Wall clock time and date at job start Tue Mar 31 2020 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47249 * 270.00223 * 3 2 1 5 5 H 1.48503 * 109.46722 * 30.00215 * 3 2 1 6 6 H 1.48505 * 109.46972 * 150.00023 * 3 2 1 7 7 C 1.39951 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 197.85270 * 7 2 1 9 9 C 1.41389 * 120.00082 * 17.85988 * 7 2 1 10 10 C 1.40722 * 120.24542 * 24.38410 * 9 7 2 11 11 C 1.37617 * 119.74635 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.24805 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74929 * 180.02562 * 12 11 10 14 14 O 1.45202 * 109.46685 * 90.00947 * 13 12 11 15 15 C 1.34229 * 116.99889 * 180.02562 * 14 13 12 16 16 O 1.20819 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99828 * 179.97438 * 15 14 13 18 18 H 1.08997 * 110.28922 * 337.11440 * 17 15 14 19 19 C 1.54163 * 110.32144 * 214.99854 * 17 15 14 20 20 C 1.53876 * 108.70642 * 213.19230 * 19 17 15 21 21 C 1.55051 * 106.62266 * 47.18255 * 20 19 17 22 22 S 1.82918 * 110.31891 * 99.33709 * 17 15 14 23 23 O 1.42107 * 109.35271 * 7.62851 * 22 17 15 24 24 O 1.42097 * 109.35515 * 234.42518 * 22 17 15 25 25 C 1.38637 * 120.50029 * 0.28160 * 12 11 10 26 26 C 1.37616 * 120.24770 * 359.44777 * 25 12 11 27 27 H 0.97001 * 119.99935 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12915 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87715 * 179.97438 * 11 10 9 30 30 H 1.08994 * 109.47371 * 330.00456 * 13 12 11 31 31 H 1.09001 * 109.47088 * 209.99954 * 13 12 11 32 32 H 1.08995 * 109.64720 * 93.33835 * 19 17 15 33 33 H 1.09007 * 109.64325 * 333.04668 * 19 17 15 34 34 H 1.09001 * 110.02698 * 287.88549 * 20 19 17 35 35 H 1.08998 * 110.02670 * 166.46700 * 20 19 17 36 36 H 1.08997 * 110.79431 * 75.83441 * 21 20 19 37 37 H 1.09004 * 110.78639 * 199.29953 * 21 20 19 38 38 H 1.08006 * 119.87505 * 179.69956 * 25 12 11 39 39 H 1.08003 * 120.13056 * 180.27350 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3766 10 6 0.2209 -2.3616 -1.2123 11 6 -0.4092 -3.5309 -1.5724 12 6 0.0668 -4.7501 -1.1154 13 6 -0.6315 -6.0237 -1.5172 14 8 -0.0467 -6.5292 -2.7463 15 6 -0.5597 -7.6660 -3.2427 16 8 -1.4670 -8.2204 -2.6690 17 6 -0.0039 -8.2506 -4.5156 18 1 0.4891 -7.4763 -5.1034 19 6 -1.1287 -8.9114 -5.3371 20 6 -0.5474 -10.1255 -6.0827 21 6 0.2824 -10.9266 -5.0465 22 16 1.1659 -9.6043 -4.1351 23 8 1.1252 -9.8844 -2.7425 24 8 2.4098 -9.3445 -4.7709 25 6 1.1773 -4.8062 -0.2874 26 6 1.8265 -3.6501 0.0810 27 1 -0.4850 0.8401 0.0004 28 1 -0.1510 -1.4130 -1.5705 29 1 -1.2779 -3.4986 -2.2134 30 1 -1.6912 -5.8229 -1.6747 31 1 -0.5158 -6.7662 -0.7276 32 1 -1.5262 -8.1955 -6.0565 33 1 -1.9262 -9.2385 -4.6698 34 1 0.0950 -9.7908 -6.8972 35 1 -1.3545 -10.7449 -6.4737 36 1 -0.3707 -11.4873 -4.3779 37 1 0.9883 -11.5902 -5.5460 38 1 1.5367 -5.7612 0.0667 39 1 2.6941 -3.6963 0.7226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846943220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:40 Heat of formation + Delta-G solvation = -140.124926 kcal Electronic energy + Delta-G solvation = -24514.718223 eV Core-core repulsion = 20707.322720 eV Total energy + Delta-G solvation = -3807.395503 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43404 -37.81884 -37.39778 -36.89934 -36.32318 -35.85947 -33.89999 -31.31147 -30.54041 -29.38053 -27.38742 -26.18522 -23.91718 -22.30361 -21.20662 -21.07850 -20.08919 -19.13197 -18.01035 -17.48654 -17.39928 -17.02552 -16.33128 -15.88926 -15.59420 -15.33501 -14.65184 -14.42244 -14.41253 -13.91113 -13.75828 -13.27837 -12.79062 -12.72614 -12.63511 -12.44592 -12.40841 -12.34030 -12.24508 -12.04418 -11.57464 -11.47773 -11.29363 -11.18035 -11.11433 -10.77880 -10.67862 -10.63652 -10.41583 -10.24444 -9.71801 -9.47824 -9.24012 -7.58293 -7.47798 -6.89003 -4.48049 -0.48274 1.98122 2.23474 2.32543 2.81685 2.99770 3.02315 3.05295 3.16246 3.22622 3.70401 3.84609 3.86482 4.09088 4.18900 4.42078 4.48433 4.62354 4.86534 5.03089 5.08218 5.27951 5.37328 5.54498 5.58537 5.63416 5.65122 6.03386 6.24316 6.30489 6.65214 6.86439 6.96076 7.16669 7.24808 7.50355 7.70300 7.80191 7.94570 7.98983 8.17719 8.52254 8.76948 8.85105 10.04982 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.002520 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.430117 B =11108.198810 C =11326.138781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.171 4.171 11 C -0.074 4.074 12 C -0.240 4.240 13 C 0.134 3.866 14 O -0.343 6.343 15 C 0.484 3.516 16 O -0.494 6.494 17 C -0.573 4.573 18 H 0.172 0.828 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.585 4.585 22 S 2.403 3.597 23 O -0.916 6.916 24 O -0.918 6.918 25 C -0.062 4.062 26 C -0.230 4.230 27 H 0.283 0.717 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -15.922 -12.549 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.191 4.191 11 C -0.093 4.093 12 C -0.242 4.242 13 C 0.063 3.937 14 O -0.260 6.260 15 C 0.324 3.676 16 O -0.383 6.383 17 C -0.679 4.679 18 H 0.190 0.810 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.715 4.715 22 S 2.581 3.419 23 O -0.913 6.913 24 O -0.915 6.915 25 C -0.081 4.081 26 C -0.249 4.249 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.109 0.891 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.585 -15.850 -11.773 19.913 hybrid contribution -0.492 0.882 -0.382 1.080 sum -3.077 -14.968 -12.154 19.525 Atomic orbital electron populations 1.69825 1.07701 1.29561 1.33878 1.25988 0.94776 1.01595 0.92055 0.86254 0.80516 0.80209 0.79460 1.19124 1.20205 1.18465 1.19704 0.98310 0.91229 1.39095 0.90070 1.17705 0.90755 0.92102 0.87780 1.21295 0.99476 0.96723 1.01559 1.20530 0.98077 0.92530 0.98156 1.18643 1.03702 0.91331 1.10492 1.21886 0.96093 0.94238 0.81473 1.86695 1.59869 1.36756 1.42648 1.21699 0.81212 0.80466 0.84179 1.90643 1.27961 1.60452 1.59223 1.30405 1.16111 1.18393 1.02970 0.80989 1.22065 0.96426 0.96802 0.99419 1.22224 1.01076 0.95120 0.97215 1.30660 1.13461 1.15056 1.12351 1.09148 0.76813 0.79183 0.76724 1.93668 1.86670 1.82379 1.28583 1.93654 1.36653 1.83528 1.77696 1.20437 0.94150 0.96815 0.96654 1.20963 1.03836 0.92734 1.07374 0.90608 0.86211 0.89314 0.91585 0.91389 0.88109 0.87863 0.89029 0.87717 0.83823 0.83944 0.89053 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.15 29.60 -169.99 -5.03 13.12 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.45 -11.81 9.05 -37.74 -0.34 -12.15 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.12 3.14 5.58 -106.82 -0.60 2.55 16 10 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 11 C -0.07 -1.73 9.67 -39.66 -0.38 -2.11 16 12 C -0.24 -5.38 5.54 -104.33 -0.58 -5.96 16 13 C 0.13 2.61 5.58 36.01 0.20 2.81 16 14 O -0.34 -6.34 10.20 -39.26 -0.40 -6.74 16 15 C 0.48 7.55 6.43 36.00 0.23 7.79 16 16 O -0.49 -8.44 15.60 -18.74 -0.29 -8.73 16 17 C -0.57 -5.95 3.71 -27.28 -0.10 -6.05 16 18 H 0.17 1.45 8.14 -51.93 -0.42 1.02 16 19 C -0.11 -0.75 5.91 -25.67 -0.15 -0.90 16 20 C -0.12 -0.51 6.48 -25.19 -0.16 -0.67 16 21 C -0.58 -3.19 7.31 38.24 0.28 -2.91 16 22 S 2.40 25.49 5.95 -107.50 -0.64 24.85 16 23 O -0.92 -13.78 17.29 -57.71 -1.00 -14.78 16 24 O -0.92 -12.02 18.15 -57.71 -1.05 -13.07 16 25 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 26 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 28 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.80 6.96 -51.93 -0.36 0.44 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -33.63 346.08 -10.26 -43.89 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.88 Total: 3.79 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -2.79 Total: -28.42 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.61 Total: -19.13 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -2.74 Total: -43.32 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 25.49 SS G_CDS: -0.64 Total: 24.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.63 -10.26 -43.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846943220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.238 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds