Wall clock time and date at job start Tue Mar 31 2020 14:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46912 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47433 * 299.99781 * 3 2 1 6 6 H 1.48506 * 109.47329 * 59.99883 * 3 2 1 7 7 C 1.37873 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00249 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99832 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50045 * 59.92863 * 9 7 2 11 11 C 1.53038 * 109.49756 * 179.97438 * 9 7 2 12 12 C 1.53041 * 109.53567 * 181.31306 * 11 9 7 13 13 C 1.53190 * 109.31680 * 298.63445 * 12 11 9 14 14 N 1.46926 * 108.77071 * 54.63654 * 13 12 11 15 15 C 1.34777 * 120.63212 * 126.37124 * 14 13 12 16 16 S 1.71193 * 120.00348 * 175.03190 * 15 14 13 17 17 N 1.34781 * 119.99604 * 354.75254 * 15 14 13 18 18 C 1.39943 * 120.00112 * 79.52721 * 17 15 14 19 19 C 1.38868 * 120.05379 * 4.78485 * 18 17 15 20 20 C 1.38121 * 119.93503 * 179.76152 * 19 18 17 21 21 C 1.38379 * 120.06014 * 0.48996 * 20 19 18 22 22 Cl 1.73590 * 119.94229 * 179.74338 * 21 20 19 23 23 C 1.38385 * 120.11412 * 359.75970 * 21 20 19 24 24 C 1.38105 * 120.06244 * 0.02562 * 23 21 20 25 25 C 1.46930 * 118.74052 * 306.64248 * 14 13 12 26 26 H 0.96998 * 120.00544 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.45959 * 61.29672 * 11 9 7 28 28 H 1.09001 * 109.46331 * 301.33651 * 11 9 7 29 29 H 1.09004 * 109.49531 * 178.68227 * 12 11 9 30 30 H 1.09001 * 109.49856 * 58.59258 * 12 11 9 31 31 H 1.08993 * 109.58805 * 294.85385 * 13 12 11 32 32 H 1.08997 * 109.70569 * 174.48762 * 13 12 11 33 33 H 0.97004 * 119.99874 * 259.52899 * 17 15 14 34 34 H 1.07995 * 120.03468 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.96253 * 180.22801 * 20 19 18 36 36 H 1.08001 * 119.96994 * 179.97438 * 23 21 20 37 37 H 1.07996 * 120.03404 * 179.97438 * 24 23 21 38 38 H 1.09006 * 109.58636 * 173.14532 * 25 14 13 39 39 H 1.08994 * 109.58383 * 293.56945 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6236 -2.5571 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 -0.0325 13 6 0.6058 -5.1003 1.2197 14 7 -0.2527 -3.9110 1.3042 15 6 -1.5892 -4.0360 1.4258 16 16 -2.5621 -2.6455 1.6507 17 7 -2.1602 -5.2554 1.3648 18 6 -2.1401 -6.0943 2.4847 19 6 -1.6213 -5.6353 3.6883 20 6 -1.6072 -6.4637 4.7934 21 6 -2.1003 -7.7533 4.6993 22 17 -2.0750 -8.7940 6.0884 23 6 -2.6131 -8.2147 3.4997 24 6 -2.6336 -7.3891 2.3928 25 6 0.3727 -2.5826 1.2475 26 1 -0.4851 0.8400 -0.0004 27 1 2.8563 -3.6183 0.9020 28 1 2.8874 -3.5918 -0.8773 29 1 2.1898 -5.8163 -0.0561 30 1 0.8509 -5.0231 -0.9212 31 1 1.2396 -5.1569 2.1047 32 1 -0.0140 -5.9946 1.1563 33 1 -2.5850 -5.5515 0.5445 34 1 -1.2323 -4.6305 3.7611 35 1 -1.2072 -6.1060 5.7306 36 1 -2.9969 -9.2218 3.4288 37 1 -3.0335 -7.7499 1.4567 38 1 -0.4010 -1.8162 1.1998 39 1 0.9870 -2.4299 2.1348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849271276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:49 Heat of formation + Delta-G solvation = 44.538582 kcal Electronic energy + Delta-G solvation = -22865.332000 eV Core-core repulsion = 19538.946023 eV Total energy + Delta-G solvation = -3326.385977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47665 -38.85097 -36.92490 -35.94802 -33.51119 -32.58516 -31.28324 -30.15869 -29.51368 -25.82039 -25.31986 -23.26503 -22.86444 -22.35319 -20.93014 -19.30971 -18.16733 -17.65891 -17.09420 -16.57178 -16.28029 -15.03451 -14.75487 -14.60765 -14.30202 -14.02191 -13.88495 -13.73920 -13.63205 -12.96474 -12.86293 -12.42588 -12.39522 -12.14765 -11.71332 -11.26853 -11.12684 -11.06545 -10.95332 -10.88394 -10.64318 -10.55276 -10.36218 -10.01120 -9.69835 -9.37943 -9.28852 -9.17348 -8.51742 -7.91090 -7.29217 -6.73487 -6.09160 -4.20919 1.00347 1.08262 1.18435 2.03832 2.34197 3.22723 3.26610 3.34381 3.36064 3.36665 3.64911 4.34974 4.53663 4.65449 4.92286 5.03033 5.06749 5.10099 5.19856 5.25826 5.32762 5.60191 5.68863 5.77659 5.83388 5.94376 5.99181 6.08902 6.15429 6.31325 6.38318 6.51687 6.65239 6.67447 6.89701 6.99215 7.20803 7.33619 7.57143 7.68406 7.91764 8.20544 8.81643 9.45951 10.94585 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.003239 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.106807 B = 8642.434570 C = 8940.199306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.047 3.953 10 H 0.031 0.969 11 C -0.117 4.117 12 C -0.130 4.130 13 C 0.083 3.917 14 N -0.501 5.501 15 C 0.541 3.459 16 S -0.574 6.574 17 N -0.694 5.694 18 C 0.212 3.788 19 C -0.163 4.163 20 C -0.062 4.062 21 C -0.081 4.081 22 Cl -0.080 7.080 23 C -0.067 4.067 24 C -0.165 4.165 25 C 0.076 3.924 26 H 0.267 0.733 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.422 0.578 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -18.152 5.521 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.049 0.951 11 C -0.154 4.154 12 C -0.169 4.169 13 C -0.043 4.043 14 N -0.199 5.199 15 C 0.190 3.810 16 S -0.439 6.439 17 N -0.329 5.329 18 C 0.109 3.891 19 C -0.185 4.185 20 C -0.081 4.081 21 C -0.109 4.109 22 Cl -0.052 7.052 23 C -0.086 4.086 24 C -0.188 4.188 25 C -0.044 4.044 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.183 0.817 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.146 -17.030 5.776 18.110 hybrid contribution 0.798 -0.098 -0.340 0.873 sum -1.348 -17.128 5.436 18.021 Atomic orbital electron populations 1.69853 1.05465 1.27273 1.47446 1.25075 0.94974 0.99355 0.94501 0.86527 0.79962 0.83692 0.77810 1.19838 1.20916 1.20790 1.20965 0.92929 0.89526 1.53323 0.92064 1.18893 0.92270 0.92978 0.93116 0.95058 1.21730 0.98804 0.93573 1.01315 1.21943 0.98588 0.99942 0.96424 1.22168 0.93973 0.87954 1.00217 1.49352 1.04389 1.11602 1.54597 1.22339 0.85641 0.89650 0.83358 1.93319 1.59976 1.28250 1.62381 1.41923 1.61675 1.14632 1.14668 1.17867 0.94876 0.89482 0.86836 1.20775 1.05425 1.00955 0.91382 1.20799 0.97189 0.91371 0.98758 1.20678 1.08176 0.92821 0.89219 1.98350 1.97589 1.66917 1.42304 1.20750 0.97520 0.99894 0.90477 1.20535 1.06522 0.92002 0.99751 1.23507 1.00778 0.79910 1.00167 0.92236 0.92791 0.92244 0.91321 0.91844 0.90189 0.90153 0.73645 0.85046 0.84758 0.84761 0.84784 0.81703 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.78 11.39 55.43 0.63 -23.15 16 2 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -13.36 8.56 -34.44 -0.29 -13.65 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.05 2.24 -91.87 -0.21 0.85 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.12 -2.06 5.11 -26.69 -0.14 -2.20 16 12 C -0.13 -1.83 6.08 -26.61 -0.16 -1.99 16 13 C 0.08 1.14 6.09 -3.71 -0.02 1.12 16 14 N -0.50 -8.75 2.98 -175.06 -0.52 -9.27 16 15 C 0.54 9.52 5.40 -86.91 -0.47 9.06 16 16 S -0.57 -12.96 28.68 -107.50 -3.08 -16.04 16 17 N -0.69 -9.30 4.28 -11.39 -0.05 -9.35 16 18 C 0.21 2.56 5.36 -83.69 -0.45 2.11 16 19 C -0.16 -2.11 9.15 -39.39 -0.36 -2.47 16 20 C -0.06 -0.70 9.82 -39.57 -0.39 -1.09 16 21 C -0.08 -0.84 6.32 -39.48 -0.25 -1.09 16 22 Cl -0.08 -0.79 28.95 -51.86 -1.50 -2.29 16 23 C -0.07 -0.62 9.82 -39.58 -0.39 -1.01 16 24 C -0.17 -1.58 9.90 -39.40 -0.39 -1.97 16 25 C 0.08 1.66 5.25 -3.93 -0.02 1.64 16 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.95 6.06 -51.93 -0.31 0.64 16 33 H 0.42 4.76 8.83 -40.82 -0.36 4.40 16 34 H 0.13 1.98 7.02 -52.49 -0.37 1.61 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.17 4.17 4.11 -50.55 -0.21 3.96 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -29.03 344.77 -13.00 -42.03 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.02 Total: 6.57 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.63 Total: -9.08 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.06 Total: -41.76 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -12.96 SS G_CDS: -3.08 Total: -16.04 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.03 -13.00 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849271276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.573 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds