Wall clock time and date at job start Tue Mar 31 2020 14:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47072 * 269.99869 * 3 2 1 5 5 H 1.48496 * 109.47073 * 29.99823 * 3 2 1 6 6 H 1.48498 * 109.47190 * 149.99991 * 3 2 1 7 7 C 1.37878 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00071 * 359.72490 * 7 2 1 10 10 H 1.08999 * 109.49580 * 60.34181 * 9 7 2 11 11 C 1.53039 * 109.49808 * 180.43927 * 9 7 2 12 12 C 1.53032 * 109.53781 * 181.31644 * 11 9 7 13 13 C 1.53194 * 109.31458 * 298.63465 * 12 11 9 14 14 N 1.46924 * 108.77283 * 54.63274 * 13 12 11 15 15 C 1.34782 * 120.62522 * 126.41711 * 14 13 12 16 16 S 1.71202 * 119.99648 * 175.01228 * 15 14 13 17 17 N 1.34778 * 120.00250 * 355.01135 * 15 14 13 18 18 C 1.39881 * 119.99694 * 79.25236 * 17 15 14 19 19 C 1.38918 * 120.06098 * 185.05490 * 18 17 15 20 20 C 1.38096 * 119.95253 * 179.97438 * 19 18 17 21 21 C 1.38286 * 120.08662 * 359.97438 * 20 19 18 22 22 C 1.38384 * 120.13040 * 0.02642 * 21 20 19 23 23 Cl 1.73597 * 119.97809 * 179.97438 * 22 21 20 24 24 C 1.38250 * 120.04253 * 359.73879 * 22 21 20 25 25 C 1.46920 * 118.74026 * 306.39240 * 14 13 12 26 26 H 0.97000 * 120.00067 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.45835 * 301.33521 * 11 9 7 28 28 H 1.08999 * 109.46300 * 61.29249 * 11 9 7 29 29 H 1.08998 * 109.49927 * 178.68026 * 12 11 9 30 30 H 1.09002 * 109.50086 * 58.58773 * 12 11 9 31 31 H 1.09002 * 109.58408 * 294.84837 * 13 12 11 32 32 H 1.09003 * 109.59030 * 174.42465 * 13 12 11 33 33 H 0.96994 * 119.99983 * 259.25251 * 17 15 14 34 34 H 1.07999 * 120.02131 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.95745 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.93828 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.04361 * 180.27181 * 24 22 21 38 38 H 1.08995 * 109.58880 * 293.82010 * 25 14 13 39 39 H 1.08999 * 109.70230 * 173.46697 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0074 10 1 0.6251 -2.5626 -0.8827 11 6 2.2449 -3.6628 0.0176 12 6 1.4811 -4.9886 -0.0085 13 6 0.6026 -5.0921 1.2423 14 7 -0.2561 -3.9022 1.3167 15 6 -1.5927 -4.0266 1.4368 16 16 -2.5661 -2.6345 1.6505 17 7 -2.1631 -5.2468 1.3885 18 6 -2.1402 -6.0745 2.5159 19 6 -2.6335 -7.3708 2.4376 20 6 -2.6093 -8.1862 3.5518 21 6 -2.0941 -7.7143 4.7452 22 6 -1.6018 -6.4236 4.8272 23 17 -0.9567 -5.8349 6.3275 24 6 -1.6190 -5.6042 3.7138 25 6 0.3700 -2.5744 1.2584 26 1 -0.4850 0.8400 0.0004 27 1 2.8893 -3.5977 -0.8591 28 1 2.8539 -3.6124 0.9202 29 1 2.1898 -5.8166 -0.0249 30 1 0.8530 -5.0292 -0.8985 31 1 1.2343 -5.1429 2.1291 32 1 -0.0170 -5.9867 1.1807 33 1 -2.5894 -5.5509 0.5721 34 1 -3.0349 -7.7408 1.5057 35 1 -2.9924 -9.1941 3.4909 36 1 -2.0760 -8.3542 5.6150 37 1 -1.2308 -4.5984 3.7766 38 1 0.9826 -2.4199 2.1466 39 1 -0.4016 -1.8062 1.2086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849272285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:37 Heat of formation + Delta-G solvation = 45.341081 kcal Electronic energy + Delta-G solvation = -23042.736556 eV Core-core repulsion = 19716.385379 eV Total energy + Delta-G solvation = -3326.351178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46339 -38.81897 -36.86851 -36.05070 -33.50678 -32.57570 -30.94869 -30.12990 -29.74780 -25.83590 -25.30492 -23.14064 -22.84382 -22.37330 -20.94039 -19.29311 -18.23035 -17.62806 -17.05352 -16.30394 -16.20030 -15.05567 -14.89950 -14.65772 -14.28813 -14.13049 -13.88715 -13.78934 -13.64926 -12.93614 -12.83850 -12.29635 -12.12666 -12.04826 -11.66009 -11.25028 -11.15295 -11.10661 -11.04634 -10.85385 -10.62221 -10.56198 -10.35263 -10.10248 -9.68693 -9.36049 -9.16737 -9.00478 -8.49249 -7.99831 -7.26377 -6.71164 -6.07077 -4.18855 0.98111 1.08983 1.24205 1.98183 2.36579 3.24832 3.28791 3.35836 3.37410 3.38195 3.66335 4.36705 4.59077 4.84649 4.92626 4.95149 5.08583 5.12983 5.21742 5.26420 5.32877 5.44818 5.65380 5.81551 5.88002 6.00902 6.05958 6.14338 6.18136 6.32999 6.39285 6.53070 6.67246 6.69186 6.91505 7.01089 7.22466 7.35091 7.58913 7.70759 7.93753 8.22549 8.83291 9.47818 10.96673 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003799 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.747820 B = 7367.681987 C = 7515.752633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.048 3.952 10 H 0.032 0.968 11 C -0.117 4.117 12 C -0.130 4.130 13 C 0.083 3.917 14 N -0.501 5.501 15 C 0.539 3.461 16 S -0.573 6.573 17 N -0.693 5.693 18 C 0.218 3.782 19 C -0.173 4.173 20 C -0.066 4.066 21 C -0.158 4.158 22 C 0.012 3.988 23 Cl -0.068 7.068 24 C -0.168 4.168 25 C 0.075 3.925 26 H 0.268 0.732 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.423 0.577 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -18.617 5.741 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.028 3.972 10 H 0.050 0.950 11 C -0.154 4.154 12 C -0.169 4.169 13 C -0.043 4.043 14 N -0.199 5.199 15 C 0.189 3.811 16 S -0.439 6.439 17 N -0.329 5.329 18 C 0.116 3.884 19 C -0.195 4.195 20 C -0.085 4.085 21 C -0.179 4.179 22 C -0.015 4.015 23 Cl -0.039 7.039 24 C -0.192 4.192 25 C -0.044 4.044 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.263 -17.343 6.003 18.492 hybrid contribution 0.876 0.063 -0.313 0.932 sum -1.387 -17.281 5.690 18.246 Atomic orbital electron populations 1.69846 1.05473 1.27374 1.47353 1.25069 0.94965 0.99324 0.94493 0.86584 0.79817 0.83446 0.78151 1.20635 1.20983 1.19917 1.20934 0.92896 0.89573 1.53430 0.92124 1.18963 0.92238 0.92954 0.93032 0.95016 1.21728 0.98809 0.93582 1.01307 1.21942 0.98555 0.99939 0.96425 1.22172 0.93967 0.87939 1.00243 1.49340 1.04345 1.11613 1.54592 1.22350 0.85679 0.89682 0.83391 1.93310 1.59923 1.28151 1.62488 1.41872 1.61727 1.14837 1.14418 1.17599 0.94967 0.89626 0.86245 1.20706 1.06340 0.92161 1.00334 1.20821 0.96896 0.99376 0.91361 1.20875 1.03378 0.94369 0.99265 1.20585 0.99419 0.94267 0.87268 1.98381 1.84832 1.88689 1.31952 1.20637 1.06506 1.01096 0.90914 1.23594 1.00751 0.79977 1.00122 0.92180 0.92247 0.92785 0.91331 0.91840 0.90196 0.90171 0.73563 0.85099 0.84810 0.85086 0.84838 0.91975 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 11.38 55.43 0.63 -23.42 16 2 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -13.55 8.57 -34.44 -0.30 -13.84 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.08 2.25 -91.65 -0.21 0.88 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.12 -2.10 5.11 -26.69 -0.14 -2.24 16 12 C -0.13 -1.86 6.08 -26.61 -0.16 -2.03 16 13 C 0.08 1.18 6.06 -3.71 -0.02 1.16 16 14 N -0.50 -9.00 2.97 -174.79 -0.52 -9.52 16 15 C 0.54 9.77 5.40 -86.91 -0.47 9.30 16 16 S -0.57 -13.21 28.68 -107.50 -3.08 -16.29 16 17 N -0.69 -9.55 4.28 -11.40 -0.05 -9.60 16 18 C 0.22 2.73 5.36 -83.71 -0.45 2.28 16 19 C -0.17 -1.64 9.90 -39.38 -0.39 -2.03 16 20 C -0.07 -0.56 10.04 -39.62 -0.40 -0.95 16 21 C -0.16 -1.55 9.83 -39.51 -0.39 -1.93 16 22 C 0.01 0.15 6.32 -39.52 -0.25 -0.10 16 23 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.32 16 24 C -0.17 -2.35 8.92 -39.35 -0.35 -2.70 16 25 C 0.08 1.68 5.26 -3.71 -0.02 1.66 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.98 6.07 -51.93 -0.32 0.67 16 33 H 0.42 4.86 8.82 -40.82 -0.36 4.50 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 2.22 7.02 -52.49 -0.37 1.85 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.17 4.25 4.11 -50.62 -0.21 4.04 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -29.71 344.73 -13.00 -42.71 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.02 Total: 6.55 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.63 Total: -8.88 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.06 Total: -42.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -13.21 SS G_CDS: -3.08 Total: -16.29 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.71 -13.00 -42.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.047 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds