Wall clock time and date at job start Tue Mar 31 2020 13:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47249 * 270.00223 * 3 2 1 5 5 H 1.48503 * 109.46722 * 30.00215 * 3 2 1 6 6 H 1.48505 * 109.46972 * 150.00023 * 3 2 1 7 7 C 1.39951 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 197.85270 * 7 2 1 9 9 C 1.41389 * 120.00082 * 17.85988 * 7 2 1 10 10 C 1.40722 * 120.24542 * 24.38410 * 9 7 2 11 11 C 1.37617 * 119.74635 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.24805 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74929 * 180.02562 * 12 11 10 14 14 O 1.45202 * 109.46685 * 90.00947 * 13 12 11 15 15 C 1.34229 * 116.99889 * 180.02562 * 14 13 12 16 16 O 1.20819 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99828 * 179.97438 * 15 14 13 18 18 H 1.08997 * 110.28922 * 337.11440 * 17 15 14 19 19 C 1.54163 * 110.32144 * 214.99854 * 17 15 14 20 20 C 1.53876 * 108.70642 * 213.19230 * 19 17 15 21 21 C 1.55051 * 106.62266 * 47.18255 * 20 19 17 22 22 S 1.82918 * 110.31891 * 99.33709 * 17 15 14 23 23 O 1.42107 * 109.35271 * 7.62851 * 22 17 15 24 24 O 1.42097 * 109.35515 * 234.42518 * 22 17 15 25 25 C 1.38637 * 120.50029 * 0.28160 * 12 11 10 26 26 C 1.37616 * 120.24770 * 359.44777 * 25 12 11 27 27 H 0.97001 * 119.99935 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12915 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87715 * 179.97438 * 11 10 9 30 30 H 1.08994 * 109.47371 * 330.00456 * 13 12 11 31 31 H 1.09001 * 109.47088 * 209.99954 * 13 12 11 32 32 H 1.08995 * 109.64720 * 93.33835 * 19 17 15 33 33 H 1.09007 * 109.64325 * 333.04668 * 19 17 15 34 34 H 1.09001 * 110.02698 * 287.88549 * 20 19 17 35 35 H 1.08998 * 110.02670 * 166.46700 * 20 19 17 36 36 H 1.08997 * 110.79431 * 75.83441 * 21 20 19 37 37 H 1.09004 * 110.78639 * 199.29953 * 21 20 19 38 38 H 1.08006 * 119.87505 * 179.69956 * 25 12 11 39 39 H 1.08003 * 120.13056 * 180.27350 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3766 10 6 0.2209 -2.3616 -1.2123 11 6 -0.4092 -3.5309 -1.5724 12 6 0.0668 -4.7501 -1.1154 13 6 -0.6315 -6.0237 -1.5172 14 8 -0.0467 -6.5292 -2.7463 15 6 -0.5597 -7.6660 -3.2427 16 8 -1.4670 -8.2204 -2.6690 17 6 -0.0039 -8.2506 -4.5156 18 1 0.4891 -7.4763 -5.1034 19 6 -1.1287 -8.9114 -5.3371 20 6 -0.5474 -10.1255 -6.0827 21 6 0.2824 -10.9266 -5.0465 22 16 1.1659 -9.6043 -4.1351 23 8 1.1252 -9.8844 -2.7425 24 8 2.4098 -9.3445 -4.7709 25 6 1.1773 -4.8062 -0.2874 26 6 1.8265 -3.6501 0.0810 27 1 -0.4850 0.8401 0.0004 28 1 -0.1510 -1.4130 -1.5705 29 1 -1.2779 -3.4986 -2.2134 30 1 -1.6912 -5.8229 -1.6747 31 1 -0.5158 -6.7662 -0.7276 32 1 -1.5262 -8.1955 -6.0565 33 1 -1.9262 -9.2385 -4.6698 34 1 0.0950 -9.7908 -6.8972 35 1 -1.3545 -10.7449 -6.4737 36 1 -0.3707 -11.4873 -4.3779 37 1 0.9883 -11.5902 -5.5460 38 1 1.5367 -5.7612 0.0667 39 1 2.6941 -3.6963 0.7226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846943220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:39 Heat of formation + Delta-G solvation = -162.090046 kcal Electronic energy + Delta-G solvation = -24515.670702 eV Core-core repulsion = 20707.322720 eV Total energy + Delta-G solvation = -3808.347982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72789 -39.58027 -38.30873 -38.01055 -37.29217 -36.77574 -35.73452 -32.77841 -31.64189 -31.26500 -29.02238 -26.99180 -25.56587 -23.15126 -22.99280 -22.10784 -21.87903 -20.03713 -19.30854 -19.12711 -18.44033 -18.03545 -17.38550 -17.20977 -17.01335 -16.48703 -16.00208 -15.68187 -15.50911 -15.15428 -15.03044 -14.54587 -14.18011 -14.06945 -13.90291 -13.58658 -13.40618 -13.33726 -13.30978 -13.22608 -13.06129 -12.89742 -12.82065 -12.45929 -12.24825 -12.02785 -11.87708 -11.78866 -11.68793 -11.51293 -11.36218 -11.31748 -11.07159 -9.48837 -9.39339 -8.72369 -6.43207 -1.25160 0.64088 0.94239 1.06525 1.36090 1.39353 1.41435 1.51504 1.66802 2.18068 2.48480 2.63830 2.93182 3.17781 3.43216 3.62554 3.72422 3.76818 3.99714 4.01704 4.04898 4.15224 4.42557 4.43121 4.49503 4.55656 4.66247 4.95857 4.96106 5.02569 5.08662 5.13992 5.25430 5.31870 5.36035 5.60766 5.83300 6.01606 6.08944 6.27689 6.47368 6.59994 6.84746 6.92662 8.24703 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.002520 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.430117 B =11108.198810 C =11326.138781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.089 3.911 10 C -0.193 4.193 11 C -0.077 4.077 12 C -0.237 4.237 13 C 0.138 3.862 14 O -0.361 6.361 15 C 0.477 3.523 16 O -0.512 6.512 17 C -0.569 4.569 18 H 0.188 0.812 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.542 4.542 22 S 2.377 3.623 23 O -0.976 6.976 24 O -0.955 6.955 25 C -0.069 4.069 26 C -0.246 4.246 27 H 0.292 0.708 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.112 0.888 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 -17.482 -15.029 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.212 4.212 11 C -0.095 4.095 12 C -0.238 4.238 13 C 0.066 3.934 14 O -0.278 6.278 15 C 0.319 3.681 16 O -0.401 6.401 17 C -0.675 4.675 18 H 0.206 0.794 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.677 4.677 22 S 2.562 3.438 23 O -0.973 6.973 24 O -0.952 6.952 25 C -0.087 4.087 26 C -0.265 4.265 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.193 0.807 38 H 0.130 0.870 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.430 -17.404 -14.230 22.741 hybrid contribution -0.340 1.148 0.298 1.234 sum -3.770 -16.256 -13.932 21.739 Atomic orbital electron populations 1.69862 1.09102 1.31008 1.34122 1.26846 0.95545 1.04735 0.90961 0.85134 0.79043 0.75483 0.79658 1.18521 1.19008 1.18172 1.19940 0.98561 0.92399 1.41071 0.90239 1.18060 0.91597 0.93089 0.88616 1.21287 1.00266 0.97065 1.02595 1.20776 0.98486 0.92181 0.98066 1.18963 1.03020 0.92470 1.09351 1.21689 0.96297 0.93002 0.82409 1.86641 1.60441 1.38576 1.42104 1.22582 0.80865 0.79296 0.85403 1.90624 1.28861 1.60525 1.60133 1.30525 1.17461 1.18763 1.00756 0.79423 1.22257 0.94890 0.98246 0.99344 1.22423 1.02199 0.93908 0.96706 1.30491 1.13263 1.12251 1.11697 1.09719 0.77185 0.80686 0.76201 1.93590 1.87606 1.83361 1.32740 1.93601 1.39348 1.84601 1.77616 1.20729 0.94215 0.97239 0.96506 1.21154 1.04510 0.92942 1.07921 0.89728 0.87443 0.87107 0.90330 0.91081 0.85981 0.88725 0.86797 0.84245 0.82143 0.80680 0.86959 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.01 10.95 21.83 0.24 -41.77 16 2 C 0.04 1.77 5.14 85.26 0.44 2.20 16 3 Si 0.99 37.51 29.60 68.60 2.03 39.54 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.49 -26.47 9.05 23.46 0.21 -26.26 16 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 9 C 0.09 4.88 5.58 -21.29 -0.12 4.76 16 10 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 11 C -0.08 -3.63 9.67 22.22 0.21 -3.41 16 12 C -0.24 -10.70 5.54 -19.67 -0.11 -10.81 16 13 C 0.14 5.34 5.58 71.24 0.40 5.73 16 14 O -0.36 -13.31 10.20 -51.41 -0.52 -13.84 16 15 C 0.48 14.64 6.43 71.24 0.46 15.10 16 16 O -0.51 -17.25 15.60 21.99 0.34 -16.91 16 17 C -0.57 -10.95 3.71 30.24 0.11 -10.84 16 18 H 0.19 2.89 8.14 -2.39 -0.02 2.87 16 19 C -0.11 -1.11 5.91 31.28 0.18 -0.92 16 20 C -0.11 -0.36 6.48 31.59 0.20 -0.15 16 21 C -0.54 -3.54 7.31 72.68 0.53 -3.01 16 22 S 2.38 48.33 5.95 -56.49 -0.34 47.99 16 23 O -0.98 -30.15 17.29 -127.49 -2.20 -32.35 16 24 O -0.95 -24.75 18.15 -127.49 -2.31 -27.07 16 25 C -0.07 -3.20 9.67 22.22 0.21 -2.99 16 26 C -0.25 -12.49 9.80 22.73 0.22 -12.27 16 27 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 28 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 29 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 31 H 0.07 2.67 8.07 -2.39 -0.02 2.66 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.18 6.96 -2.38 -0.02 1.17 16 34 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.18 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -77.85 346.08 1.46 -76.39 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.07 Total: 20.91 kcal Atomic # 6 Polarization: -56.06 SS G_CDS: 3.16 Total: -52.90 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.24 Total: -41.77 kcal Atomic # 8 Polarization: -85.47 SS G_CDS: -4.70 Total: -90.16 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: 48.33 SS G_CDS: -0.34 Total: 47.99 kcal Total: -77.85 1.46 -76.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846943220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.701 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds