Wall clock time and date at job start Tue Mar 31 2020 14:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46912 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47433 * 299.99781 * 3 2 1 6 6 H 1.48506 * 109.47329 * 59.99883 * 3 2 1 7 7 C 1.37873 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00249 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99832 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50045 * 59.92863 * 9 7 2 11 11 C 1.53038 * 109.49756 * 179.97438 * 9 7 2 12 12 C 1.53041 * 109.53567 * 181.31306 * 11 9 7 13 13 C 1.53190 * 109.31680 * 298.63445 * 12 11 9 14 14 N 1.46926 * 108.77071 * 54.63654 * 13 12 11 15 15 C 1.34777 * 120.63212 * 126.37124 * 14 13 12 16 16 S 1.71193 * 120.00348 * 175.03190 * 15 14 13 17 17 N 1.34781 * 119.99604 * 354.75254 * 15 14 13 18 18 C 1.39943 * 120.00112 * 79.52721 * 17 15 14 19 19 C 1.38868 * 120.05379 * 4.78485 * 18 17 15 20 20 C 1.38121 * 119.93503 * 179.76152 * 19 18 17 21 21 C 1.38379 * 120.06014 * 0.48996 * 20 19 18 22 22 Cl 1.73590 * 119.94229 * 179.74338 * 21 20 19 23 23 C 1.38385 * 120.11412 * 359.75970 * 21 20 19 24 24 C 1.38105 * 120.06244 * 0.02562 * 23 21 20 25 25 C 1.46930 * 118.74052 * 306.64248 * 14 13 12 26 26 H 0.96998 * 120.00544 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.45959 * 61.29672 * 11 9 7 28 28 H 1.09001 * 109.46331 * 301.33651 * 11 9 7 29 29 H 1.09004 * 109.49531 * 178.68227 * 12 11 9 30 30 H 1.09001 * 109.49856 * 58.59258 * 12 11 9 31 31 H 1.08993 * 109.58805 * 294.85385 * 13 12 11 32 32 H 1.08997 * 109.70569 * 174.48762 * 13 12 11 33 33 H 0.97004 * 119.99874 * 259.52899 * 17 15 14 34 34 H 1.07995 * 120.03468 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.96253 * 180.22801 * 20 19 18 36 36 H 1.08001 * 119.96994 * 179.97438 * 23 21 20 37 37 H 1.07996 * 120.03404 * 179.97438 * 24 23 21 38 38 H 1.09006 * 109.58636 * 173.14532 * 25 14 13 39 39 H 1.08994 * 109.58383 * 293.56945 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6236 -2.5571 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 -0.0325 13 6 0.6058 -5.1003 1.2197 14 7 -0.2527 -3.9110 1.3042 15 6 -1.5892 -4.0360 1.4258 16 16 -2.5621 -2.6455 1.6507 17 7 -2.1602 -5.2554 1.3648 18 6 -2.1401 -6.0943 2.4847 19 6 -1.6213 -5.6353 3.6883 20 6 -1.6072 -6.4637 4.7934 21 6 -2.1003 -7.7533 4.6993 22 17 -2.0750 -8.7940 6.0884 23 6 -2.6131 -8.2147 3.4997 24 6 -2.6336 -7.3891 2.3928 25 6 0.3727 -2.5826 1.2475 26 1 -0.4851 0.8400 -0.0004 27 1 2.8563 -3.6183 0.9020 28 1 2.8874 -3.5918 -0.8773 29 1 2.1898 -5.8163 -0.0561 30 1 0.8509 -5.0231 -0.9212 31 1 1.2396 -5.1569 2.1047 32 1 -0.0140 -5.9946 1.1563 33 1 -2.5850 -5.5515 0.5445 34 1 -1.2323 -4.6305 3.7611 35 1 -1.2072 -6.1060 5.7306 36 1 -2.9969 -9.2218 3.4288 37 1 -3.0335 -7.7499 1.4567 38 1 -0.4010 -1.8162 1.1998 39 1 0.9870 -2.4299 2.1348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849271276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:48 Heat of formation + Delta-G solvation = 30.125561 kcal Electronic energy + Delta-G solvation = -22865.956995 eV Core-core repulsion = 19538.946023 eV Total energy + Delta-G solvation = -3327.010972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66571 -40.04345 -37.97559 -36.99063 -35.19157 -34.04879 -32.13792 -31.82534 -30.52864 -27.24720 -27.08866 -24.35449 -24.08307 -23.58907 -22.24905 -20.77830 -19.20465 -18.95803 -18.58606 -18.12735 -17.48847 -16.56091 -16.06870 -15.72705 -15.62157 -15.31684 -15.14373 -14.73133 -14.62135 -14.53707 -14.41318 -13.73703 -13.42422 -13.26693 -12.94806 -12.84077 -12.55081 -12.49506 -12.38149 -12.21263 -12.13347 -11.96372 -11.75588 -11.40203 -11.11567 -11.03734 -10.98137 -10.51939 -10.11755 -8.99733 -8.95311 -8.45443 -8.08912 -6.27290 -0.35159 0.17631 0.25108 0.84076 1.24048 1.41046 1.44703 1.54341 1.82020 2.19919 2.42952 2.64844 3.18670 3.68519 3.76243 3.83294 3.88159 4.07408 4.19972 4.27007 4.35371 4.40079 4.53550 4.58319 4.61490 4.84889 4.92834 4.94112 5.03738 5.09461 5.12376 5.21185 5.25936 5.34206 5.43641 5.57291 5.70880 5.80893 5.95866 6.10461 6.22733 6.28969 6.82804 7.43169 8.91844 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.003239 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.106807 B = 8642.434570 C = 8940.199306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.047 3.953 10 H -0.006 1.006 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.079 3.921 14 N -0.491 5.491 15 C 0.589 3.411 16 S -0.702 6.702 17 N -0.682 5.682 18 C 0.194 3.806 19 C -0.178 4.178 20 C -0.068 4.068 21 C -0.080 4.080 22 Cl -0.072 7.072 23 C -0.061 4.061 24 C -0.145 4.145 25 C 0.084 3.916 26 H 0.261 0.739 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.436 0.564 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.133 0.867 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -22.160 5.597 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.028 3.972 10 H 0.012 0.988 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.045 4.045 14 N -0.185 5.185 15 C 0.233 3.767 16 S -0.569 6.569 17 N -0.321 5.321 18 C 0.093 3.907 19 C -0.201 4.201 20 C -0.087 4.087 21 C -0.108 4.108 22 Cl -0.044 7.044 23 C -0.080 4.080 24 C -0.167 4.167 25 C -0.038 4.038 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.280 0.720 34 H 0.120 0.880 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.151 0.849 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.888 -21.105 5.855 21.920 hybrid contribution 0.495 0.942 -0.283 1.101 sum -0.393 -20.163 5.572 20.922 Atomic orbital electron populations 1.70036 1.06830 1.27316 1.48924 1.25806 0.95551 1.02500 0.94538 0.85621 0.79338 0.80104 0.77295 1.18598 1.21082 1.21166 1.21372 0.93235 0.90921 1.52267 0.91860 1.18788 0.92697 0.94232 0.91521 0.98765 1.21621 0.97949 0.93650 1.01745 1.21904 0.98884 0.99043 0.96063 1.22566 0.94050 0.86851 1.01078 1.49323 1.04793 1.11877 1.52553 1.21590 0.85052 0.89521 0.80585 1.93602 1.61900 1.33233 1.68149 1.41683 1.61766 1.12804 1.15838 1.17998 0.96543 0.90358 0.85763 1.20630 1.06727 1.00018 0.92692 1.20844 0.97537 0.91793 0.98520 1.20843 1.07430 0.92490 0.90040 1.98361 1.97507 1.66432 1.42053 1.21116 0.96277 1.01060 0.89525 1.20847 1.04389 0.90298 1.01178 1.22988 0.99792 0.81329 0.99646 0.93017 0.92087 0.92090 0.86920 0.92211 0.88450 0.87154 0.71976 0.88031 0.84216 0.81799 0.81522 0.84926 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.75 11.39 21.45 0.24 -51.51 16 2 C 0.02 0.96 5.30 84.65 0.45 1.41 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.90 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.54 -27.74 8.56 25.60 0.22 -27.52 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.05 2.15 2.24 -11.61 -0.03 2.12 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C -0.11 -3.77 5.11 30.62 0.16 -3.61 16 12 C -0.12 -2.96 6.08 30.67 0.19 -2.77 16 13 C 0.08 1.92 6.09 86.36 0.53 2.44 16 14 N -0.49 -17.03 2.98 -707.76 -2.11 -19.14 16 15 C 0.59 21.01 5.40 179.05 0.97 21.98 16 16 S -0.70 -33.95 28.68 -56.49 -1.62 -35.57 16 17 N -0.68 -17.26 4.28 -189.96 -0.81 -18.08 16 18 C 0.19 4.21 5.36 38.15 0.20 4.42 16 19 C -0.18 -4.42 9.15 22.39 0.20 -4.22 16 20 C -0.07 -1.41 9.82 22.28 0.22 -1.19 16 21 C -0.08 -1.42 6.32 22.34 0.14 -1.28 16 22 Cl -0.07 -1.21 28.95 -2.72 -0.08 -1.29 16 23 C -0.06 -0.85 9.82 22.27 0.22 -0.64 16 24 C -0.14 -2.14 9.90 22.39 0.22 -1.91 16 25 C 0.08 3.79 5.25 86.22 0.45 4.24 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.11 2.13 6.06 -2.39 -0.01 2.11 16 33 H 0.44 8.85 8.83 -92.71 -0.82 8.03 16 34 H 0.10 3.15 7.02 -2.91 -0.02 3.13 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.13 7.11 4.11 -3.26 -0.01 7.10 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -69.39 344.77 2.04 -67.35 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.25 Total: 19.86 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.14 Total: -6.54 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.68 Total: -88.72 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -33.95 SS G_CDS: -1.62 Total: -35.57 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -69.39 2.04 -67.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849271276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.472 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds