Wall clock time and date at job start Tue Mar 31 2020 14:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48510 * 109.46858 * 269.99439 * 3 2 1 5 5 H 1.48495 * 109.47408 * 29.99076 * 3 2 1 6 6 H 1.48503 * 109.47630 * 149.99864 * 3 2 1 7 7 C 1.37878 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00020 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00126 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.49590 * 60.00748 * 9 7 2 11 11 C 1.53041 * 109.49984 * 180.02562 * 9 7 2 12 12 C 1.53036 * 109.54043 * 181.35529 * 11 9 7 13 13 C 1.53196 * 109.30981 * 298.63346 * 12 11 9 14 14 N 1.46930 * 108.77518 * 54.63663 * 13 12 11 15 15 C 1.34771 * 120.63059 * 126.41179 * 14 13 12 16 16 S 1.71199 * 120.00075 * 175.02777 * 15 14 13 17 17 N 1.34779 * 120.00068 * 355.02608 * 15 14 13 18 18 C 1.39948 * 120.00032 * 79.24980 * 17 15 14 19 19 C 1.38858 * 120.07711 * 4.78726 * 18 17 15 20 20 C 1.38118 * 119.93966 * 179.75001 * 19 18 17 21 21 C 1.38290 * 120.09187 * 0.52411 * 20 19 18 22 22 C 1.38261 * 120.15535 * 359.75078 * 21 20 19 23 23 C 1.38227 * 120.05609 * 359.97375 * 22 21 20 24 24 Cl 1.73598 * 120.04617 * 179.97438 * 23 22 21 25 25 C 1.46995 * 118.75238 * 306.39331 * 14 13 12 26 26 H 0.97002 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46025 * 301.37676 * 11 9 7 28 28 H 1.09004 * 109.46016 * 61.34372 * 11 9 7 29 29 H 1.08994 * 109.50270 * 58.58813 * 12 11 9 30 30 H 1.09001 * 109.49488 * 178.68819 * 12 11 9 31 31 H 1.09000 * 109.58694 * 174.42496 * 13 12 11 32 32 H 1.09002 * 109.58907 * 294.85070 * 13 12 11 33 33 H 0.97002 * 120.00221 * 259.25091 * 17 15 14 34 34 H 1.07995 * 120.02600 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.95044 * 180.29797 * 20 19 18 36 36 H 1.08001 * 119.92119 * 179.76648 * 21 20 19 37 37 H 1.07996 * 119.97372 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.57865 * 293.82254 * 25 14 13 39 39 H 1.09003 * 109.62598 * 173.38182 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8756 -0.6798 0.8894 11 6 4.0224 -2.6366 0.0001 12 6 5.5524 -2.6378 0.0336 13 6 6.0871 -1.9357 -1.2186 14 7 5.4864 -0.5975 -1.3033 15 6 6.2628 0.4973 -1.4256 16 16 5.5450 2.0351 -1.6508 17 7 7.6045 0.3814 -1.3706 18 6 8.3155 -0.0586 -2.4929 19 6 7.6533 -0.2810 -3.6930 20 6 8.3586 -0.7102 -4.8002 21 6 9.7212 -0.9291 -4.7123 22 6 10.3835 -0.7143 -3.5178 23 6 9.6848 -0.2793 -2.4072 24 17 10.5165 -0.0104 -0.9074 25 6 4.0224 -0.4751 -1.2525 26 1 -0.4850 0.8401 -0.0004 27 1 3.6395 -3.1574 0.8778 28 1 3.6787 -3.1437 -0.9016 29 1 5.8973 -2.1094 0.9223 30 1 5.9149 -3.6655 0.0572 31 1 7.1713 -1.8460 -1.1524 32 1 5.8195 -2.5130 -2.1037 33 1 8.0774 0.6029 -0.5531 34 1 6.5885 -0.1142 -3.7616 35 1 7.8445 -0.8786 -5.7349 36 1 10.2694 -1.2683 -5.5788 37 1 11.4476 -0.8866 -3.4523 38 1 3.5865 -0.9332 -2.1403 39 1 3.7444 0.5780 -1.2084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849271497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:54 Heat of formation + Delta-G solvation = 52.474171 kcal Electronic energy + Delta-G solvation = -23314.826199 eV Core-core repulsion = 19988.784335 eV Total energy + Delta-G solvation = -3326.041864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70922 -39.09210 -36.76418 -36.59604 -33.64648 -32.70067 -31.06546 -30.86500 -29.88671 -26.18160 -25.37810 -23.45057 -23.04842 -22.50300 -20.92709 -19.47202 -18.42127 -17.87878 -17.45954 -16.86415 -16.56854 -15.19364 -14.85348 -14.69541 -14.52430 -14.30146 -14.16176 -13.99961 -13.87239 -13.32274 -12.94244 -12.49246 -12.33973 -12.11582 -11.74534 -11.67385 -11.57602 -11.29096 -11.25261 -11.06147 -10.80663 -10.44760 -10.24328 -10.13557 -9.77890 -9.50237 -9.28731 -9.15786 -8.64176 -8.14433 -7.62740 -7.15394 -6.17835 -4.25690 0.76832 0.88385 1.06203 1.81242 2.02240 2.95830 3.13107 3.40847 3.44966 3.52978 3.65594 4.38455 4.39181 4.63706 4.74616 4.89154 4.91261 4.98091 5.08313 5.10677 5.16847 5.38821 5.49247 5.63086 5.69803 5.79143 5.79913 5.90379 6.05021 6.13296 6.18394 6.26681 6.37218 6.39710 6.48005 6.72016 6.89885 6.99072 7.06685 7.20528 7.54683 8.33654 8.80221 9.39249 10.90240 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.004326 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.397312 B = 6471.311259 C = 6782.703034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.869 3.131 4 H -0.252 1.252 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.012 3.988 10 H 0.034 0.966 11 C -0.106 4.106 12 C -0.133 4.133 13 C 0.083 3.917 14 N -0.502 5.502 15 C 0.551 3.449 16 S -0.593 6.593 17 N -0.692 5.692 18 C 0.214 3.786 19 C -0.164 4.164 20 C -0.066 4.066 21 C -0.151 4.151 22 C -0.068 4.068 23 C -0.093 4.093 24 Cl -0.068 7.068 25 C 0.070 3.930 26 H 0.268 0.732 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.424 0.576 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.537 -6.410 -6.725 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.178 1.178 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.098 0.902 9 C -0.008 4.008 10 H 0.052 0.948 11 C -0.144 4.144 12 C -0.172 4.172 13 C -0.042 4.042 14 N -0.200 5.200 15 C 0.200 3.800 16 S -0.459 6.459 17 N -0.329 5.329 18 C 0.111 3.889 19 C -0.186 4.186 20 C -0.085 4.085 21 C -0.171 4.171 22 C -0.088 4.088 23 C -0.125 4.125 24 Cl -0.039 7.039 25 C -0.051 4.051 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.268 0.732 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.666 -5.472 -6.716 22.408 hybrid contribution 1.033 0.323 0.596 1.236 sum 21.699 -5.148 -6.119 23.126 Atomic orbital electron populations 1.69880 1.06431 1.27551 1.48614 1.25091 0.94852 0.99419 0.93441 0.87148 0.79519 0.82927 0.80673 1.17783 1.22322 1.18461 1.20826 0.87446 0.94868 1.52940 0.90229 1.19507 0.97510 0.91807 0.92009 0.94768 1.21544 0.91480 0.99033 1.02297 1.21993 0.98882 1.00015 0.96292 1.22267 0.98659 0.82593 1.00729 1.49331 1.10542 1.05439 1.54671 1.22278 0.83531 0.91743 0.82490 1.93350 1.77328 1.11639 1.63556 1.41922 1.03301 1.72626 1.15048 1.17487 0.89333 0.94629 0.87456 1.20825 1.00907 1.05618 0.91289 1.21047 0.94108 0.95530 0.97833 1.20983 0.94537 1.04074 0.97549 1.20854 1.00066 0.96997 0.90848 1.20354 0.90581 1.11954 0.89561 1.98362 1.77787 1.95394 1.32373 1.23865 0.71765 1.06632 1.02832 0.92247 0.91406 0.92078 0.91645 0.90640 0.89751 0.89501 0.73193 0.85079 0.84980 0.85034 0.84647 0.89427 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 2 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 3 Si 0.87 22.49 23.51 -169.99 -4.00 18.49 16 4 H -0.25 -6.61 6.92 56.52 0.39 -6.22 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.26 -6.68 6.53 56.52 0.37 -6.31 16 7 C -0.52 -13.75 9.14 -34.44 -0.31 -14.07 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.01 0.25 1.83 -91.66 -0.17 0.08 16 10 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 11 C -0.11 -1.78 5.11 -26.69 -0.14 -1.92 16 12 C -0.13 -1.74 6.08 -26.61 -0.16 -1.91 16 13 C 0.08 1.06 6.06 -3.71 -0.02 1.04 16 14 N -0.50 -8.37 2.97 -174.73 -0.52 -8.89 16 15 C 0.55 9.50 5.40 -86.92 -0.47 9.03 16 16 S -0.59 -13.03 27.88 -107.50 -3.00 -16.02 16 17 N -0.69 -9.63 4.23 -11.37 -0.05 -9.67 16 18 C 0.21 2.62 5.36 -83.65 -0.45 2.17 16 19 C -0.16 -1.96 9.14 -39.40 -0.36 -2.32 16 20 C -0.07 -0.61 10.04 -39.61 -0.40 -1.01 16 21 C -0.15 -1.20 10.04 -39.55 -0.40 -1.60 16 22 C -0.07 -0.58 9.82 -39.58 -0.39 -0.97 16 23 C -0.09 -0.98 6.34 -39.32 -0.25 -1.23 16 24 Cl -0.07 -0.67 27.60 -51.86 -1.43 -2.10 16 25 C 0.07 1.42 4.99 -3.68 -0.02 1.40 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.96 6.07 -51.93 -0.32 0.65 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.42 5.51 7.50 -40.82 -0.31 5.20 16 34 H 0.13 1.82 7.02 -52.49 -0.37 1.45 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 39 H 0.12 2.76 1.47 -50.55 -0.07 2.69 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -31.66 334.09 -11.65 -43.31 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.84 Total: 4.82 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.63 Total: -9.25 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.21 Total: -44.28 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.00 Total: 18.49 kcal Atomic # 16 Polarization: -13.03 SS G_CDS: -3.00 Total: -16.02 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.43 Total: -2.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.66 -11.65 -43.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849271497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.788 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds