Wall clock time and date at job start Tue Mar 31 2020 14:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00254 * 2 1 4 4 H 1.48503 * 109.47084 * 270.00254 * 3 2 1 5 5 H 1.48506 * 109.47199 * 30.00137 * 3 2 1 6 6 H 1.48496 * 109.47360 * 150.00120 * 3 2 1 7 7 C 1.37878 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00251 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50288 * 300.06260 * 9 7 2 11 11 C 1.53046 * 109.50047 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53900 * 178.64980 * 11 9 7 13 13 C 1.53192 * 109.31272 * 61.37071 * 12 11 9 14 14 N 1.46925 * 108.77193 * 305.36110 * 13 12 11 15 15 C 1.34779 * 120.63090 * 233.58551 * 14 13 12 16 16 S 1.71206 * 119.99944 * 186.43063 * 15 14 13 17 17 N 1.34771 * 120.00144 * 6.43230 * 15 14 13 18 18 C 1.39946 * 120.00516 * 184.50428 * 17 15 14 19 19 C 1.38873 * 120.05605 * 315.64782 * 18 17 15 20 20 C 1.38110 * 119.94061 * 180.29625 * 19 18 17 21 21 C 1.38376 * 120.05874 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 119.94349 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.11607 * 0.02562 * 21 20 19 24 24 C 1.38100 * 120.05938 * 0.02562 * 23 21 20 25 25 C 1.46933 * 118.74054 * 53.86449 * 14 13 12 26 26 H 0.97002 * 119.99702 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.45798 * 58.62923 * 11 9 7 28 28 H 1.08997 * 109.45921 * 298.67283 * 11 9 7 29 29 H 1.08998 * 109.50005 * 301.41055 * 12 11 9 30 30 H 1.09008 * 109.49456 * 181.31841 * 12 11 9 31 31 H 1.08996 * 109.58625 * 185.57472 * 13 12 11 32 32 H 1.08997 * 109.70658 * 65.21771 * 13 12 11 33 33 H 0.97000 * 119.99907 * 4.50611 * 17 15 14 34 34 H 1.08006 * 120.02880 * 0.27229 * 19 18 17 35 35 H 1.07997 * 119.96885 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.96944 * 179.97438 * 23 21 20 37 37 H 1.07999 * 120.03013 * 179.97438 * 24 23 21 38 38 H 1.08991 * 109.58469 * 65.92549 * 25 14 13 39 39 H 1.08998 * 109.58522 * 186.35611 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6236 -2.5571 0.8889 11 6 2.2449 -3.6629 -0.0018 12 6 1.4809 -4.9885 0.0322 13 6 0.6042 -5.1002 -1.2191 14 7 -0.2545 -3.9109 -1.3025 15 6 -1.5910 -4.0360 -1.4235 16 16 -2.5603 -2.6491 -1.6846 17 7 -2.1644 -5.2527 -1.3389 18 6 -3.5392 -5.3952 -1.5580 19 6 -4.4312 -4.4960 -0.9884 20 6 -5.7879 -4.6425 -1.2012 21 6 -6.2587 -5.6837 -1.9816 22 17 -7.9647 -5.8654 -2.2465 23 6 -5.3719 -6.5811 -2.5504 24 6 -4.0144 -6.4399 -2.3399 25 6 0.3721 -2.5826 -1.2578 26 1 -0.4850 0.8401 0.0004 27 1 2.8882 -3.5920 0.8752 28 1 2.8550 -3.6184 -0.9040 29 1 0.8518 -5.0232 0.9216 30 1 2.1897 -5.8164 0.0549 31 1 -0.0156 -5.9944 -1.1524 32 1 1.2351 -5.1583 -2.1060 33 1 -1.6241 -6.0297 -1.1260 34 1 -4.0643 -3.6831 -0.3792 35 1 -6.4820 -3.9437 -0.7581 36 1 -5.7419 -7.3932 -3.1587 37 1 -3.3228 -7.1407 -2.7836 38 1 0.9863 -2.4383 -2.1466 39 1 -0.4008 -1.8152 -1.2166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849271277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:51 Heat of formation + Delta-G solvation = 29.270126 kcal Electronic energy + Delta-G solvation = -22577.737921 eV Core-core repulsion = 19250.689854 eV Total energy + Delta-G solvation = -3327.048067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47065 -40.15440 -38.01106 -37.03581 -35.18970 -34.02358 -32.09675 -31.80697 -30.34181 -27.32443 -26.98420 -24.47890 -23.88289 -23.49620 -22.37369 -20.89022 -19.54940 -19.04397 -18.26344 -17.66350 -17.00683 -16.55227 -16.42508 -15.70886 -15.67869 -15.20729 -15.15843 -14.66924 -14.52590 -14.46156 -14.37568 -13.69021 -13.64976 -13.22084 -12.91342 -12.78118 -12.54923 -12.43690 -12.35702 -12.27763 -12.05516 -11.94128 -11.79926 -11.64976 -11.05121 -10.95823 -10.56931 -10.33602 -10.05976 -9.22712 -8.79807 -8.11380 -8.03107 -6.23714 -0.16442 0.39603 0.57160 0.91891 1.18064 1.42100 1.44307 1.53362 1.58705 2.23305 2.44707 2.67069 3.21427 3.71991 3.84456 3.93070 3.97582 4.11325 4.26802 4.34743 4.43494 4.51188 4.56259 4.65639 4.67942 4.85551 4.99047 5.06388 5.09595 5.17634 5.20738 5.26443 5.34837 5.35825 5.53818 5.65366 5.69251 5.86442 5.92677 6.10524 6.33195 6.38248 6.86460 7.46124 8.94914 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.003238 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.638359 B = 8643.953014 C = 9812.466390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.045 3.955 10 H -0.010 1.010 11 C -0.111 4.111 12 C -0.124 4.124 13 C 0.085 3.915 14 N -0.543 5.543 15 C 0.569 3.431 16 S -0.720 6.720 17 N -0.621 5.621 18 C 0.120 3.880 19 C -0.075 4.075 20 C -0.116 4.116 21 C -0.037 4.037 22 Cl -0.070 7.070 23 C -0.105 4.105 24 C -0.101 4.101 25 C 0.103 3.897 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.423 0.577 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.048 0.952 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -20.596 -3.874 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.025 3.975 10 H 0.008 0.992 11 C -0.149 4.149 12 C -0.162 4.162 13 C -0.038 4.038 14 N -0.246 5.246 15 C 0.208 3.792 16 S -0.586 6.586 17 N -0.253 5.253 18 C 0.027 3.973 19 C -0.099 4.099 20 C -0.137 4.137 21 C -0.064 4.064 22 Cl -0.041 7.041 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.019 4.019 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.267 0.733 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.066 0.934 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.084 -19.563 -4.064 20.886 hybrid contribution 0.828 0.810 0.387 1.221 sum -5.256 -18.752 -3.677 19.819 Atomic orbital electron populations 1.70060 1.06821 1.27193 1.48994 1.25807 0.95549 1.02448 0.94656 0.85690 0.78801 0.79862 0.78107 1.20325 1.21607 1.18924 1.21371 0.93148 0.91190 1.52264 0.92073 1.18948 0.92775 0.93984 0.91745 0.99183 1.21590 0.97893 0.93941 1.01459 1.21916 0.99038 0.98881 0.96333 1.22437 0.94035 0.86106 1.01226 1.47997 1.02191 1.11465 1.62982 1.21858 0.86331 0.89979 0.81047 1.93542 1.59773 1.29695 1.75621 1.42109 1.07925 1.06712 1.68508 1.17678 0.80821 0.98933 0.99909 1.21526 0.92341 0.97409 0.98620 1.20921 0.94946 0.97956 0.99882 1.21084 0.85292 0.98359 1.01667 1.98359 1.13002 1.97236 1.95504 1.21047 0.91409 0.99597 1.00391 1.21125 0.96098 0.98397 0.96520 1.22852 0.99038 0.81297 0.98694 0.93160 0.92584 0.92087 0.92610 0.86752 0.87257 0.87965 0.73261 0.85398 0.84691 0.81771 0.81528 0.93388 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.69 11.41 21.45 0.24 -52.45 16 2 C 0.02 0.93 5.30 84.65 0.45 1.38 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -28.41 8.56 25.60 0.22 -28.19 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.04 2.09 2.26 -11.31 -0.03 2.07 16 10 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 11 C -0.11 -3.78 5.10 30.62 0.16 -3.62 16 12 C -0.12 -2.91 6.08 30.67 0.19 -2.72 16 13 C 0.09 1.87 6.43 86.36 0.56 2.43 16 14 N -0.54 -18.86 2.97 -706.07 -2.09 -20.96 16 15 C 0.57 20.52 7.58 179.06 1.36 21.87 16 16 S -0.72 -34.33 23.99 -56.49 -1.36 -35.69 16 17 N -0.62 -15.64 5.21 -189.96 -0.99 -16.63 16 18 C 0.12 3.08 5.97 38.15 0.23 3.31 16 19 C -0.08 -2.32 7.88 22.39 0.18 -2.14 16 20 C -0.12 -3.09 9.82 22.27 0.22 -2.87 16 21 C -0.04 -0.81 6.32 22.34 0.14 -0.67 16 22 Cl -0.07 -1.40 28.95 -2.72 -0.08 -1.48 16 23 C -0.10 -1.86 9.82 22.27 0.22 -1.64 16 24 C -0.10 -1.81 9.97 22.39 0.22 -1.59 16 25 C 0.10 4.71 5.29 86.51 0.46 5.17 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.11 1.44 5.59 -2.39 -0.01 1.43 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.42 6.89 6.33 -92.71 -0.59 6.30 16 34 H 0.13 4.89 5.95 -10.35 -0.06 4.83 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.13 6.93 4.16 -3.13 -0.01 6.92 16 Total: -1.00 -72.59 339.02 2.76 -69.83 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.45 Total: 18.98 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.56 Total: -7.21 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.84 Total: -90.04 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -34.33 SS G_CDS: -1.36 Total: -35.69 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -72.59 2.76 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849271277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.098 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds