29.13 0.42 -18.57 16 17 C -0.57 -10.74 3.70 30.68 0.11 -10.63 16 18 H 0.19 2.64 8.14 -2.38 -0.02 2.62 16 19 C -0.11 -1.18 5.91 31.72 0.19 -0.99 16 20 C -0.11 -0.32 6.40 31.28 0.20 -0.12 16 21 C -0.55 -2.92 7.26 72.38 0.53 -2.40 16 22 S 2.38 46.54 5.79 -56.49 -0.33 46.22 16 23 O -0.97 -25.15 18.15 -127.47 -2.31 -27.47 16 24 O -0.95 -28.44 15.89 -118.94 -1.89 -30.33 16 25 C -0.08 -3.57 9.67 22.22 0.21 -3.35 16 26 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 27 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 28 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 29 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 31 H 0.07 2.61 8.07 -2.38 -0.02 2.59 16 32 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.11 5.68 6.18 -2.91 -0.02 5.66 16 Total: -1.00 -78.25 345.08 1.91 -76.34 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.07 Total: 19.51 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 3.21 Total: -50.54 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.24 Total: -41.36 kcal Atomic # 8 Polarization: -84.70 SS G_CDS: -4.31 Total: -89.01 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 46.54 SS G_CDS: -0.33 Total: 46.22 kcal Total: -78.25 1.91 -76.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846943218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.510 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds