Wall clock time and date at job start Tue Mar 31 2020 14:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00317 * 2 1 4 4 H 1.48495 * 109.47338 * 274.83714 * 3 2 1 5 5 H 1.48506 * 109.46839 * 34.83951 * 3 2 1 6 6 H 1.48503 * 109.47318 * 154.83357 * 3 2 1 7 7 C 1.37879 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99626 * 5.19414 * 7 2 1 9 9 C 1.50701 * 120.00205 * 185.18176 * 7 2 1 10 10 H 1.08997 * 109.52762 * 325.32404 * 9 7 2 11 11 C 1.53040 * 109.49809 * 205.24154 * 9 7 2 12 12 C 1.53037 * 109.54058 * 178.68706 * 11 9 7 13 13 C 1.52757 * 109.38419 * 61.23934 * 12 11 9 14 14 N 1.46924 * 109.00931 * 305.59080 * 13 12 11 15 15 C 1.34774 * 120.63605 * 233.58130 * 14 13 12 16 16 S 1.71199 * 120.00402 * 184.92489 * 15 14 13 17 17 N 1.34776 * 119.99528 * 4.92615 * 15 14 13 18 18 C 1.39950 * 120.00139 * 184.75152 * 17 15 14 19 19 C 1.38859 * 120.07618 * 313.24460 * 18 17 15 20 20 C 1.38107 * 119.94365 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.09395 * 359.97438 * 20 19 18 22 22 C 1.38270 * 120.15168 * 0.02562 * 21 20 19 23 23 C 1.38219 * 120.05560 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.04737 * 179.97438 * 23 22 21 25 25 C 1.46927 * 118.73794 * 53.30983 * 14 13 12 26 26 H 0.97002 * 119.99772 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46449 * 298.71064 * 11 9 7 28 28 H 1.09007 * 109.45867 * 58.66787 * 11 9 7 29 29 H 1.08999 * 109.50291 * 181.32240 * 12 11 9 30 30 H 1.09009 * 109.49781 * 301.38156 * 12 11 9 31 31 H 1.09000 * 109.51283 * 185.71040 * 13 12 11 32 32 H 1.09003 * 109.43153 * 65.42389 * 13 12 11 33 33 H 0.97005 * 120.00475 * 4.74718 * 17 15 14 34 34 H 1.07998 * 120.02385 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.95340 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.92845 * 180.27241 * 21 20 19 37 37 H 1.07994 * 119.97073 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.59017 * 66.42862 * 25 14 13 39 39 H 1.09002 * 109.58747 * 186.71471 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3945 2.1054 -1.3950 5 1 1.5015 2.6210 0.7999 6 1 3.5941 1.4128 0.5954 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1275 -0.0837 9 6 3.5069 -1.1967 0.1184 10 1 3.9143 -0.3272 -0.3974 11 6 4.0665 -2.4737 -0.5127 12 6 5.5942 -2.4621 -0.4227 13 6 6.0154 -2.4231 1.0451 14 7 5.3633 -1.2808 1.6999 15 6 6.0906 -0.3705 2.3772 16 16 5.3053 0.8829 3.2393 17 7 7.4362 -0.4470 2.3758 18 6 8.1881 0.4367 3.1584 19 6 7.8997 1.7949 3.1464 20 6 8.6438 2.6645 3.9193 21 6 9.6753 2.1844 4.7055 22 6 9.9659 0.8326 4.7204 23 6 9.2251 -0.0432 3.9493 24 17 9.5906 -1.7402 3.9677 25 6 3.9038 -1.1465 1.5972 26 1 -0.4850 0.8401 -0.0004 27 1 3.6780 -3.3422 0.0193 28 1 3.7647 -2.5241 -1.5589 29 1 5.9933 -3.3606 -0.8933 30 1 5.9821 -1.5809 -0.9340 31 1 7.0978 -2.3125 1.1105 32 1 5.7102 -3.3479 1.5347 33 1 7.8836 -1.1145 1.8324 34 1 7.0947 2.1710 2.5325 35 1 8.4199 3.7210 3.9098 36 1 10.2527 2.8662 5.3123 37 1 10.7717 0.4608 5.3358 38 1 3.4229 -1.9651 2.1326 39 1 3.5931 -0.1951 2.0289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849271498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:57 Heat of formation + Delta-G solvation = 44.064036 kcal Electronic energy + Delta-G solvation = -22968.070565 eV Core-core repulsion = 19641.664011 eV Total energy + Delta-G solvation = -3326.406555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45601 -39.15557 -36.73946 -36.53663 -33.67626 -32.59424 -30.94539 -30.86125 -29.58525 -26.18305 -25.32709 -23.37779 -22.63362 -22.52917 -21.04139 -19.53311 -18.58302 -17.93385 -16.92720 -16.63463 -15.81905 -15.68660 -14.84071 -14.54086 -14.32927 -14.23727 -13.96184 -13.82291 -13.71835 -13.34718 -12.78072 -12.52730 -12.41437 -12.15245 -11.67903 -11.60940 -11.58883 -11.19896 -11.17433 -10.86406 -10.77658 -10.67707 -10.31129 -9.76583 -9.59104 -9.46942 -9.29121 -8.98253 -8.60936 -8.33226 -7.42661 -6.80510 -6.16726 -4.20597 0.82331 1.15829 1.69366 1.84744 2.11367 2.76247 3.22449 3.33116 3.47006 3.54187 3.57680 4.42308 4.59501 4.65034 4.83813 4.94019 5.01493 5.10547 5.17988 5.19399 5.30438 5.50245 5.63085 5.67757 5.88198 5.90417 6.01308 6.06226 6.13327 6.20533 6.35192 6.39501 6.47164 6.50600 6.67459 6.77577 6.96111 7.08879 7.22126 7.36890 7.62692 8.38805 8.86105 9.45069 10.94318 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.004395 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.799829 B = 6369.320308 C = 7560.898505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.862 3.138 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.010 3.990 10 H 0.037 0.963 11 C -0.107 4.107 12 C -0.136 4.136 13 C 0.094 3.906 14 N -0.544 5.544 15 C 0.556 3.444 16 S -0.637 6.637 17 N -0.646 5.646 18 C 0.146 3.854 19 C -0.055 4.055 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.113 4.113 23 C -0.044 4.044 24 Cl -0.073 7.073 25 C 0.095 3.905 26 H 0.267 0.733 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.404 0.596 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.463 -1.702 4.739 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.688 3.312 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.557 4.557 8 H 0.094 0.906 9 C -0.010 4.010 10 H 0.055 0.945 11 C -0.145 4.145 12 C -0.174 4.174 13 C -0.032 4.032 14 N -0.248 5.248 15 C 0.199 3.801 16 S -0.503 6.503 17 N -0.277 5.277 18 C 0.051 3.949 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.074 4.074 24 Cl -0.044 7.044 25 C -0.025 4.025 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.245 0.755 34 H 0.174 0.826 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.094 0.906 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.633 -1.069 5.238 22.284 hybrid contribution 0.948 -0.388 -0.621 1.198 sum 22.581 -1.457 4.617 23.094 Atomic orbital electron populations 1.69896 1.06515 1.27433 1.48663 1.25052 0.94692 0.99254 0.93352 0.87038 0.82492 0.83607 0.78036 1.20882 1.21082 1.16329 1.20793 0.88197 0.94810 1.51928 0.90574 1.19495 0.97481 0.94244 0.89752 0.94521 1.21604 0.91082 0.99943 1.01839 1.21944 0.99745 1.02185 0.93572 1.21941 0.96215 0.89541 0.95459 1.48145 1.10661 1.20690 1.45312 1.22393 0.83592 0.89365 0.84799 1.93276 1.72120 1.31173 1.53712 1.42270 1.03349 1.36063 1.46020 1.17104 0.92960 0.89477 0.95359 1.21628 0.97001 0.90266 0.98956 1.21122 0.94899 1.00227 0.96863 1.21137 0.97757 0.94540 0.99101 1.20771 1.00313 0.92841 0.99397 1.20867 1.00536 0.85118 1.00865 1.98358 1.94108 1.14232 1.97732 1.23552 0.71231 1.05721 1.01975 0.92361 0.92371 0.91559 0.90840 0.91776 0.91465 0.89637 0.75457 0.82560 0.84963 0.85121 0.84835 0.90649 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.86 21.51 26.45 -169.99 -4.50 17.01 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.24 -5.87 5.81 56.52 0.33 -5.55 16 7 C -0.52 -13.64 8.87 -34.44 -0.31 -13.94 16 8 H 0.08 2.16 8.05 -52.48 -0.42 1.74 16 9 C 0.01 0.22 1.78 -91.65 -0.16 0.06 16 10 H 0.04 0.83 5.70 -51.93 -0.30 0.53 16 11 C -0.11 -1.82 5.15 -26.69 -0.14 -1.96 16 12 C -0.14 -1.75 6.06 -26.84 -0.16 -1.91 16 13 C 0.09 1.16 6.40 -3.94 -0.03 1.14 16 14 N -0.54 -9.07 2.98 -175.05 -0.52 -9.59 16 15 C 0.56 9.56 7.58 -86.92 -0.66 8.90 16 16 S -0.64 -13.40 24.18 -107.50 -2.60 -16.00 16 17 N -0.65 -8.81 4.74 -11.37 -0.05 -8.86 16 18 C 0.15 1.95 5.90 -83.65 -0.49 1.46 16 19 C -0.06 -0.76 7.88 -39.40 -0.31 -1.07 16 20 C -0.11 -1.20 10.04 -39.61 -0.40 -1.60 16 21 C -0.11 -0.98 10.04 -39.55 -0.40 -1.38 16 22 C -0.11 -1.11 9.82 -39.58 -0.39 -1.50 16 23 C -0.04 -0.51 6.34 -39.32 -0.25 -0.76 16 24 Cl -0.07 -0.77 28.21 -51.86 -1.46 -2.23 16 25 C 0.10 1.94 5.29 -3.71 -0.02 1.92 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.07 0.65 5.57 -51.93 -0.29 0.36 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 4.49 5.98 -40.82 -0.24 4.25 16 34 H 0.16 2.47 6.22 -47.61 -0.30 2.18 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.12 2.80 4.56 -50.51 -0.23 2.57 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -31.75 334.58 -11.92 -43.66 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.79 Total: 5.20 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.81 Total: -8.48 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.20 Total: -44.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.50 Total: 17.01 kcal Atomic # 16 Polarization: -13.40 SS G_CDS: -2.60 Total: -16.00 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.46 Total: -2.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.75 -11.92 -43.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849271498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.728 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds